-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-5.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl SM, Simpson AGB, Farmer MA, et al. (28 co-authors). 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 52: 399-451.
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.B.2
Farmer, M.A.3
-
3
-
-
0037229220
-
A novel polyubiquitin structure in Cercozoa and Foraminifera: Evidence for a new eukaryotic supergroup
-
Archibald JM, Longet D, Pawlowski J, Keeling PJ. 2003. A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol 20:62-6.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 62-66
-
-
Archibald, J.M.1
Longet, D.2
Pawlowski, J.3
Keeling, P.J.4
-
4
-
-
0038714278
-
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
-
Archibald JM, Rogers MB, Toop M, Ishida KI, Keeling PJ. 2003. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci 100:7678-83.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 7678-7683
-
-
Archibald, J.M.1
Rogers, M.B.2
Toop, M.3
Ishida, K.I.4
Keeling, P.J.5
-
5
-
-
14544283723
-
Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
-
Arisue N, Hasegawa M, Hashimoto T. 2005. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol Biol Evol 22:409-20.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 409-420
-
-
Arisue, N.1
Hasegawa, M.2
Hashimoto, T.3
-
6
-
-
0027138675
-
Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
-
Baldauf SL, Palmer JD. 1993. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc Natl Acad Sci USA 90:11558-62.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11558-11562
-
-
Baldauf, S.L.1
Palmer, J.D.2
-
7
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolitle WF. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-7.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolitle, W.F.4
-
8
-
-
0037022379
-
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
-
Bapteste E, Brinkmann H, Lee JA, et al. (11 co-authors). 2002. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc Natl Acad Sci USA 99:1414-9.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 1414-1419
-
-
Bapteste, E.1
Brinkmann, H.2
Lee, J.A.3
-
9
-
-
20444446106
-
Polyubiquitin insertions and the phylogeny of Cercotoa and Rhizaria
-
Bass D, Moreira D, Purificacion L, Polet S, Chao E, von der Heyden S, Pawlowski J, Cavalier-Smith T. 2005. Polyubiquitin insertions and the phylogeny of Cercotoa and Rhizaria. Protist 156:149-61.
-
(2005)
Protist
, vol.156
, pp. 149-161
-
-
Bass, D.1
Moreira, D.2
Purificacion, L.3
Polet, S.4
Chao, E.5
Von Der Heyden, S.6
Pawlowski, J.7
Cavalier-Smith, T.8
-
10
-
-
0348011481
-
Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa
-
Berney C, Pawlowski J. 2003. Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. J Mol Evol 57:S120-7.
-
(2003)
J Mol Evol
, vol.57
-
-
Berney, C.1
Pawlowski, J.2
-
11
-
-
0029105272
-
Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent Rhizopod lineage containing the Euglyphida and the Chlorarachniophyta
-
Bhattacharya D, Helmchen T, Melkonian M. 1995. Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent Rhizopod lineage containing the Euglyphida and the Chlorarachniophyta. J Eukaryot Microbiol 42:65-9.
-
(1995)
J Eukaryot Microbiol
, vol.42
, pp. 65-69
-
-
Bhattacharya, D.1
Helmchen, T.2
Melkonian, M.3
-
12
-
-
27744524191
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
-
Brinkmann H, Giezen M, Zhou Y, Poncelin de Raucourt G, Philippe H. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol 54:743-57.
-
(2005)
Syst Biol
, vol.54
, pp. 743-757
-
-
Brinkmann, H.1
Giezen, M.2
Zhou, Y.3
Poncelin De Raucourt, G.4
Philippe, H.5
-
13
-
-
0036746494
-
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA
-
Burki F, Berney C, Pawlowski J. 2002. Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist 153:251-60.
-
(2002)
Protist
, vol.153
, pp. 251-260
-
-
Burki, F.1
Berney, C.2
Pawlowski, J.3
-
14
-
-
33748806396
-
Analysis of expressed sequence tags (ESTs) from a naked foraminiferan Reticulomyxa filosa
-
Forthcoming
-
Burki F, Nikolaev S, Bolivar I, Guiard J, Pawlowski J. 2006. Analysis of expressed sequence tags (ESTs) from a naked foraminiferan Reticulomyxa filosa. Genome. Forthcoming.
-
(2006)
Genome
-
-
Burki, F.1
Nikolaev, S.2
Bolivar, I.3
Guiard, J.4
Pawlowski, J.5
-
15
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-52.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
16
-
-
0027145102
-
Kingdom protozoa and its 18 phyla
-
Cavalier-Smith T. 1993. Kingdom protozoa and its 18 phyla. Microbiol Rev 57:953-94.
