-
1
-
-
11144353587
-
Complete genome sequence of the apicomplexan, Cryptosporidium parvum
-
Abrahamsen, M.S., Templeton, T.J., Enomoto, S., Abrahante, J.E., Zhu, G., Lancto, C.A., Deng, M., Liu, C., Widmer, G., Tzipori, S., et al. 2004. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science 304: 441-445.
-
(2004)
Science
, vol.304
, pp. 441-445
-
-
Abrahamsen, M.S.1
Templeton, T.J.2
Enomoto, S.3
Abrahante, J.E.4
Zhu, G.5
Lancto, C.A.6
Deng, M.7
Liu, C.8
Widmer, G.9
Tzipori, S.10
-
2
-
-
3142749596
-
Prevalence of intron gain over intron loss in the evolution of paralogous gene families
-
Babenko, V.N., Rogozin, I.B., Mekhedov, S.L., and Koonin, E.V. 2004. Prevalence of intron gain over intron loss in the evolution of paralogous gene families. Nucleic Acids Res. 32: 3724-3733.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3724-3733
-
-
Babenko, V.N.1
Rogozin, I.B.2
Mekhedov, S.L.3
Koonin, E.V.4
-
3
-
-
0036900274
-
Patterns of insertion and deletion in constrasting chromatin domains
-
Blumenstiel, J.P., Hartl, D.L., and Lozovsky, E.R. 2002. Patterns of insertion and deletion in constrasting chromatin domains. Mol. Biol. Evol. 19: 2211-2225.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2211-2225
-
-
Blumenstiel, J.P.1
Hartl, D.L.2
Lozovsky, E.R.3
-
4
-
-
0002849514
-
Historical review
-
(ed. M.F. Boyd), Saunders, Philadelphia
-
Boyd, M.F. 1949. Historical review. In Malariology (ed. M.F. Boyd), pp. 3-25. Saunders, Philadelphia.
-
(1949)
Malariology
, pp. 3-25
-
-
Boyd, M.F.1
-
5
-
-
3042599701
-
Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites
-
Castillo-Davis, C.I., Bedford, T.B., and Hartl, D.L. 2004. Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites. Mol. Biol. Evol. 21: 1422-1427.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1422-1427
-
-
Castillo-Davis, C.I.1
Bedford, T.B.2
Hartl, D.L.3
-
6
-
-
0018758145
-
Split genes and RNA splicing
-
Crick, F. 1979. Split genes and RNA splicing. Science 204: 264-271.
-
(1979)
Science
, vol.204
, pp. 264-271
-
-
Crick, F.1
-
7
-
-
33646137380
-
Likely scenarios of intron evolution
-
Third RECOMB Satellite Workshop on Comparative Genomics
-
Csuros, M. 2005. Likely scenarios of intron evolution. Third RECOMB Satellite Workshop on Comparative Genomics. Lecture Notes Comp. Sci. 3678: 47-60.
-
(2005)
Lecture Notes Comp. Sci.
, vol.3678
, pp. 47-60
-
-
Csuros, M.1
-
8
-
-
18044405184
-
Multiple events of horizontal transfer of the Minos transposable element between Drosophila species
-
de Almeida, L.M. and Carareto, C.M. 2005. Multiple events of horizontal transfer of the Minos transposable element between Drosophila species. Mol. Phylogenet. Evol. 110: 583-594.
-
(2005)
Mol. Phylogenet. Evol.
, vol.110
, pp. 583-594
-
-
De Almeida, L.M.1
Carareto, C.M.2
-
9
-
-
31144442173
-
Horizontal transfer of a plant transposon
-
Diao, X., Freeling, M., and Lisch, D. 2006. Horizontal transfer of a plant transposon. PLoS Biol. 4: e5.
-
(2006)
PLoS Biol.
, vol.4
-
-
Diao, X.1
Freeling, M.2
Lisch, D.3
-
10
-
-
0024462103
-
Evidence that introns arose at proto-splice sites
-
Dibb, N.J. and Newman, A.J. 1989. Evidence that introns arose at proto-splice sites. EMBO J. 8: 2015-2021.
-
(1989)
EMBO J.
, vol.8
, pp. 2015-2021
-
-
Dibb, N.J.1
Newman, A.J.2
-
11
-
-
4644260480
-
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica
-
Edvardsen, R.B., Lerat, E., Maeland, A.D., Flat, M., Tewari, R., Jensen, M.F., Lehrach, H., Reinhardt, R., Seo, H.C., and Chourrout, D. 2004. Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica. J. Mol. Evol. 59: 448-457.
