메뉴 건너뛰기




Volumn 35, Issue 2, 2005, Pages 93-102

Actin phylogeny of foraminifera

Author keywords

[No Author keywords available]

Indexed keywords

FORAMINIFERA; PHYLOGENY;

EID: 18944370747     PISSN: 00961191     EISSN: None     Source Type: Journal    
DOI: 10.2113/35.2.93     Document Type: Article
Times cited : (41)

References (49)
  • 2
    • 0037229220 scopus 로고    scopus 로고
    • A novel polyubiquitin structure in Cercozoa and Foraminifera: Evidence for a new eukaryotic supergroup
    • ARCHIBALD, J. M., LONGET, D., PAWLOWSKI, J., and KEELING, P. J., 2003, A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup: Molecular Biology and Evolution, v. 20, p. 62-66.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 62-66
    • Archibald, J.M.1    Longet, D.2    Pawlowski, J.3    Keeling, P.J.4
  • 3
    • 1242321982 scopus 로고    scopus 로고
    • Actin and ubiquitin protein sequences support a cercozoan/foraminieran ancestry for the plasmodiophorid plant pathogens
    • _, and KEELING, P. J., 2004, Actin and ubiquitin protein sequences support a cercozoan/foraminieran ancestry for the plasmodiophorid plant pathogens: Journal of Eukaryotic Microbiology, v. 51, p. 113-118.
    • (2004) Journal of Eukaryotic Microbiology , vol.51 , pp. 113-118
    • Keeling, P.J.1
  • 4
    • 0008252868 scopus 로고
    • An allogromiid ancestor of the miliolidean foraminifera
    • ARNOLD, Z. M., 1978a, An allogromiid ancestor of the miliolidean foraminifera: Journal of Foraminiferal Research, v. 8, p. 83.
    • (1978) Journal of Foraminiferal Research , vol.8 , pp. 83
    • Arnold, Z.M.1
  • 5
    • 18944371775 scopus 로고
    • Biological evidence for the origin of polythalamy in foraminifera
    • _, 1978b, Biological evidence for the origin of polythalamy in foraminifera: Journal of Foraminiferal Research, v. 8, p. 147.
    • (1978) Journal of Foraminiferal Research , vol.8 , pp. 147
  • 6
    • 0348011481 scopus 로고    scopus 로고
    • Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa
    • BERNEY, C., and PAWLOWSKI, J., 2003, Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa: Journal of Molecular Evolution, v. 57 (suppl. 1), p. 120-127.
    • (2003) Journal of Molecular Evolution , vol.57 , Issue.SUPPL. 1 , pp. 120-127
    • Berney, C.1    Pawlowski, J.2
  • 7
    • 0035207791 scopus 로고    scopus 로고
    • SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of gymnamoebae revisited
    • BOLIVAR, I., FAHRNI, J. F., SMIRNOV, A., and PAWLOWSKI, J., 2001, SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): the origin of gymnamoebae revisited: Molecular Biology and Evolution, v. 18, p. 2306-2314.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 2306-2314
    • Bolivar, I.1    Fahrni, J.F.2    Smirnov, A.3    Pawlowski, J.4
  • 8
    • 0001213913 scopus 로고
    • Larger agglutinated foraminifera of McMurdo sound, antarctica: Are Astrammina rara and Notodendrodes antarctikos allogromids incognito?
    • BOWSER, S. S., GOODAY, A. J., ALEXANDER, S. P., and BERNHARD, J., 1995, Larger agglutinated foraminifera of McMurdo Sound, Antarctica: Are Astrammina rara and Notodendrodes antarctikos allogromids incognito?: Marine Micropaleontology, v. 26, p. 75-88.
    • (1995) Marine Micropaleontology , vol.26 , pp. 75-88
    • Bowser, S.S.1    Gooday, A.J.2    Alexander, S.P.3    Bernhard, J.4
  • 9
    • 0242456821 scopus 로고    scopus 로고
    • Phylogeny and classification of phylum Cercozoa (Protozoa)
    • CAVALIER-SMITH, T., and CHAO, E. E., 2003, Phylogeny and classification of phylum Cercozoa (Protozoa): Protist, v. 154, p. 341-358.
    • (2003) Protist , vol.154 , pp. 341-358
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 10