-
(1993)
Microbiol Rev
, vol.57
, pp. 953-994
-
-
Cavalier-Smith, T.1
-
17
-
-
0031663016
-
A revised six-kingdom system of life
-
Cavalier-Smith T. 1998. A revised six-kingdom system of life. Biol Rev Camb Philos Soc 73:203-66.
-
(1998)
Biol Rev Camb Philos Soc
, vol.73
, pp. 203-266
-
-
Cavalier-Smith, T.1
-
18
-
-
0032838597
-
Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
-
Cavalier-Smith T. 1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46:347-66.
-
(1999)
J Eukaryot Microbiol
, vol.46
, pp. 347-366
-
-
Cavalier-Smith, T.1
-
19
-
-
0036208071
-
The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa
-
Cavalier-Smith T. 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. Int J Syst Evol Microbiol 52:297-354.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 297-354
-
-
Cavalier-Smith, T.1
-
20
-
-
0030853333
-
Sarcomonad ribosomal RNA sequences, rhizopod phylogeny and the origin of euglyphid amoebae
-
Cavalier-Smith T, Chao EE. 1997. Sarcomonad ribosomal RNA sequences, rhizopod phylogeny and the origin of euglyphid amoebae. Arch Protistenkd 147:227-36.
-
(1997)
Arch Protistenkd
, vol.147
, pp. 227-236
-
-
Cavalier-Smith, T.1
Chao, E.E.2
-
21
-
-
0242456821
-
Phylogeny and classification of phylum Cercozoa (Protozoa)
-
Cavalier-Smith T, Chao EE. 2003. Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 154:341-58.
-
(2003)
Protist
, vol.154
, pp. 341-358
-
-
Cavalier-Smith, T.1
Chao, E.E.2
-
22
-
-
22744454130
-
Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium
-
de Koning A, Tartar A, Boucias D, Keeling P. 2005. Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium. Protist 156:181-90.
-
(2005)
Protist
, vol.156
, pp. 181-190
-
-
De Koning, A.1
Tartar, A.2
Boucias, D.3
Keeling, P.4
-
23
-
-
0035103466
-
Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
-
Fast NM, Kissinger JC, Roos DS, Keeling PJ. 2001. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18:418-26.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 418-426
-
-
Fast, N.M.1
Kissinger, J.C.2
Roos, D.S.3
Keeling, P.J.4
-
24
-
-
0036124759
-
Re-examining alveolate evolution using multiple protein molecular phylogenies
-
Fast NM, Xue L, Bingham S, Keeling P. 2002. Re-examining alveolate evolution using multiple protein molecular phylogenies. J Eukaryot Microbiol 49:30-7.
-
(2002)
J Eukaryot Microbiol
, vol.49
, pp. 30-37
-
-
Fast, N.M.1
Xue, L.2
Bingham, S.3
Keeling, P.4
-
25
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401-10.
-
(1978)
Syst Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
26
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 40:783-91.
-
(1985)
Evolution
, vol.40
, pp. 783-791
-
-
Felsenstein, J.1
-
29
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
30
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall T. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-8.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.1
-
31
-
-
27844547962
-
Inference of the phylogenetic position of oxymonads based on nine genes: Support for Metamonada and Excavata
-
Hampl V, Horner DS, Dyal P, Kulda J, Flegr J, Foster PG, Embley TM. 2005. Inference of the phylogenetic position of oxymonads based on nine genes: support for Metamonada and Excavata. Mol Biol Evol 22:2508-18.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2508-2518
-
-
Hampl, V.1
Horner, D.S.2
Dyal, P.3
Kulda, J.4
Flegr, J.5
Foster, P.G.6
Embley, T.M.7
-
32
-
-
0344440735
-
Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for the chromalveolate plastids
-
Harper JT, Keeling PJ. 2003. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for the chromalveolate plastids. Mol Biol Evol 20:1730-5.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1730-1735
-
-
Harper, J.T.1
Keeling, P.J.2
-
33
-
-
13244270095
-
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
-
Harper JT, Waanders E, Keeling PJ. 2005. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 55:487-96.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 487-496
-
-
Harper, J.T.1
Waanders, E.2
Keeling, P.J.3
-
35
-
-
13444259388
-
TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4:18.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 18
-
-
Jobb, G.1
Von Haeseler, A.2
Strimmer, K.3
-
36
-
-
0034903594
-
Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
-
Keeling PJ. 2001. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol Biol Evol 18: 1551-7.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1551-1557
-
-
Keeling, P.J.1
-
37
-
-
27444442657
-
The tree of eukaryotes
-
Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. 2005. The tree of eukaryotes. Trends Ecol Evol 20:670-6.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 670-676
-
-
Keeling, P.J.1
Burger, G.2
Durnford, D.G.3
Lang, B.F.4
Lee, R.W.5
Pearlman, R.E.6
Roger, A.J.7
Gray, M.W.8
-
38
-
-
0035845578
-
Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase
-
Keeling P, Palmer J. 2001. Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc Natl Acad Sci USA 98:10745-50.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10745-10750
-
-
Keeling, P.1
Palmer, J.2
-
39
-
-
0029876868
-
Evolutionary relationships of eukaryotic kingdoms
-
Kumar S, Rzhetsky A. 1996. Evolutionary relationships of eukaryotic kingdoms. J Mol Evol 42:183-93.
