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Volumn 57, Issue SUPPL. 1, 2003, Pages

Revised Small Subunit rRNA Analysis Provides Further Evidence that Foraminifera Are Related to Cercozoa

Author keywords

Cercozoa; Eukaryotes; Foraminifera; Gromia oviformis; Long branch attraction; Molecular phylogeny; Small subunit ribosomal DNA

Indexed keywords

ACTIN; RIBOSOME DNA; RIBOSOME RNA;

EID: 0348011481     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-003-0015-2     Document Type: Conference Paper
Times cited : (40)

References (51)
  • 1
    • 0033880672 scopus 로고    scopus 로고
    • A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific ocean using structural and molecular approaches
    • Atkins MS, Teske AP, Anderson OR (2000) A survey of flagellate diversity at four deep-sea hydrothermal vents in the eastern Pacific ocean using structural and molecular approaches. J Eukaryot Microbiol 47:400-411
    • (2000) J Eukaryot Microbiol , vol.47 , pp. 400-411
    • Atkins, M.S.1    Teske, A.P.2    Anderson, O.R.3
  • 2
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom level phylogeny of Eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF (2000) A kingdom level phylogeny of Eukaryotes based on combined protein data. Science 290:972-977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 3
    • 0029105272 scopus 로고
    • Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta
    • Bhattacharya D, Helmchen T, Melkonian M (1995) Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta. J Eukaryot Microbiol 42:65-69
    • (1995) J Eukaryot Microbiol , vol.42 , pp. 65-69
    • Bhattacharya, D.1    Helmchen, T.2    Melkonian, M.3
  • 4
    • 0035207791 scopus 로고    scopus 로고
    • SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited
    • Bolivar I, Fahrni JF, Smirnov A, Pawlowski J (2001) SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): The origin of Gymnamoebae revisited. Mol Biol Evol 18:2306-2314
    • (2001) Mol Biol Evol , vol.18 , pp. 2306-2314
    • Bolivar, I.1    Fahrni, J.F.2    Smirnov, A.3    Pawlowski, J.4
  • 5
    • 0035339336 scopus 로고    scopus 로고
    • A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida
    • Bulman SR, Kühn SF, Marshall JW, Schnepf E (2001) A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida. Protist 152:43-51
    • (2001) Protist , vol.152 , pp. 43-51
    • Bulman, S.R.1    Kühn, S.F.2    Marshall, J.W.3    Schnepf, E.4
  • 6
    • 0036746494 scopus 로고    scopus 로고
    • Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA
    • Burki F, Berney C, Pawlowski J (2002) Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist 153:251-260
    • (2002) Protist , vol.153 , pp. 251-260
    • Burki, F.1    Berney, C.2    Pawlowski, J.3
  • 7
    • 0031663016 scopus 로고    scopus 로고
    • A revised six-kingdom system of life
    • Cavalier-Smith T (1998) A revised six-kingdom system of life. Biol Rev Cambr Philos Soc 73:203-266
    • (1998) Biol Rev Cambr Philos Soc , vol.73 , pp. 203-266
    • Cavalier-Smith, T.1
  • 8
    • 0030853333 scopus 로고    scopus 로고
    • Sarcomonad ribosomal RNA sequences, rhizopod phytogeny, and the origin of euglyphid amoebae
    • Cavalier-Smith T, Chao EE (1997) Sarcomonad ribosomal RNA sequences, rhizopod phytogeny, and the origin of euglyphid amoebae. Arch Protistenkd 147:227-236
    • (1997) Arch Protistenkd , vol.147 , pp. 227-236
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 10
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 13
    • 0022376704 scopus 로고
    • Dating the human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 15
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
    • Keeling PJ (2001) Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol Biol Evol 18:1551-1557
    • (2001) Mol Biol Evol , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 16
    • 0029908930 scopus 로고    scopus 로고
    • Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
    • Keeling PJ, Doolittle WF (1996) Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol Biol Evol 13:1297-1305
    • (1996) Mol Biol Evol , vol.13 , pp. 1297-1305
    • Keeling, P.J.1    Doolittle, W.F.2
  • 17
    • 0032170372 scopus 로고    scopus 로고