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 448-457
-
-
Edvardsen, R.B.1
Lerat, E.2
Maeland, A.D.3
Flat, M.4
Tewari, R.5
Jensen, M.F.6
Lehrach, H.7
Reinhardt, R.8
Seo, H.C.9
Chourrout, D.10
-
12
-
-
0028998727
-
Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes
-
Escalante, A.A. and Ayala, F.J. 1995. Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. Proc. Natl. Acad. Sci. 92: 5793-5797.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 5793-5797
-
-
Escalante, A.A.1
Ayala, F.J.2
-
13
-
-
0037058978
-
Large-scale comparison of intron positions among animal, plant, and fungal genes
-
Fedorov, A., Merican, A.F., and Gilbert, W. 2002. Large-scale comparison of intron positions among animal, plant, and fungal genes. Proc. Natl. Acad. Sci. 99: 16128-16133.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 16128-16133
-
-
Fedorov, A.1
Merican, A.F.2
Gilbert, W.3
-
14
-
-
0142092553
-
Mystery of intron gain
-
Fedorov, A., Roy, S., Fedorova, L., and Gilbert, W. 2003. Mystery of intron gain. Genome Res. 13: 2236-2241.
-
(2003)
Genome Res.
, vol.13
, pp. 2236-2241
-
-
Fedorov, A.1
Roy, S.2
Fedorova, L.3
Gilbert, W.4
-
15
-
-
0032432089
-
Allelic diversity in the merozoite surface protein-1 and epidemiology of multiple-clone Plasmodium falciparum infections in northern Tanzania
-
Ferreira, M.U., Lin, Q., Kimura, M., Ndawi, B.T., Tanabe, K., and Kawamoto, F. 1998. Allelic diversity in the merozoite surface protein-1 and epidemiology of multiple-clone Plasmodium falciparum infections in northern Tanzania. J. Parasitol. 84: 1286-1289.
-
(1998)
J. Parasitol.
, vol.84
, pp. 1286-1289
-
-
Ferreira, M.U.1
Lin, Q.2
Kimura, M.3
Ndawi, B.T.4
Tanabe, K.5
Kawamoto, F.6
-
16
-
-
0020447816
-
Selfish DNA: A sexually-transmitted nuclear parasite
-
Hickey, D.A. 1982. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101: 519-531.
-
(1982)
Genetics
, vol.101
, pp. 519-531
-
-
Hickey, D.A.1
-
17
-
-
29444439485
-
The biology of intron gain and loss
-
Jeffares, D.C., Mourier, T., and Penny, D. 2006. The biology of intron gain and loss. Trends Genet. 22: 16-22.
-
(2006)
Trends Genet.
, vol.22
, pp. 16-22
-
-
Jeffares, D.C.1
Mourier, T.2
Penny, D.3
-
18
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
-
Kent, W.J. and Zahler, A.M. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10: 1115-1125.
-
(2000)
Genome Res.
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
19
-
-
2942669900
-
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
-
Kiontke, K., Gavin, N.P., Raynes, Y., Roehrig, C., Piano, F., and Fitch, D.H. 2004. Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proc. Natl. Acad. Sci. 101: 9003-9008.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 9003-9008
-
-
Kiontke, K.1
Gavin, N.P.2
Raynes, Y.3
Roehrig, C.4
Piano, F.5
Fitch, D.H.6
-
20
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., Fitzhugh, W., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
-
21
-
-
0032088246
-
Genome size and intron size in Drosophila
-
Moriyama, E.N., Petrov, D.A., and Hartl, D.L. 1998. Genome size and intron size in Drosophila. Mol. Biol. Evol. 15: 770-773.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 770-773
-
-
Moriyama, E.N.1
Petrov, D.A.2
Hartl, D.L.3
-
22
-
-
0038780670
-
Eukaryotic intron loss
-
Mourier, T. and Jeffares, D.C. 2003. Eukaryotic intron loss. Science 300: 1393.
-
(2003)
Science
, vol.300
, pp. 1393
-
-
Mourier, T.1
Jeffares, D.C.2
-
23
-
-
25444533019
-
Host switch leads to emergence of Plasmodium vivax malaria in humans
-
Mu, J., Joy, D.A., Duan, J., Huang, Y., Carlton, J., Walker, J., Barnwell, J., Beerli, P., Charleston, M.A., Pybus, O.G., et al. 2005. Host switch leads to emergence of Plasmodium vivax malaria in humans. Mol. Biol. Evol. 22: 1686-1693.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1686-1693
-
-
Mu, J.1
Joy, D.A.2
Duan, J.3
Huang, Y.4
Carlton, J.5
Walker, J.6
Barnwell, J.7
Beerli, P.8
Charleston, M.A.9
Pybus, O.G.10
-
24
-
-
20444376117
-
Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes
-
Neafsey, D.E., Hartl, D.L., and Berriman, M. 2005. Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes. Mol. Biol. Evol. 22: 1621-1626.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1621-1626
-
-
Neafsey, D.E.1
Hartl, D.L.2
Berriman, M.3
-
25
-
-
14044252770
-
Patterns of intron gain and loss in fungi
-
Nielsen, C.B., Friedman, B., Birren, B., Burge, C.B., and Galagan, J.E. 2004. Patterns of intron gain and loss in fungi. PLoS Biol. 2: e422.