-
(1996)
J Mol Evol
, vol.42
, pp. 183-193
-
-
Kumar, S.1
Rzhetsky, A.2
-
40
-
-
0042666874
-
Morphostasis in alveolate evolution
-
Leander B, Keeling P. 2003. Morphostasis in alveolate evolution. Trends Ecol Evol 18:498-504.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 498-504
-
-
Leander, B.1
Keeling, P.2
-
41
-
-
1842422548
-
Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies
-
Leander B, Keeling P. 2004. Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies. J Phycol 40:341-50.
-
(2004)
J Phycol
, vol.40
, pp. 341-350
-
-
Leander, B.1
Keeling, P.2
-
42
-
-
0344897110
-
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies
-
Longet D, Archibald JM, Keeling PJ, Pawlowski J. 2003. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int J Syst Evol Microbiol 53:1735-9.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1735-1739
-
-
Longet, D.1
Archibald, J.M.2
Keeling, P.J.3
Pawlowski, J.4
-
43
-
-
9744238179
-
Multigene evidence for close evolutionary relations between Gromia and Foraminifera
-
Longet D, Burki F, Flakowski J, Berney C, Polet S, Fahrni J, Pawlowski J. 2004. Multigene evidence for close evolutionary relations between Gromia and Foraminifera. Acta Protozool 43:303-11.
-
(2004)
Acta Protozool
, vol.43
, pp. 303-311
-
-
Longet, D.1
Burki, F.2
Flakowski, J.3
Berney, C.4
Polet, S.5
Fahrni, J.6
Pawlowski, J.7
-
44
-
-
0033000133
-
Unusually high evolutionary rate of the elongation factor 1 alpha genes from the Ciliophora and its impact on the phylogeny of eukaryotes
-
Moreira D, Le Guyader H, Philippe H. 1999. Unusually high evolutionary rate of the elongation factor 1 alpha genes from the Ciliophora and its impact on the phylogeny of eukaryotes. Mol Biol Evol 16:234-45.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 234-245
-
-
Moreira, D.1
Le Guyader, H.2
Philippe, H.3
-
45
-
-
0034103919
-
Long branch attraction effects and the status of "basal eukaryotes": Phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living diplomonad Trepomonas agilis
-
Morin L. 2000. Long branch attraction effects and the status of "basal eukaryotes": phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living diplomonad Trepomonas agilis. J Eukaryot Microbiol 47:167-77.
-
(2000)
J Eukaryot Microbiol
, vol.47
, pp. 167-177
-
-
Morin, L.1
-
46
-
-
2542512417
-
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
-
Nikolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP, Aleshin VV, Petrov NB, Pawlowski J. 2004. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci USA 101:8066-71.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8066-8071
-
-
Nikolaev, S.I.1
Berney, C.2
Fahrni, J.F.3
Bolivar, I.4
Polet, S.5
Mylnikov, A.P.6
Aleshin, V.V.7
Petrov, N.B.8
Pawlowski, J.9
-
47
-
-
0030043451
-
Early origin of foraminifera suggested by SSU rRNA gene sequences
-
Pawlowski J, Bolivar I, Fahrni J, Cavalier-Smith T, Gouy M. 1996. Early origin of foraminifera suggested by SSU rRNA gene sequences. Mol Biol Evol 13:445-50.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 445-450
-
-
Pawlowski, J.1
Bolivar, I.2
Fahrni, J.3
Cavalier-Smith, T.4
Gouy, M.5
-
48
-
-
0034503382
-
Opinion: Long branch attraction and protists phylogeny
-
Philippe H. 2000. Opinion: long branch attraction and protists phylogeny. Protist 151:307-16.