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by guanidinium thiocyanate-phenol- chloroform extraction
    • CHOMCZYNSKI, P., and SACCHI, N., 1987, Single-step method of RNA isolation by guanidinium thiocyanate-phenol-chloroform extraction: Analytical Biochemistry, v. 162, p. 156-159.
    • (1987) Analytical Biochemistry , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 11
    • 0001257936 scopus 로고    scopus 로고
    • The isolation and amplification of the 18S ribosomal RNA gene from planktonic foraminifers using gametogenic specimens
    • Moguilevski, A., and Whatley, R.C. (eds.), Aberystwyth, April 19-21, 1994: University of Wales, Aberystwyth Press
    • DARLING, K. F., KROON, D., WADE, C. M., and LEIGH-BROWN, A., 1996. The isolation and amplification of the 18S ribosomal RNA gene from planktonic foraminifers using gametogenic specimens, in: Moguilevski, A., and Whatley, R.C. (eds.), Microfossils and Oceanic Environments: Proceedings of the "OOP and the Marine Biosphere" International Conference, Aberystwyth, April 19-21, 1994: University of Wales, Aberystwyth Press, p. 249-259.
    • (1996) Microfossils and Oceanic Environments: Proceedings of the "OOP and the Marine Biosphere" International Conference , pp. 249-259
    • Darling, K.F.1    Kroon, D.2    Wade, C.M.3    Leigh-Brown, A.4
  • 12
    • 0030620859 scopus 로고    scopus 로고
    • Planktonic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa
    • _, WADE, C. M., KROON, D., and LEIGH BROWN, A. J., 1997, Planktonic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa: Marine Micropaleontology, v. 30, p. 251-66.
    • (1997) Marine Micropaleontology , vol.30 , pp. 251-266
    • Wade, C.M.1    Kroon, D.2    Leigh Brown, A.J.3
  • 13
    • 0030760563 scopus 로고    scopus 로고
    • Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record
    • DE VARGAS, C., ZANINETTI L., HILBRECHT H., and PAWLOWSKI, J., 1997. Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record: Journal of Molecular Evolution, v. 45(3), p. 285-294.
    • (1997) Journal of Molecular Evolution , vol.45 , Issue.3 , pp. 285-294
    • De Vargas, C.1    Zaninetti, L.2    Hilbrecht, H.3    Pawlowski, J.4
  • 14
    • 0029111288 scopus 로고
    • Identification of actins in foraminifera: Phylogenetic perspective
    • FAHRNI, J. F., and PAWLOWSKI, J., 1995, Identification of actins in foraminifera: phylogenetic perspective: European Journal of Protistology, v. 31, p. 191-166.
    • (1995) European Journal of Protistology , vol.31 , pp. 191-1166
    • Fahrni, J.F.1    Pawlowski, J.2
  • 15
    • 18944367900 scopus 로고    scopus 로고
    • Actin suggests Miliammina fusca (Brady) is related to porcellanous rather than to agglutinated foraminifera
    • _, PAWLOWSKI, J., RICHARDSON, S., DEBENAY, J. P., and ZANINETTI, L., 1997, Actin suggests Miliammina fusca (Brady) is related to porcellanous rather than to agglutinated foraminifera: Micropaleontology, v. 42(2), p. 211-214.
    • (1997) Micropaleontology , vol.42 , Issue.2 , pp. 211-214
    • Pawlowski, J.1    Richardson, S.2    Debenay, J.P.3    Zaninetti, L.4
  • 18
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J., 1981, Evolutionary trees from DNA sequences: a maximum likelihood approach: Journal of Molecular Evolution, v. 17, p. 368-376.
    • (1981) Journal of Molecular Evolution , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 19
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • _, 1985, Confidence limits on phylogenies: an approach using the bootstrap: Evolution, v. 39, p. 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
  • 21