-
(2004)
PLoS Biol.
, vol.2
-
-
Nielsen, C.B.1
Friedman, B.2
Birren, B.3
Burge, C.B.4
Galagan, J.E.5
-
26
-
-
3042548834
-
The evolutionary gain of spliceosomal introns: Sequence and phase preferences
-
Qiu, W.G., Schisler, N., and Stoltzfus, A. 2004. The evolutionary gain of spliceosomal introns: Sequence and phase preferences. Mol. Biol. Evol. 21: 1252-1263.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1252-1263
-
-
Qiu, W.G.1
Schisler, N.2
Stoltzfus, A.3
-
27
-
-
21644452778
-
Genome of the host-cell transforming parasite Theileria annulata compared with T. parva
-
Pain, A., Renauld, H., Berriman, M., Murphy, L., Yeats, C. A., Weir, W., Kerhornou, A., Aslett, M., Bishop, R., Bouchier, C., et al. 2005. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science 309: 131-133.
-
(2005)
Science
, vol.309
, pp. 131-133
-
-
Pain, A.1
Renauld, H.2
Berriman, M.3
Murphy, L.4
Yeats, C.A.5
Weir, W.6
Kerhornou, A.7
Aslett, M.8
Bishop, R.9
Bouchier, C.10
-
28
-
-
0018857156
-
The evolution of genes: The chicken preproinsulin gene
-
Perler, F., Efstratiadis, A., Lomedico, P., Gilbert, W., Kolodner, R., and Dodgson, J. 1980. The evolution of genes: the chicken preproinsulin gene. Cell 20: 555-566.
-
(1980)
Cell
, vol.20
, pp. 555-566
-
-
Perler, F.1
Efstratiadis, A.2
Lomedico, P.3
Gilbert, W.4
Kolodner, R.5
Dodgson, J.6
-
29
-
-
28444454870
-
"Clonal" population structure of the malaria agent Plasmodium falciparum in high-infection regions
-
Razakandrainibe, F.G., Durand, P., Koella, J.C., De Meeus, T., Rousset, F., Ayala, F.J., and Renaud, F. 2005. "Clonal" population structure of the malaria agent Plasmodium falciparum in high-infection regions. Proc. Natl. Acad. Sci. 102: 17388-17393.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 17388-17393
-
-
Razakandrainibe, F.G.1
Durand, P.2
Koella, J.C.3
De Meeus, T.4
Rousset, F.5
Ayala, F.J.6
Renaud, F.7
-
30
-
-
0029099904
-
Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera
-
Robertson, H.M. and Lampe, D.J. 1995. Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera. Mol. Biol. Evol. 12: 850-862.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 850-862
-
-
Robertson, H.M.1
Lampe, D.J.2
-
31
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
-
Rogozin, I.B., Wolf, Y.I., Sorokin, A.V., Mirkin, B.G., and Koonin, E.V. 2003. Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr. Biol. 13: 1512-1517.
-
(2003)
Curr. Biol.
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
32
-
-
19944429392
-
The origin of recent introns: Transposons?
-
Roy, S.W. 2004. The origin of recent introns: transposons? Genome Biol. 5: 251.
-
(2004)
Genome Biol.
, vol.5
, pp. 251
-
-
Roy, S.W.1
-
34
-
-
13844309569
-
Complex early genes
-
_. 2005b. Complex early genes. Proc. Natl. Acad. Sci. 102: 1986-1991.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 1986-1991
-
-
-
35
-
-
17644379051
-
Rates of intron loss and gain: Implications for early eukaryotic evolution
-
_. 2005c. Rates of intron loss and gain: Implications for early eukaryotic evolution. Proc. Natl. Acad. Sci. 102: 5773-5778.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 5773-5778
-
-
-
36
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles, and progress
-
_. 2006. The evolution of spliceosomal introns: Patterns, puzzles, and progress. Nat. Rev. Genet. 7: 211-221.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 211-221
-
-
-
37
-
-
33744789972
-
Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number
-
Roy, S.W. and Hartl, D.L. 2006. Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number. Genome Res. 16: 750-756.
-
(2006)
Genome Res.