-
(2000)
Protist
, vol.151
, pp. 307-316
-
-
Philippe, H.1
-
49
-
-
0002214837
-
The molecular phylogeny of Eukaryote: Solid facts and uncertainties
-
Coombs G, Vickerman K, Sleigh M, Warren A, editors. London: Chapman and Hall
-
Philippe H, Adoutte A. 1998. The molecular phylogeny of Eukaryote: solid facts and uncertainties. In: Coombs G, Vickerman K, Sleigh M, Warren A, editors. Evolutionary relationships among Protozoa. London: Chapman and Hall. p 25-56.
-
(1998)
Evolutionary Relationships among Protozoa
, pp. 25-56
-
-
Philippe, H.1
Adoutte, A.2
-
50
-
-
0034019771
-
Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
-
Philippe H, Germot A. 2000. Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution. Mol Biol Evol 17:830-4.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 830-834
-
-
Philippe, H.1
Germot, A.2
-
51
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
-
Philippe H, Lartillot N, Brinkmann H. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol 22:1246-53.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
Lartillot, N.2
Brinkmann, H.3
-
52
-
-
0034702256
-
Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions
-
Philippe H, Lopez P, Brinkmann H, Budin K, Germot A, Laurent J, Moreira D, Muller M, Le Guyader H. 2000. Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions. Proc R Soc Lond B Biol Sci 267:1213-21.
-
(2000)
Proc R Soc Lond B Biol Sci
, vol.267
, pp. 1213-1221
-
-
Philippe, H.1
Lopez, P.2
Brinkmann, H.3
Budin, K.4
Germot, A.5
Laurent, J.6
Moreira, D.7
Muller, M.8
Le Guyader, H.9
-
53
-
-
4143122089
-
Phylogenomics of eukaryotes: Impact of missing data on large alignments
-
Philippe H, Snell EA, Bapteste E, Lopez P, Holland PWH, Casane D. 2004. Phylogenomics of eukaryotes: impact of missing data on large alignments. Mol Biol Evol 21:1740-52.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1740-1752
-
-
Philippe, H.1
Snell, E.A.2
Bapteste, E.3
Lopez, P.4
Holland, P.W.H.5
Casane, D.6
-
54
-
-
1942476878
-
Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria
-
Polet S, Berney C, Fahrni J, Pawlowski J. 2004. Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist 155:53-63.
-
(2004)
Protist
, vol.155
, pp. 53-63
-
-
Polet, S.1
Berney, C.2
Fahrni, J.3
Pawlowski, J.4
-
55
-
-
9644301241
-
Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D, Buckley T. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53:793-808.
-
(2004)
Syst Biol
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.2
-
56
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
-
Rodriguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, Loffelhardt W, Bohnert HJ, Philippe H, Lang BF. 2005. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol 15:1325-30.
-
(2005)
Curr Biol
, vol.15
, pp. 1325-1330
-
-
Rodriguez-Ezpeleta, N.1
Brinkmann, H.2
Burey, S.C.3
Roure, B.4
Burger, G.5
Loffelhardt, W.6
Bohnert, H.J.7
Philippe, H.8
Lang, B.F.9
-
57
-
-
5344249429
-
Plastid-targeting peptides from the Chlorarachniophyte Bigelowiella natans
-
Rogers MB, Archibald JM, Field M, Li C, Strieped B, Keeling PJ. 2004. Plastid-targeting peptides from the Chlorarachniophyte Bigelowiella natans. J Eukaryot Microbiol 51:529-35.
-
(2004)
J Eukaryot Microbiol
, vol.51
, pp. 529-535
-
-
Rogers, M.B.1
Archibald, J.M.2
Field, M.3
Li, C.4
Strieped, B.5
Keeling, P.J.6
-
58
-
-
29344441657
-
Animal evolution and the molecular signature of radiations compressed in time
-
Rokas A, Kruger D, Caroll SB. 2005. Animal evolution and the molecular signature of radiations compressed in time. Science 310:1933-8.
-
(2005)
Science
, vol.310
, pp. 1933-1938
-
-
Rokas, A.1
Kruger, D.2
Caroll, S.B.3
-
59
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-4.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
60
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol 51:492-508.
-
(2002)
Syst Biol
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
61
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-7.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
62
-
-
33244466796
-
Comprehensive multi-gene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes
-
Simpson AGB, Inagaki Y, Roger AJ. 2006. Comprehensive multi-gene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes. Mol Biol Evol 23:615-25.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 615-625
-
-
Simpson, A.G.B.1
Inagaki, Y.2
Roger, A.J.3
-
63
-
-
0036069962
-
How oxymonads lost their groove: An ultrastructural comparison of Monocercomonoides and excavate taxa
-
Simpson AGB, Radek R, Dacks J, O'Kelly C. 2002. How oxymonads lost their groove: an ultrastructural comparison of Monocercomonoides and excavate taxa. J Eukaryot Microbiol 49:239-48.