    • The phylogenetic position of alpha- and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa)
    • Keeling PJ, Deane JA, McFadden GI (1998) The phylogenetic position of alpha-and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa). J Eukaryot Microbiol 45:561-570
    • (1998) J Eukaryot Microbiol , vol.45 , pp. 561-570
    • Keeling, P.J.1    Deane, J.A.2    McFadden, G.I.3
  • 18
    • 0032819620 scopus 로고    scopus 로고
    • The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes
    • Keeling PJ, Deane JA, Hink-Schauer C, Douglas SE, Maier UG, McFadden GI (1999) The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes. Mol Biol Evol 16:1308-1313
    • (1999) Mol Biol Evol , vol.16 , pp. 1308-1313
    • Keeling, P.J.1    Deane, J.A.2    Hink-Schauer, C.3    Douglas, S.E.4    Maier, U.G.5    McFadden, G.I.6
  • 19
    • 0033977617 scopus 로고    scopus 로고
    • Evidence from beta-tubulin phylogeny that Microsporidia evolved from within the Fungi
    • Keeling PJ, Luker MA, Palmer JD (2000) Evidence from beta-tubulin phylogeny that Microsporidia evolved from within the Fungi. Mol Biol Evol 17:23-31
    • (2000) Mol Biol Evol , vol.17 , pp. 23-31
    • Keeling, P.J.1    Luker, M.A.2    Palmer, J.D.3
  • 20
    • 0026613365 scopus 로고
    • The early evolution of Eukaryotes: A geological perspective
    • Knoll AH (1992) The early evolution of Eukaryotes: a geological perspective. Science 256:622-627
    • (1992) Science , vol.256 , pp. 622-627
    • Knoll, A.H.1
  • 21
    • 0034496826 scopus 로고    scopus 로고
    • Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA
    • Kühn S, Lange M, Medlin LK (2000) Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA. Protist 151:337-345
    • (2000) Protist , vol.151 , pp. 337-345
    • Kühn, S.1    Lange, M.2    Medlin, L.K.3
  • 24
    • 0036134770 scopus 로고    scopus 로고
    • Toward the monophyly of Haeckel's Radiolaria: 18S rRNA environmental data support the sisterhood of Polycystinea and Acantharea
    • López-Garcia P, Rodriquez-Valera F, Moreira D (2002) Toward the monophyly of Haeckel's Radiolaria: 18S rRNA environmental data support the sisterhood of Polycystinea and Acantharea. Mol Biol Evol 19:118-121
    • (2002) Mol Biol Evol , vol.19 , pp. 118-121
    • López-Garcia, P.1    Rodriquez-Valera, F.2    Moreira, D.3
  • 25
    • 0036147362 scopus 로고    scopus 로고
    • The molecular ecology of microbial Eukaryotes unveils a hidden world
    • Moreira D, López-Garcia P (2002) The molecular ecology of microbial Eukaryotes unveils a hidden world. Trends Microbiol 10:31-38
    • (2002) Trends Microbiol , vol.10 , pp. 31-38
    • Moreira, D.1    López-Garcia, P.2
  • 26
    • 0034604170 scopus 로고    scopus 로고
    • The origin of red algae: Implications for the evolution of chloroplasts
    • Moreira D, Le Guyader H, Philippe H (2000) The origin of red algae: Implications for the evolution of chloroplasts. Nature 405:69-72
    • (2000) Nature , vol.405 , pp. 69-72
    • Moreira, D.1    Le Guyader, H.2    Philippe, H.3
  • 27
    • 0034103919 scopus 로고    scopus 로고
    • Long branch attraction effects and the status of "basal Eukaryotes": Phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living Diplomonad Trepomonas agilis
    • Morin L (2000) Long branch attraction effects and the status of "basal Eukaryotes": Phylogeny and structural analysis of the ribosomal RNA gene cluster of the free-living Diplomonad Trepomonas agilis. J Eukaryot Microbiol 47:167-177
    • (2000) J Eukaryot Microbiol , vol.47 , pp. 167-177
    • Morin, L.1
  • 29
    • 0028046865 scopus 로고
    • Phylogenetic position of Foraminifera inferred from LSU rDNA gene sequences
    • Pawlowski J, Bolivar I, Guiard-Maffia J, Gouy M (1994) Phylogenetic position of Foraminifera inferred from LSU rDNA gene sequences. Mol Biol Evol 11:929-938
    • (1994) Mol Biol Evol , vol.11 , pp. 929-938
    • Pawlowski, J.1    Bolivar, I.2    Guiard-Maffia, J.3    Gouy, M.4
  • 31
    • 0033230185 scopus 로고    scopus 로고
    • Molecular evidence that Reticulomyxa filosa is a freshwater naked Foraminifera
    • Pawlowski J, Bolivar I, Fahrni JF, De Vargas C (1999) Molecular evidence that Reticulomyxa filosa is a freshwater naked Foraminifera. J Eukaryot Microbiol 46:612-617
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 612-617
