-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0026272085
-
Possible mechanisms for the maintenance of polymorphisms in Plasmodium populations
-
Arnot, D. E. 1991. Possible mechanisms for the maintenance of polymorphisms in Plasmodium populations. Acta Leiden. 60:29-35.
-
(1991)
Acta Leiden
, vol.60
, pp. 29-35
-
-
Arnot, D.E.1
-
3
-
-
0033182111
-
Evolution of L Plasmodium and the recent origin of the world populations of Plasmodium falciparum
-
Ayala, F. J., A. A. Escalante, and S. M. Rich. 1999. Evolution of L Plasmodium and the recent origin of the world populations of Plasmodium falciparum. Parasitol. 41:55-68.
-
(1999)
Parasitol.
, vol.41
, pp. 55-68
-
-
Ayala, F.J.1
Escalante, A.A.2
Rich, S.M.3
-
4
-
-
0035665493
-
Phat - A gene finding program for Plasmodium falciparum
-
Cawley, S. E., A. I. Wirth, and T. P. Speed. 2001. Phat-a gene finding program for Plasmodium falciparum. Mol. Biochem. Parasitol. 118:167-174.
-
(2001)
Mol. Biochem. Parasitol.
, vol.118
, pp. 167-174
-
-
Cawley, S.E.1
Wirth, A.I.2
Speed, T.P.3
-
5
-
-
0033765026
-
Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA
-
Conway, D. J., C. Fanello, J. M. Lloyd et al. (12 co-authors). 2000. Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA. Mol. Biochem. Parasitol. 111:163-171.
-
(2000)
Mol. Biochem. Parasitol.
, vol.111
, pp. 163-171
-
-
Conway, D.J.1
Fanello, C.2
Lloyd, J.M.3
-
6
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher, A. L., D. Harmon, S. Kasif, O. White, and S. L. Salzberg. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27:4636-4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
7
-
-
0028113391
-
Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences
-
Escalante, A. A., and F. J. Ayala. 1994. Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc. Natl. Acad. Sci. USA 91:11373-11377.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 11373-11377
-
-
Escalante, A.A.1
Ayala, F.J.2
-
8
-
-
0036746005
-
Selective pressures that decrease synonymous mutations in Plasmodium falciparum
-
Forsdyke, D. R. 2002. Selective pressures that decrease synonymous mutations in Plasmodium falciparum. Trends Parasitol. 18:411-417.
-
(2002)
Trends Parasitol.
, vol.18
, pp. 411-417
-
-
Forsdyke, D.R.1
-
9
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
Gardner, M. J., N. Hall, E. Fung et al. (45 co-authors). 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419:498-511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
-
10
-
-
0033991751
-
3′ UTR elements enhance expression of Pgs28, an ookinete protein of Plasmodium gallinaceum
-
Golightly, L. M., W. Mbacham, J. Daily, and D. F. Wirth. 2000. 3′ UTR elements enhance expression of Pgs28, an ookinete protein of Plasmodium gallinaceum. Mol. Biochem. Parasitol. 105:61-70.
-
(2000)
Mol. Biochem. Parasitol.
, vol.105
, pp. 61-70
-
-
Golightly, L.M.1
Mbacham, W.2
Daily, J.3
Wirth, D.F.4
-
11
-
-
1842486672
-
The origin of malaria: Mixed messages from genetic diversity
-
Hartl, D. L. 2004. The origin of malaria: mixed messages from genetic diversity. Nat. Rev. Microbiol. 2:15-22.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 15-22
-
-
Hartl, D.L.1
-
13
-
-
0031669928
-
Ancient polymorphism and the hypothesis of a recent bottleneck in the malaria parasite Plasmodium falciparum
-
Hughes, A. L., and F. Verra. 1998. Ancient polymorphism and the hypothesis of a recent bottleneck in the malaria parasite Plasmodium falciparum. Genetics 150:511-513.
-
(1998)
Genetics
, vol.150
, pp. 511-513
-
-
Hughes, A.L.1
Verra, F.2
-
14
-
-
0035823291
-
Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum
-
-. 2001. Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum. Proc. R. Soc. Lond. B Biol. Sci. 268:1855-1860.
