-
1
-
-
0033880672
-
A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific ocean using structural and molecular approaches
-
Atkins MS, Teske AP, Anderson OR (2000) A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific ocean using structural and molecular approaches. J Eukaryot Microbiol 47:400-411
-
(2000)
J Eukaryot Microbiol
, vol.47
, pp. 400-411
-
-
Atkins, M.S.1
Teske, A.P.2
Anderson, O.R.3
-
2
-
-
0034602344
-
A kingdom level phylogeny of Eukaryotes based on combined protein data
-
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF (2000) A kingdom level phylogeny of Eukaryotes based on combined protein data. Science 290:972-977
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
3
-
-
0029105272
-
Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta
-
Bhattacharya D, Helmchen T, Melkonian M (1995) Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta. J Eukaryot Microbiol 42:65-69
-
(1995)
J Eukaryot Microbiol
, vol.42
, pp. 65-69
-
-
Bhattacharya, D.1
Helmchen, T.2
Melkonian, M.3
-
4
-
-
0035207791
-
SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited
-
Bolivar I, Fahrni JF, Smirnov A, Pawlowski J (2001) SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited. Mol Biol Evol 18:2306-2314
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2306-2314
-
-
Bolivar, I.1
Fahrni, J.F.2
Smirnov, A.3
Pawlowski, J.4
-
5
-
-
0035339336
-
A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida
-
Bulman SR, Kühn SF, Marshall JW, Schnepf E (2001) A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida. Protist 152:43-51
-
(2001)
Protist
, vol.152
, pp. 43-51
-
-
Bulman, S.R.1
Kühn, S.F.2
Marshall, J.W.3
Schnepf, E.4
-
6
-
-
0036746494
-
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA
-
Burki F, Berney C, Pawlowski J (2002) Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist 153:251-260
-
(2002)
Protist
, vol.153
, pp. 251-260
-
-
Burki, F.1
Berney, C.2
Pawlowski, J.3
-
7
-
-
0031663016
-
A revised six-kingdom system of life
-
Cavalier-Smith T (1998) A revised six-kingdom system of life. Biol Rev Cambr Philos Soc 73:203-266
-
(1998)
Biol Rev Cambr Philos Soc
, vol.73
, pp. 203-266
-
-
Cavalier-Smith, T.1
-
8
-
-
0030853333
-
Sarcomonad ribosomal RNA sequences, rhizopod phytogeny, and the origin of euglyphid amoebae
-
Cavalier-Smith T, Chao EE (1997) Sarcomonad ribosomal RNA sequences, rhizopod phytogeny, and the origin of euglyphid amoebae. Arch Protistenkd 147:227-236
-
(1997)
Arch Protistenkd
, vol.147
, pp. 227-236
-
-
Cavalier-Smith, T.1
Chao, E.E.2
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
13
-
-
0022376704
-
Dating the human-ape split by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
14
-
-
0033582323
-
Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins
-
Hirt RP, Logsdon Jr JM, Healy B, Dorey MW, Doolittle WF, Embley TM (1999) Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins. Proc Natl Acad Sci USA 96:580-585
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 580-585
-
-
Hirt, R.P.1
Logsdon Jr., J.M.2
Healy, B.3
Dorey, M.W.4
Doolittle, W.F.5
Embley, T.M.6
-
15
-
-
0034903594
-
Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
-
Keeling PJ (2001) Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol Biol Evol 18:1551-1557
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1551-1557
-
-
Keeling, P.J.1
-
16
-
-
0029908930
-
Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
-
Keeling PJ, Doolittle WF (1996) Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol Biol Evol 13:1297-1305
-
(1996)
Mol Biol Evol
, vol.13
, pp. 1297-1305
-
-
Keeling, P.J.1