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • GUINDON, S., and GASCUEL, O., 2003, A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood: Systematic Biology, v. 52(5), p. 696-704.
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 22
    • 0003894226 scopus 로고
    • Macmillan Publishers, London
    • HAYNES, J. R., 1981, Foraminifera: Macmillan Publishers, London, 433 p.
    • (1981) Foraminifera , pp. 433
    • Haynes, J.R.1
  • 23
    • 0030176881 scopus 로고    scopus 로고
    • Preservation of foraminifera for DNA extraction and PCR amplification
    • HOLZMANN, M., and PAWLOWSKI, J., 1996, Preservation of foraminifera for DNA extraction and PCR amplification: Journal of Foraminiferal Research, v. 26, p. 264-267.
    • (1996) Journal of Foraminiferal Research , vol.26 , pp. 264-267
    • Holzmann, M.1    Pawlowski, J.2
  • 25
    • 0038814774 scopus 로고    scopus 로고
    • Freshwater foraminiferans revealed by analysis of environmental DNA samples
    • _, HABURA, A., GILES, H., BOWSER, S. S., and PAWLOWSKI, J., 2003, Freshwater foraminiferans revealed by analysis of environmental DNA samples: Journal of Eukaryotic Microbiology, v. 50, p. 135-139.
    • (2003) Journal of Eukaryotic Microbiology , vol.50 , pp. 135-139
    • Habura, A.1    Giles, H.2    Bowser, S.S.3    Pawlowski, J.4
  • 26
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
    • KEELING, P. J., 2001, Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home?: Molecular Biology and Evolution, v. 18, p. 1551-1557.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 29
    • 0024937133 scopus 로고
    • Implication of wall composition and structure in agglutinated foraminifers
    • _, and TAPPAN, H., 1989, Implication of wall composition and structure in agglutinated foraminifers: Journal of Paleontology, v. 63, p. 769-777.
    • (1989) Journal of Paleontology , vol.63 , pp. 769-777
    • Tappan, H.1
  • 31
    • 9744238179 scopus 로고    scopus 로고
    • Multigene evidence for close evolutionary relations between Gromia and Foraminifera
    • in press
    • _, BURKI, F., FLAKOWSKI J., BERNEY, C., POLET, S., FAHRNI, J., and PAWLQWSKI, J., Multigene evidence for close evolutionary relations between Gromia and Foraminifera: Acta Protozoologica, 43:303-311, in press.
    • Acta Protozoologica , vol.43 , pp. 303-311
    • Burki, F.1    Flakowski, J.2    Berney, C.3    Polet, S.4    Fahrni, J.5    Pawlqwski, J.6
  • 34
    • 0028046865 scopus 로고
    • Phylogenetic position of the Foraminifera inferred from LSU rRNA gene sequences
    • PAWLOWSKI, J., BOLIVAR, I., GUIARD-MAFFIA, J., and GOUY, M., 1994, Phylogenetic position of the Foraminifera inferred from LSU rRNA gene sequences: Molecular Biology and Evolution, v. 11, p. 929-938.
    • (1994) Molecular Biology and Evolution , vol.11 , pp. 929-938
    • Pawlowski, J.1    Bolivar, I.2    Guiard-Maffia, J.3    Gouy, M.4
  • 35
    • 0030043451 scopus 로고    scopus 로고
    • Early origin of Foraminifera suggested by SSU rRNA gene sequences
    • _, _, I., FAHRNI, J. F., CAVALIER-SMITH, T., and GOUY, M., 1996, Early origin of Foraminifera suggested by SSU rRNA gene sequences: Molecular Biology and Evolution, v. 13, p. 445-450.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 445-450
    • Fahrni, J.F.1    Cavalier-Smith, T.2    Gouy, M.3
  • 36
    • 0030918430 scopus 로고    scopus 로고
    • Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record
    • _, _, FAHRNI, J. F., DE VARGAS, C., GOUY, M., and ZANINETTI, L., 1997, Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record: Molecular Biology and Evolution, v. 14, p. 498-505.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 498-505
    • Fahrni, J.F.1    De Vargas, C.2    Gouy, M.3    Zaninetti, L.4
  • 37
    • 0033230185 scopus 로고    scopus 로고
    • Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer
    • _, _, _, _, and BOWSER, S. S., 1999, Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer: Journal of Eukaryotic Microbiology, v. 46, p. 612-617.
    • (1999) Journal of Eukaryotic Microbiology , vol.46 , pp. 612-617
    • Bowser, S.S.1
  • 38
    • 0033838057 scopus 로고    scopus 로고
    • Introduction to molecular systematics of foraminifera
    • _, 2000, Introduction to molecular systematics of foraminifera: Micropaleontology, v. 46 (suppl. 1), p. 1-12.
    • (2000) Micropaleontology , vol.46 , Issue.SUPPL. 1 , pp. 1-12
  • 39
    • 0036234521 scopus 로고    scopus 로고
    • Molecular phylogeny of Foraminifera - A review
    • _, and HOLZMANN, M., 2002, Molecular phylogeny of Foraminifera - a review: European Journal of Protistology, y. 38, p. 1-10.
    • (2002) European Journal of Protistology , vol.38 , pp. 1-10
    • Holzmann, M.1
  • 40
    • 0036821888 scopus 로고    scopus 로고
    • Phylogeny of allogromiid Foraminifera inferred from SSU rRNA gene sequences
    • _, _, BERNEY, C., FAHRNI, J., CEDHAGEN, T., and BOWSER, S.S., 2002, Phylogeny of allogromiid Foraminifera inferred from SSU rRNA gene sequences: Journal of Foraminiferal Research, v. 32, p. 334-343.
    • (2002) Journal of Foraminiferal Research , vol.32 , pp. 334-343
    • Berney, C.1    Fahrni, J.2    Cedhagen, T.3    Bowser, S.S.4
  • 42
    • 0002214837 scopus 로고    scopus 로고
    • The molecular phylogeny of eukaryota: Solid facts and uncertainties
    • Coombs, G. H., Vickerman, K., Sleigh, M. A., and Warren, A. (eds.), Chapman and Hall, London
    • PHILIPPE, H., and ADOUTTE, A., 1998, The molecular phylogeny of eukaryota: solid facts and uncertainties, in Coombs, G. H., Vickerman, K., Sleigh, M. A., and Warren, A. (eds.), Evolutionary relationships among protozoa: Chapman and Hall, London, p. 25-56.
    • (1998) Evolutionary Relationships among Protozoa , pp. 25-56
    • Philippe, H.1    Adoutte, A.2
  • 43
    • 0034503382 scopus 로고    scopus 로고
    • Long branch attraction and protist phylogeny
    • _, 2000, Long branch attraction and protist phylogeny: Protist, v. 151, p. 307-316.
    • (2000) Protist , vol.151 , pp. 307-316
  • 44
    • 0025736689 scopus 로고
    • Paleozoic Foraminifera
    • Ross, C., and Ross, J., 1991, Paleozoic Foraminifera; BioSystems, v. 25, p. 39-51.
    • (1991) BioSystems , vol.25 , pp. 39-51
    • Ross, C.1    Ross, J.2
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and NEI, M., 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees: Molecular Biology and Evolution, v. 4, p. 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 46
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • STECHMANN, A., and CAVALIER-SMITH, T., 2002, Rooting the eukaryote tree by using a derived gene fusion: Science, v. 297, p. 89-91.
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., HIGGENS, D. G., and GIBSON, T. J., 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice: Nucleic Acids Research, v. 22, p. 4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgens, D.G.2    Gibson, T.J.3
  • 49
    • 0030442692 scopus 로고    scopus 로고
    • Early evolutionary origin of the planktic foraminifera inferred from small subunit rDNA sequence comparisons
    • WADE, C. M., DARLING K. F., KROON, D., and LEIGHBROWN, A. J., 1996, Early evolutionary origin of the planktic foraminifera inferred from small subunit rDNA sequence comparisons: Journal of Molecular Evolution, v. 43, p. 672-677.
    • (1996) Journal of Molecular Evolution , vol.43 , pp. 672-677
    • Wade, C.M.1    Darling, K.F.2    Kroon, D.3    Leighbrown, A.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.