-
(2001)
Proc. R. Soc. Lond. B Biol. Sci
, vol.268
, pp. 1855-1860
-
-
-
15
-
-
0036698225
-
Extensive polymorphism and ancient origin of Plasmodium falciparum
-
-. 2002. Extensive polymorphism and ancient origin of Plasmodium falciparum. Trends Parasitol. 18:348-351.
-
(2002)
Trends Parasitol
, vol.18
, pp. 348-351
-
-
-
16
-
-
0036728807
-
The extent of nucleotide polymorphism is highly variable across a 3-kb region on Plasmodium falciparum chromosome 2
-
Jongwutiwes, S., C. Putaporntip, R. Friedman, and A. L. Hughes. 2002. The extent of nucleotide polymorphism is highly variable across a 3-kb region on Plasmodium falciparum chromosome 2. Mol. Biol. Evol. 19:1585-1590.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1585-1590
-
-
Jongwutiwes, S.1
Putaporntip, C.2
Friedman, R.3
Hughes, A.L.4
-
17
-
-
0037224621
-
Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases
-
Kondrashov, A. S. 2003. Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases. Hum. Mutat. 21:12-27.
-
(2003)
Hum. Mutat.
, vol.21
, pp. 12-27
-
-
Kondrashov, A.S.1
-
18
-
-
1642554364
-
Identification of regulatory elements in the Plasmodium falciparum genome
-
Militello, K. T., M. Dodge, L. Bethke, and D. F. Wirth. 2004. Identification of regulatory elements in the Plasmodium falciparum genome. Mol. Biochem. Parasitol. 134:75-88.
-
(2004)
Mol. Biochem. Parasitol.
, vol.134
, pp. 75-88
-
-
Militello, K.T.1
Dodge, M.2
Bethke, L.3
Wirth, D.F.4
-
19
-
-
0033181623
-
Molecular evolution of coding and non-coding regions in Plasmodium
-
Pizzi, E., and C. Frontali. 1999. Molecular evolution of coding and non-coding regions in Plasmodium. Parassitologia 41:89-91.
-
(1999)
Parassitologia
, vol.41
, pp. 89-91
-
-
Pizzi, E.1
Frontali, C.2
-
20
-
-
0033918079
-
Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia
-
. 2000. Divergence of noncoding sequences and of insertions encoding nonglobular domains at a genomic region well conserved in plasmodia. J. Mol. Evol. 50:474-480.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 474-480
-
-
-
21
-
-
0026164394
-
Plasmodium falciparum: Evidence for a DNA methylation pattern
-
Pollack, Y., N. Kogan, and J. Golenser. 1991. Plasmodium falciparum: evidence for a DNA methylation pattern. Exp. Parasitol. 72:339-344.
-
(1991)
Exp. Parasitol.
, vol.72
, pp. 339-344
-
-
Pollack, Y.1
Kogan, N.2
Golenser, J.3
-
22
-
-
0034849136
-
Strong diversifying selection on domains of the Plasmodium falciparum apical membrane antigen 1 gene
-
Polley, S. D., and D. J. Conway. 2001. Strong diversifying selection on domains of the Plasmodium falciparum apical membrane antigen 1 gene. Genetics 158:1505-1512.
-
(2001)
Genetics
, vol.158
, pp. 1505-1512
-
-
Polley, S.D.1
Conway, D.J.2
-
23
-
-
0031669929
-
The recent origin of allelic variation in antigenic determinants of Plasmodium falciparum
-
Rich, S. M., and F. J. Ayala. 1998. The recent origin of allelic variation in antigenic determinants of Plasmodium falciparum. Genetics 150:515-517.
-
(1998)
Genetics
, vol.150
, pp. 515-517
-
-
Rich, S.M.1
Ayala, F.J.2
-
24
-
-
0034691080
-
Population structure and recent evolution of Plasmodium falciparum
-
-. 2000. Population structure and recent evolution of Plasmodium falciparum. Proc. Natl. Acad. Sci. USA 97:6994-7001.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6994-7001
-
-
-
25
-
-
0032516099
-
Malaria's Eve: Evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum
-
Rich, S. M., M. C. Licht, R. R. Hudson, and F. J. Ayala. 1998. Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum. Proc. Natl. Acad. Sci. USA 95:4425-4430.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4425-4430
-
-
Rich, S.M.1
Licht, M.C.2
Hudson, R.R.3
Ayala, F.J.4
-
26
-
-
0034284669
-
The origin of antigenic diversity in Plasmodium falciparum
-
Rich, S. M., M. U. Ferreira, and F. J. Ayala. 2000. The origin of antigenic diversity in Plasmodium falciparum. Parasitol. Today 16:390-396.