Doolittle, W.F.2
-
17
-
-
0032170372
-
The phylogenetic position of alpha- and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa)
-
Keeling PJ, Deane JA, McFadden GI (1998) The phylogenetic position of alpha-and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa). J Eukaryot Microbiol 45:561-570
-
(1998)
J Eukaryot Microbiol
, vol.45
, pp. 561-570
-
-
Keeling, P.J.1
Deane, J.A.2
McFadden, G.I.3
-
18
-
-
0032819620
-
The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes
-
Keeling PJ, Deane JA, Hink-Schauer C, Douglas SE, Maier UG, McFadden GI (1999) The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes. Mol Biol Evol 16:1308-1313
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1308-1313
-
-
Keeling, P.J.1
Deane, J.A.2
Hink-Schauer, C.3
Douglas, S.E.4
Maier, U.G.5
McFadden, G.I.6
-
19
-
-
0033977617
-
Evidence from beta-tubulin phylogeny that Microsporidia evolved from within the Fungi
-
Keeling PJ, Luker MA, Palmer JD (2000) Evidence from beta-tubulin phylogeny that Microsporidia evolved from within the Fungi. Mol Biol Evol 17:23-31
-
(2000)
Mol Biol Evol
, vol.17
, pp. 23-31
-
-
Keeling, P.J.1
Luker, M.A.2
Palmer, J.D.3
-
20
-
-
0026613365
-
The early evolution of Eukaryotes: A geological perspective
-
Knoll AH (1992) The early evolution of Eukaryotes: a geological perspective. Science 256:622-627
-
(1992)
Science
, vol.256
, pp. 622-627
-
-
Knoll, A.H.1
-
21
-
-
0034496826
-
Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA
-
Kühn S, Lange M, Medlin LK (2000) Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA. Protist 151:337-345
-
(2000)
Protist
, vol.151
, pp. 337-345
-
-
Kühn, S.1
Lange, M.2
Medlin, L.K.3
-
22
-
-
0027283509
-
The ribosomal database project
-
Larsen N, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke TJ, Marsh TL, Woese CR (1993) The ribosomal database project. Nucleic Acids Res 21:3021-3023
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3021-3023
-
-
Larsen, N.1
Olsen, G.J.2
Maidak, B.L.3
McCaughey, M.J.4
Overbeek, R.5
Macke, T.J.6
Marsh, T.L.7
Woese, C.R.8
-
23
-
-
0012383920
-
Phylum Granuloreticulosa
-
Lee JJ, Leedale GF, Bradbury P (eds) Allen Press, Lawrence, KS
-
Lee JJ, Pawlowski J, Debenay JP, Whittaker J, Banner F, Gooday AJ, Tendal O, Haynes J, Faber WW (2000) Phylum Granuloreticulosa. In: Lee JJ, Leedale GF, Bradbury P (eds) The illustrated guide to the Protozoa, 2nd ed. Allen Press, Lawrence, KS, pp 872-951
-
(2000)
The Illustrated Guide to the Protozoa, 2nd Ed.
, pp. 872-951
-
-
Lee, J.J.1
Pawlowski, J.2
Debenay, J.P.3
Whittaker, J.4
Banner, F.5
Gooday, A.J.6
Tendal, O.7
Haynes, J.8
Faber, W.W.9
-
24
-
-
0036134770
-
Toward the monophyly of Haeckel's Radiolaria: 18S rRNA environmental data support the sisterhood of Polycystinea and Acantharea
-
López-Garcia P, Rodriquez-Valera F, Moreira D (2002) Toward the monophyly of Haeckel's Radiolaria: 18S rRNA environmental data support the sisterhood of Polycystinea and Acantharea. Mol Biol Evol 19:118-121
-
(2002)
Mol Biol Evol
, vol.19
, pp. 118-121
-
-
López-Garcia, P.1
Rodriquez-Valera, F.2
Moreira, D.3
-
25
-
-
0036147362
-
The molecular ecology of microbial Eukaryotes unveils a hidden world
-
Moreira D, López-Garcia P (2002) The molecular ecology of microbial Eukaryotes unveils a hidden world. Trends Microbiol 10:31-38
-
(2002)
Trends Microbiol
, vol.10
, pp. 31-38
-
-
Moreira, D.1
López-Garcia, P.2
-
26
-
-
0034604170
-
The origin of red algae: Implications for the evolution of chloroplasts
-
Moreira D, Le Guyader H, Philippe H (2000) The origin of red algae: Implications for the evolution of chloroplasts. Nature 405:69-72
-
