Host switch leads to emergence of Plasmodium vivax malaria in humans

Molecular Biology and Evolution

Volumn 22, Issue 8, 2005, Pages 1686-1693

  Mu, Jianbing ^a   Joy, Deirdre A ^a   Duan, Junhui ^a   Huang, Yaming ^b   Carlton, Jane ^c   Walker, John ^d   Barnwell, John ^e   Beerli, Peter ^f   Charleston, Michael A ^g   Pybus, Oliver G ^h   Su, Xin Zhuan ^a  

^a NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^b CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^c J CRAIG VENTER INSTITUTE   (United States)

^d WESTMEAD HOSPITAL   (Australia)

^e CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^f FLORIDA STATE UNIVERSITY   (United States)

^g UNIVERSITY OF SYDNEY   (Australia)

^h UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Cophylogeny mapping; Host switch; Malaria; Mitochondrial DNA; Plasmodium vivax

Indexed keywords

AFRICA; ARTICLE; BAYES THEOREM; BLOOD GROUP; DEMOGRAPHY; GENE ISOLATION; GENETIC ANALYSIS; GENOME; HAPLOTYPE; HOST; HUMAN; MACACA; MALARIA; MITOCHONDRIAL GENETICS; MONKEY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMODIUM VIVAX;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; DNA, PROTOZOAN; DUFFY BLOOD-GROUP SYSTEM; GENOME, PROTOZOAN; HOST-PARASITE RELATIONS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLASMODIUM VIVAX; PRIMATES;

MACACA; PLASMODIUM SIMIUM; PLASMODIUM VIVAX; PLATYRRHINI; PRIMATES;

EID: 25444533019     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msi160     Document Type: Article

References (48)