-
(2000)
Parasitol. Today
, vol.16
, pp. 390-396
-
-
Rich, S.M.1
Ferreira, M.U.2
Ayala, F.J.3
-
27
-
-
85058248305
-
Circumsporozoite polymorphisms, silent mutations and the evolution of Plasmodium falciparum
-
Saul, A. 1999. Circumsporozoite polymorphisms, silent mutations and the evolution of Plasmodium falciparum. Parasitol. Today 15:38-40.
-
(1999)
Parasitol. Today
, vol.15
, pp. 38-40
-
-
Saul, A.1
-
29
-
-
15544387147
-
Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster
-
Singh, N. D., P. F. Arndt, and D. A. Petrov. 2004. Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. Genetics 169:709-722.
-
(2004)
Genetics
, vol.169
, pp. 709-722
-
-
Singh, N.D.1
Arndt, P.F.2
Petrov, D.A.3
-
30
-
-
0038781903
-
Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
-
Subramanian, S., and S. Kumar. 2003. Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. Genome Res. 13:838-844.
-
(2003)
Genome Res.
, vol.13
, pp. 838-844
-
-
Subramanian, S.1
Kumar, S.2
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
0033991187
-
Evidence for ancient balanced polymorphism at the apical membrane antigen-1 (AMA-1) locus of Plasmodium falciparum
-
Verra, F., and A. L. Hughes. 2000. Evidence for ancient balanced polymorphism at the apical membrane antigen-1 (AMA-1) locus of Plasmodium falciparum. Mol. Biochem. Parasitol. 105:149-153.
-
(2000)
Mol. Biochem. Parasitol.
, vol.105
, pp. 149-153
-
-
Verra, F.1
Hughes, A.L.2
-
33
-
-
0035919665
-
Recent origin of Plasmodium falciparum from a single progenitor
-
Volkman, S. K., A. E. Barry, E. J. Lyons, K. M. Nielsen, S. M. Thomas, M. Choi, S. S. Thakore, K. P. Day, D. F. Wirth, and D. L. Hartl. 2001. Recent origin of Plasmodium falciparum from a single progenitor. Science 293:482-484.
-
(2001)
Science
, vol.293
, pp. 482-484
-
-
Volkman, S.K.1
Barry, A.E.2
Lyons, E.J.3
Nielsen, K.M.4
Thomas, S.M.5
Choi, M.6
Thakore, S.S.7
Day, K.P.8
Wirth, D.F.9
Hartl, D.L.10
-
34
-
-
0037020039
-
Excess polymorphisms in genes for membrane proteins in Plasmodium falciparum
-
Volkman, S. K., D. L. Hartl, D. F. Wirth. et al. (11 co-authors). 2002. Excess polymorphisms in genes for membrane proteins in Plasmodium falciparum. Science 298:216-218.
-
(2002)
Science
, vol.298
, pp. 216-218
-
-
Volkman, S.K.1
Hartl, D.L.2
Wirth, D.F.3
-
35
-
-
0037193658
-
Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: Identification of novel genes and diverse transcription start sites of messenger RNAs
-
Watanabe, J., M. Sasaki, Y. Suzuki, and S. Sugano. 2002. Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs. Gene 291:105-113.
-
(2002)
Gene
, vol.291
, pp. 105-113
-
-
Watanabe, J.1
Sasaki, M.2
Suzuki, Y.3
Sugano, S.4
-
36
-
-
4944229463
-
Gene expression, synteny, and local similarity in human non-coding mutation rates
-
Webster, M. T., N. G. Smith, M. J. Lercher, and H. Ellegren. 2004. Gene expression, synteny, and local similarity in human non-coding mutation rates. Mol. Biol. Evol. 21:1820-1830.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1820-1830
-
-
Webster, M.T.1
Smith, N.G.2
Lercher, M.J.3
Ellegren, H.4
|