(2000)
Nature
, vol.405
, pp. 69-72
-
-
Moreira, D.1
Le Guyader, H.2
Philippe, H.3
-
27
-
-
0034103919
-
Long branch attraction effects and the status of "basal Eukaryotes": Phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living Diplomonad Trepomonas agilis
-
Morin L (2000) Long branch attraction effects and the status of "basal Eukaryotes": Phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living Diplomonad Trepomonas agilis. J Eukaryot Microbiol 47:167-177
-
(2000)
J Eukaryot Microbiol
, vol.47
, pp. 167-177
-
-
Morin, L.1
-
28
-
-
0027161934
-
Compilation of small subunit RNA structures
-
Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R (1993) Compilation of small subunit RNA structures. Nucleic Acids Res 21:3025-3049
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3025-3049
-
-
Neefs, J.M.1
Van De Peer, Y.2
De Rijk, P.3
Chapelle, S.4
De Wachter, R.5
-
29
-
-
0028046865
-
Phylogenetic position of Foraminifera inferred from LSU rDNA gene sequences
-
Pawlowski J, Bolivar I, Guiard-Maffia J, Gouy M (1994) Phylogenetic position of Foraminifera inferred from LSU rDNA gene sequences. Mol Biol Evol 11:929-938
-
(1994)
Mol Biol Evol
, vol.11
, pp. 929-938
-
-
Pawlowski, J.1
Bolivar, I.2
Guiard-Maffia, J.3
Gouy, M.4
-
30
-
-
0030043451
-
Early origin of Foraminifera suggested by SSU rDNA gene sequences
-
Pawlowski J, Bolivar I, Fahrni JF, Cavalier-Smith T, Gouy M (1996) Early origin of Foraminifera suggested by SSU rDNA gene sequences. Mol Biol Evol 13:445-450
-
(1996)
Mol Biol Evol
, vol.13
, pp. 445-450
-
-
Pawlowski, J.1
Bolivar, I.2
Fahrni, J.F.3
Cavalier-Smith, T.4
Gouy, M.5
-
32
-
-
0002214837
-
The molecular phylogeny of Eukaryota: Solid facts and uncertainties
-
Coombs G, Vickermann K, Sleigh M, Warren A (eds) Chapman & Hall, London
-
Philippe H, Adoutte A (1998) The molecular phylogeny of Eukaryota: Solid facts and uncertainties. In: Coombs G, Vickermann K, Sleigh M, Warren A (eds) Evolutionary relationships among Protozoa. Chapman & Hall, London, pp 25-56
-
(1998)
Evolutionary Relationships among Protozoa
, pp. 25-56
-
-
Philippe, H.1
Adoutte, A.2
-
33
-
-
0034019771
-
Phylogeny of Eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
-
Philippe H, Germot A (2000) Phylogeny of Eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution. Mol Biol Evol 17:830-834
-
(2000)
Mol Biol Evol
, vol.17
, pp. 830-834
-
-
Philippe, H.1
Germot, A.2
-
34
-
-
0034702256
-
Early branching or fast evolving Eukaryotes? An answer based on slowly evolving positions
-
Philippe H, Lopez P, Brinkmann H, Budin K, Germot A, Laurent J, Moreira D, Müller M, Le Guyader H (2000) Early branching or fast evolving Eukaryotes? An answer based on slowly evolving positions. Proc R Soc Lond Ser B 267:1213-1222
-
(2000)
Proc R Soc Lond Ser B
, vol.267
, pp. 1213-1222
-
-
Philippe, H.1
Lopez, P.2
Brinkmann, H.3
Budin, K.4
Germot, A.5
Laurent, J.6
Moreira, D.7
Müller, M.8
Le Guyader, H.9
-
35
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
36
-
-
0034129663
-
RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
-
Robinson-Rechavi M, Huchon D (2000) RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-297
-
(2000)
Bioinformatics
, vol.16
, pp. 296-297
-
-
Robinson-Rechavi, M.1
Huchon, D.2
-
37
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
38
-
-
0026282909
-
Early evolution and the origin of Eukaryotes
-
Sogin ML (1991) Early evolution and the origin of Eukaryotes. Curr Opin Genet Dev 1:457-463
-
(1991)
Curr Opin Genet Dev
, vol.1
, pp. 457-463
-
-
Sogin, M.L.1
-
39
-
-
0031459312
-
History assignment: When was the mitochondrion founded?