1. Ayala, F. J., A. A. Escalante, and S. M. Rich. 1999. Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum. Parassitologia 41:55-68.
2. Beerli, P. 2002. MIGRATE v1.7.6. (http://evolution.genetics.washington. edu/lamarc.html).
3. Carter, R. 2003. Speculations on the origins of Plasmodium vivax malaria. Trends Parasitol. 19:214-219.
4. Carter, R., and K. N. Mendis. 2002. Evolutionary and historical aspects of the burden of malaria. Clin. Microbiol. Rev. 15:564-594.
5. Castelloe, J., and A. R. Templeton. 1994. Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol. Phylogenet. Evol. 3:102-113.
6. Charleston, M. A. 1998. Jungles: a new solution to the host/parasite phylogeny reconciliation problem. Math. Biosci. 149:191-223.
7. _. 2003. Recent results in cophylogeny mapping. Pp. 303-330 in D. T. J. Littewood, ed. Advances in parasitology: the evolution of parasitism - a phylogenetic perspective, 54. Elsevier Academic Press, Burlington, Mass.
8. Charleston, M. A., and R. D. M. Page. 2002. TreeMap v2.0.2. (http://taxonomy.zoology.gla.ac.uk/%7emac/treemap/index.html).
9. Chin, W., P. G. Contacos, G. R. Coatney, and H. R. Kimball. 1965. A naturally acquired quotidian-type malaria in man transferable to monkeys. Science 149:865-866.
10. Clement, M., D. Posada, and K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:1657-1660.
11. Coatney, G. R., W. E. Collins, M. Warren, and P. G. Contacos. 2003. The primate malarias. CD-ROM. CDC, Atlanta, Ga [original book published 1971, U.S. Government Printing Office, Washington, D.C.].
12. Delson, E. 1980. Fossil macaques, phyletic relationships and a scenario of deployment. Pp. 10-29 in D. G. Lindburg, ed. The macaques - studies in ecology, behavior and evolution. Van Nostrand Reinhold Co., New York.
13. Drummond, A., and A. Rambaut. 2003. BEAST v1.1.2. (http://evolve.zoo.ox. ac.uk/beast/).
14. Escalante, A. A., O. E. Cornejo, D. E. Freeland, A. C. Poe, E. Durrego, W. E. Collins, and A. A. Lal. 2005. A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite. Proc. Natl. Acad. Sci. USA 102:1980-1985.
15. Escalante, A. A., D. E. Freeland, W. E. Collins, and A. A. Lal. 1998. The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc. Natl. Acad. Sci. USA 95:8124-8129.
16. Feng, X., J. M. Carlton, D. A. Joy, J. Mu, T. Furuya, B. B. Suh, Y. Wang, J. W. Barnwell, and X.-Z. Su. 2003. Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Proc. Natl. Acad. Sci. USA 100:8502-8507.
17. Garnham, P. C. C. 1963. Distribution of simian malaria parasites in various hosts. J. Parasitol. 49:905-911.
18. _. 1966. Malaria parasites and other Haemosporidia. Blackwell Scientific, Oxford.
19. Hamblin, M. T., and A. Di Rienzo. 2000. Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. Am. J. Hum. Genet. 66:1669-1679.
20. Hamblin, M. T., E. E. Thompson, and A. D. Rienzo. 2002. Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet. 70:369-383.
21. Horuk, R., C. E. Chitnis, W. C. Darbonne, T. J. Colby, A. Rybicki, T. J. Hadley, and L. H. Miller. 1993. A receptor for the malarial parasite Plasmodium vivax; the erythrocyte chemokine receptor. Science 261:1182-1184.
22. Hudson, R. R. 2001. Two-locus sampling distributions and their application. Genetics 159:1805-1817.
23. Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
24. Jin, L., and B. Su. 2000. Natives or immigrants: modern human origin in East Asia. Nat. Rev. Genet. 1:126-133.
25. Joy, D. A., X. Feng, J. Mu et al. (12 co-authors). 2003. Early origin and recent expansion of Plasmodium falciparum. Science 300:318-321.
26. Leclerc, M. C., P. Durand, C. Gauthier, S. Patot, N. Billotte, M. Menegon, C. Severini, F. J. Ayala, and F. Renaud. 2004. Meager genetic variability of the human malaria agent Plasmodium vivax. Proc. Natl. Acad. Sci. USA: 101:14455-14460.
27. Li, J., W. E. Collins, R. A. Wirtz, D. Rathore, A. Lal, and T. F. McCutchan. 2001. Geographic subdivision of the range of the malaria parasite Plasmodium vivax. Emerg. Infect. Dis. 7:35-42.
28. Livingstone, F. B. 1984. The Duffy blood groups, vivax malaria, and malaria selection in human populations: a review. Hum. Biol. 56:413-425.
29. McVean, G. A. T., P. Awadalla, and P. Fearnhead. 2002. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160:1231-1241.
30. Miller, L., S. Mason, D. Clyde, and M. McGuiness. 1976. The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. N. Engl. J. Med. 295:302-304.
31. Nielsen, R., and Z. Yang. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936.
32. Page, S. L., and M. Goodman. 2001. Catarrhine phylogeny: non-coding DNA evidence for a diphyletic origin of the mangabeys and for a human-chimpanzee clade. Mol. Phylogenet. Evol. 18:14-25.
33. Perkins, S. L., and J. J. Schall. 2002. A molecular phylogeny of malarial parasites recovered from cytochrome b gene sequences. J. Parasitol. 88:972-978.
34. Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
35. Sawyer, S. 1989. Statistical test for detecting gene conversion. Mol. Biol. Evol. 6:526-538.
36. Schrago, C. G., and C. A. M. Russo. 2003. Timing the origin of New World monkeys. Mol. Biol. Evol. 20:1620-1625.
37. Seixas, S., N. Ferrand, and J. Rocha. 2002. Microsatellite variation and evolution of the human duffy blood group polymorphism. Mol. Biol. Evol. 19:1802-1806.
38. Sharma, I., S. T. Pasha, and Y. D. Sharma. 1998. Complete nucleotide sequence of the Plasmodium vivax 6 kb element. Mol. Biochem. Parasitol. 97:259-263.
39. Shen, G., W. Wang, Q. Wang, J. Zhao, K. Collerson, C. Zhou, and P. V. Tobias. 2002. U-Series dating of Liujiang hominid site in Guangxi, Southern China. J. Hum. Evol. 43:817-829.
40. Singh, P. B., L. Kim Sung, A. Matusop, A. Radhakrishnan, S. S. G. Shamsul, J. Cox-Singh, A. Thomas, and D. J. Conway. 2004. A large focus of naturally acquired Plasmodium knowlesi infections in human beings. Lancet 363:1017-1024.
41. Stewart, C.-B., and T. R. Disotell. 1998. Primate evolution - in and out of Africa. Curr. Biol. 8:R582-R588.
42. Swofford, D. L. 1998. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, Mass.
43. Tajima, F. 1993. Simple methods for testing the molecular clock hypothesis. Genetics 135:599-607.
44. Templeton, A. R., K. A. Crandall, and C. F. Sing. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
45. Tosi, A. J., J. C. Morales, and D. J. Melnick. 2003. Paternal, maternal, and biparental molecular markers provide unique windows onto the evolutionary history of macaque monkeys. Evolution 57:1419-1435.
46. Waters, A., D. Higgins, and T. McCutchan. 1993. Evolutionary relatedness of some primate models of Plasmodium. Mol. Biol. Evol. 10:914-923.
47. Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
48. Yang, Z., W. S. W. Wong, and R. Nielsen. 2005. Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22(4):1107-1118.