, vol.16
, pp. 750-756
-
-
Roy, S.W.1
Hartl, D.L.2
-
38
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
Roy, S.W., Fedorov, A., and Gilbert, W. 2003. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc. Natl. Acad. Sci. 100: 7158-7162.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
39
-
-
17444390904
-
Analysis of the human Alu Ye lineage
-
Salem, A.H., Ray, D.A., Hedges, D.J., Jurka, J., and Batzer, M.A. 2005. Analysis of the human Alu Ye lineage. BMC Evol. Biol. 5: 18.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 18
-
-
Salem, A.H.1
Ray, D.A.2
Hedges, D.J.3
Jurka, J.4
Batzer, M.A.5
-
40
-
-
15244341492
-
High rate of horizontal transfer of transposable elements in Drosophila
-
Sanchez-Gracia, A., Maside, X., and Charlesworth, B. 2005. High rate of horizontal transfer of transposable elements in Drosophila. Trends Genet. 21: 200-203.
-
(2005)
Trends Genet.
, vol.21
, pp. 200-203
-
-
Sanchez-Gracia, A.1
Maside, X.2
Charlesworth, B.3
-
41
-
-
0035930701
-
Miniature genome in the marine chordate Oikopleura dioica
-
Seo, H.C., Kube, M., Edvardsen, R.B., Jensen, M.F., Beck, A., Spriet, E., Gorsky, G., Thompson, E.M., Lehrach, H., Reinhardt, R., et al. 2001. Miniature genome in the marine chordate Oikopleura dioica. Science 294: 2506.
-
(2001)
Science
, vol.294
, pp. 2506
-
-
Seo, H.C.1
Kube, M.2
Edvardsen, R.B.3
Jensen, M.F.4
Beck, A.5
Spriet, E.6
Gorsky, G.7
Thompson, E.M.8
Lehrach, H.9
Reinhardt, R.10
-
42
-
-
0022131865
-
On the origins of RNA splicing and introns
-
Sharp, P.A. 1985. On the origins of RNA splicing and introns. Cell 42: 397-400.
-
(1985)
Cell
, vol.42
, pp. 397-400
-
-
Sharp, P.A.1
-
43
-
-
12144268815
-
Genetic distance in housekeeping genes between Plasmodium falciparum and Plasmodium reichenowi and within P. falciparum
-
Tanabe, K., Sakihama, N., Hattori, T., Ranford-Cartwright, L., Goldman, I., Escalante, A.A., and Lal, A.A. 2004. Genetic distance in housekeeping genes between Plasmodium falciparum and Plasmodium reichenowi and within P. falciparum. J. Mol. Evol. 59: 687-694.
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 687-694
-
-
Tanabe, K.1
Sakihama, N.2
Hattori, T.3
Ranford-Cartwright, L.4
Goldman, I.5
Escalante, A.A.6
Lal, A.A.7
-
44
-
-
15444370758
-
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
-
Vanacova, S., Yan, W., Carlton, J.M., and Johnson, P.J. 2005. Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis. Proc. Natl. Acad. Sci. 102: 4430-4435.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 4430-4435
-
-
Vanacova, S.1
Yan, W.2
Carlton, J.M.3
Johnson, P.J.4
-
45
-
-
0026334859
-
Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts
-
Waters, A.P., Higgins, D.G., and McCutchan, T.F. 1991. Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts. Proc. Natl. Acad. Sci. 88: 3140-3144.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 3140-3144
-
-
Waters, A.P.1
Higgins, D.G.2
McCutchan, T.F.3
-
46
-
-
4143067041
-
High coding density on the largest Paramecium tetraurelia somatic chromosome
-
Zagulski, M., Nowak, J.K., Le Mouel, A., Nowacki, M., Migdalski, A., Gromadka, R., Noel, B., Blanc, I., Dessen, P., Wincker, P., et al. 2004. High coding density on the largest Paramecium tetraurelia somatic chromosome. Curr. Biol. 14: 1397-1404.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1397-1404
-
-
Zagulski, M.1
Nowak, J.K.2
Le Mouel, A.3
Nowacki, M.4
Migdalski, A.5
Gromadka, R.6
Noel, B.7
Blanc, I.8
Dessen, P.9
Wincker, P.10
-
47
-
-
33749373372
-
Evolutionary history and population genetics of human malaria parasites
-
(ed. I.W. Sherman), American Society for Microbiology Press, Washington, D.C.
-
Zilversmit, M. and Hartl, D.L. 2005. Evolutionary history and population genetics of human malaria parasites. In Molecular approaches to malaria (ed. I.W. Sherman), pp. 95-109. American Society for Microbiology Press, Washington, D.C.
-
(2005)
Molecular Approaches to Malaria
, pp. 95-109
-
-
Zilversmit, M.1
Hartl, D.L.2
|