-
Sogin ML (1997) History assignment: when was the mitochondrion founded? Curr Opin Genet Dev 7:792-799
-
(1997)
Curr Opin Genet Dev
, vol.7
, pp. 792-799
-
-
Sogin, M.L.1
-
40
-
-
0029814451
-
Higher ribosomal RNA substitution rates in Bacillariophyta and Dasycladales than in Mollusca, Echinodermata and Actinistia-Tetrapoda
-
Sorhannus U (1996) Higher ribosomal RNA substitution rates in Bacillariophyta and Dasycladales than in Mollusca, Echinodermata and Actinistia-Tetrapoda. Mol Biol Evol 13:1032-1038
-
(1996)
Mol Biol Evol
, vol.13
, pp. 1032-1038
-
-
Sorhannus, U.1
-
41
-
-
0037025197
-
Rooting the Eukaryote tree by using a derived gene fusion
-
Stechmann A, Cavalier-Smith T (2002) Rooting the Eukaryote tree by using a derived gene fusion. Science 297:89-91
-
(2002)
Science
, vol.297
, pp. 89-91
-
-
Stechmann, A.1
Cavalier-Smith, T.2
-
42
-
-
0032871269
-
Long-branch attraction and the rDNA model of early eukaryotic evolution
-
Stiller JW, Hall BD (1999) Long-branch attraction and the rDNA model of early eukaryotic evolution. Mol Biol Evol 16:1270-1279
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1270-1279
-
-
Stiller, J.W.1
Hall, B.D.2
-
44
-
-
0001336205
-
Phylogenetic Inference
-
Hillis DM, Moritz C, Mable BK (eds) Sinauer, Sunderland, MA
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic Inference. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics. Sinauer, Sunderland, MA, pp 407-514
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
45
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
-
(1993)
Mol Biol Evol
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
46
-
-
0031436828
-
Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
-
Van de Peer Y, De Wachter R (1997) Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J Mol Evol 45:619-630
-
(1997)
J Mol Evol
, vol.45
, pp. 619-630
-
-
Van De Peer, Y.1
De Wachter, R.2
-
47
-
-
0034538854
-
An updated and comprehensive rDNA phylogeny of (crown) Eukaryotes based on rate-calibrated evolutionary distances
-
Van de Peer Y, Baldauf SL, Doolittle WF, Meyer A (2000a) An updated and comprehensive rDNA phylogeny of (crown) Eukaryotes based on rate-calibrated evolutionary distances. J Mol Evol 51:565-576
-
(2000)
J Mol Evol
, vol.51
, pp. 565-576
-
-
Van De Peer, Y.1
Baldauf, S.L.2
Doolittle, W.F.3
Meyer, A.4
-
48
-
-
0034603818
-
Microsporidia: Accumulating evidence that a group of amitochondriate and suspectedly primitive Eukaryotes are just curious Fungi
-
Van de Peer Y, Ben Ali A, Meyer A (2000b) Microsporidia: Accumulating evidence that a group of amitochondriate and suspectedly primitive Eukaryotes are just curious Fungi. Gene 246:1-8
-
(2000)
Gene
, vol.246
, pp. 1-8
-
-
Van De Peer, Y.1
Ben Ali, A.2
Meyer, A.3
-
49
-
-
0036010835
-
The soil flagellate Proleptomonas faecicola: Cell organisation and phylogeny suggest that the only described free-living Trypanosomatid is not a Kinetoplastid but has Cercomonad affinities
-
Vickerman K, Le Ray D, Hoef-Emden K, De Jonckheere J (2002) The soil flagellate Proleptomonas faecicola: Cell organisation and phylogeny suggest that the only described free-living Trypanosomatid is not a Kinetoplastid but has Cercomonad affinities. Protist 153:9-24
-
(2002)
Protist
, vol.153
, pp. 9-24
-
-
Vickerman, K.1
Le Ray, D.2
Hoef-Emden, K.3
De Jonckheere, J.4
-
50
-
-
84989446394
-
Nucleic acid sequence phylogeny and random outgroups
-
Wheeler WC (1990) Nucleic acid sequence phylogeny and random outgroups. Cladistics 6:363-367
-
(1990)
Cladistics
, vol.6
, pp. 363-367
-
-
Wheeler, W.C.1
-
51
-
-
0034554835
-
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
-
Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28:4698-4708
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4698-4708
-
-
Wuyts, J.1
De Rijk, P.2
Van De Peer, Y.3
Pison, G.4
Rousseeuw, P.5
De Wachter, R.6
|