-
(2002)
J Eukaryot Microbiol
, vol.49
, pp. 239-248
-
-
Simpson, A.G.B.1
Radek, R.2
Dacks, J.3
O'Kelly, C.4
-
64
-
-
0036791132
-
Evolutionary history of "early-diverging" eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia
-
Simpson AGB, Roger AJ, Silberman JD, Leipe DD, Edgcomb VP, Jermiin LS, Patterson DJ, Sogin ML. 2002. Evolutionary history of "early- diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia. Mol Biol Evol 19:1782-91.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1782-1791
-
-
Simpson, A.G.B.1
Roger, A.J.2
Silberman, J.D.3
Leipe, D.D.4
Edgcomb, V.P.5
Jermiin, L.S.6
Patterson, D.J.7
Sogin, M.L.8
-
65
-
-
0026282909
-
Early evolution and the origin of eukaryotes
-
Sogin M. 1991. Early evolution and the origin of eukaryotes. Curr Opin Genet Dev 1:457-63.
-
(1991)
Curr Opin Genet Dev
, vol.1
, pp. 457-463
-
-
Sogin, M.1
-
66
-
-
0024962760
-
Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia
-
Sogin ML, Gunderson J, Elwood H, Alonso R, Peattie D. 1989. Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75-7.
-
(1989)
Science
, vol.243
, pp. 75-77
-
-
Sogin, M.L.1
Gunderson, J.2
Elwood, H.3
Alonso, R.4
Peattie, D.5
-
67
-
-
0031893975
-
Evolution of the protists and protistan parasites from the perspective of molecular systematics
-
Sogin ML, Silberman JD. 1998. Evolution of the protists and protistan parasites from the perspective of molecular systematics. Int J Parasitol 28:11-20.
-
(1998)
Int J Parasitol
, vol.28
, pp. 11-20
-
-
Sogin, M.L.1
Silberman, J.D.2
-
68
-
-
0037025197
-
Rooting the eukaryote tree by using a derived gene fusion
-
Stechmann A, Cavalier-Smith T. 2002. Rooting the eukaryote tree by using a derived gene fusion. Science 297:89-91.
-
(2002)
Science
, vol.297
, pp. 89-91
-
-
Stechmann, A.1
Cavalier-Smith, T.2
-
69
-
-
0041919404
-
The root of the eukaryote tree pinpointed
-
Stechmann A, Cavalier-Smith T. 2003. The root of the eukaryote tree pinpointed. Curr Biol 13:R665-6.
-
(2003)
Curr Biol
, vol.13
-
-
Stechmann, A.1
Cavalier-Smith, T.2
-
71
-
-
0032871269
-
Long-branch attraction and the rDNA model of early eukaryotic evolution
-
Stiller JW, Hall BD. 1999. Long-branch attraction and the rDNA model of early eukaryotic evolution. Mol Biol Evol 16: 1270-9.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1270-1279
-
-
Stiller, J.W.1
Hall, B.D.2
-
72
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J, Higgins D, Gibson T. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
73
-
-
0031015293
-
Phylogenetic position of the mitochondrion-lacking protozoan Trichomonas tenax, based on amino acid sequences of elongation factors 1
-
Yamamoto A, Hashimoto T, Asaga E, Hasegawa M, Goto N. 1997. Phylogenetic position of the mitochondrion-lacking protozoan Trichomonas tenax, based on amino acid sequences of elongation factors 1. J Mol Evol 44:98-105.
-
(1997)
J Mol Evol
, vol.44
, pp. 98-105
-
-
Yamamoto, A.1
Hashimoto, T.2
Asaga, E.3
Hasegawa, M.4
Goto, N.5
-
74
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-6.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
75
-
-
0037180558
-
The single, ancient origin of chromist plastids
-
Yoon HS, Hackett JD, Pinto G, Bhattacharya D. 2002. The single, ancient origin of chromist plastids. Proc Natl Acad Sci USA 99:15507-12.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15507-15512
-
-
Yoon, H.S.1
Hackett, J.D.2
Pinto, G.3
Bhattacharya, D.4
-
76
-
-
1942469414
-
A molecular timeline for the origin of photosynthetic eukaryotes
-
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D. 2004. A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol 21:809-18.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 809-818
-
-
Yoon, H.S.1
Hackett, J.D.2
Ciniglia, C.3
Pinto, G.4
Bhattacharya, D.5
|