    • Pawlowski, J.1    Bolivar, I.2    Fahrni, J.F.3    De Vargas, C.4
  • 32
    • 0002214837 scopus 로고    scopus 로고
    • The molecular phylogeny of Eukaryota: Solid facts and uncertainties
    • Coombs G, Vickermann K, Sleigh M, Warren A (eds) Chapman & Hall, London
    • Philippe H, Adoutte A (1998) The molecular phylogeny of Eukaryota: Solid facts and uncertainties. In: Coombs G, Vickermann K, Sleigh M, Warren A (eds) Evolutionary relationships among Protozoa. Chapman & Hall, London, pp 25-56
    • (1998) Evolutionary Relationships among Protozoa , pp. 25-56
    • Philippe, H.1    Adoutte, A.2
  • 33
    • 0034019771 scopus 로고    scopus 로고
    • Phylogeny of Eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
    • Philippe H, Germot A (2000) Phylogeny of Eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution. Mol Biol Evol 17:830-834
    • (2000) Mol Biol Evol , vol.17 , pp. 830-834
    • Philippe, H.1    Germot, A.2
  • 35
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 36
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi M, Huchon D (2000) RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-297
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 37
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 38
    • 0026282909 scopus 로고
    • Early evolution and the origin of Eukaryotes
    • Sogin ML (1991) Early evolution and the origin of Eukaryotes. Curr Opin Genet Dev 1:457-463
    • (1991) Curr Opin Genet Dev , vol.1 , pp. 457-463
    • Sogin, M.L.1
  • 39
    • 0031459312 scopus 로고    scopus 로고
    • History assignment: When was the mitochondrion founded?
    • Sogin ML (1997) History assignment: when was the mitochondrion founded? Curr Opin Genet Dev 7:792-799
    • (1997) Curr Opin Genet Dev , vol.7 , pp. 792-799
    • Sogin, M.L.1
  • 40
    • 0029814451 scopus 로고    scopus 로고
    • Higher ribosomal RNA substitution rates in Bacillariophyta and Dasycladales than in Mollusca, Echinodermata and Actinistia-Tetrapoda
    • Sorhannus U (1996) Higher ribosomal RNA substitution rates in Bacillariophyta and Dasycladales than in Mollusca, Echinodermata and Actinistia-Tetrapoda. Mol Biol Evol 13:1032-1038
    • (1996) Mol Biol Evol , vol.13 , pp. 1032-1038
    • Sorhannus, U.1
  • 41
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the Eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T (2002) Rooting the Eukaryote tree by using a derived gene fusion. Science 297:89-91
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 42
    • 0032871269 scopus 로고    scopus 로고
    • Long-branch attraction and the rDNA model of early eukaryotic evolution
    • Stiller JW, Hall BD (1999) Long-branch attraction and the rDNA model of early eukaryotic evolution. Mol Biol Evol 16:1270-1279
    • (1999) Mol Biol Evol , vol.16 , pp. 1270-1279
    • Stiller, J.W.1    Hall, B.D.2
  • 44
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic Inference
    • Hillis DM, Moritz C, Mable BK (eds) Sinauer, Sunderland, MA
    • Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic Inference. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics. Sinauer, Sunderland, MA, pp 407-514
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 45
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 46
    • 0031436828 scopus 로고    scopus 로고
    • Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
    • Van de Peer Y, De Wachter R (1997) Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J Mol Evol 45:619-630
    • (1997) J Mol Evol , vol.45 , pp. 619-630
    • Van De Peer, Y.1    De Wachter, R.2
  • 47
    • 0034538854 scopus 로고    scopus 로고
    • An updated and comprehensive rDNA phylogeny of (crown) Eukaryotes based on rate-calibrated evolutionary distances
    • Van de Peer Y, Baldauf SL, Doolittle WF, Meyer A (2000a) An updated and comprehensive rDNA phylogeny of (crown) Eukaryotes based on rate-calibrated evolutionary distances. J Mol Evol 51:565-576
    • (2000) J Mol Evol , vol.51 , pp. 565-576
    • Van De Peer, Y.1    Baldauf, S.L.2    Doolittle, W.F.3    Meyer, A.4
  • 48
    • 0034603818 scopus 로고    scopus 로고
    • Microsporidia: Accumulating evidence that a group of amitochondriate and suspectedly primitive Eukaryotes are just curious Fungi
    • Van de Peer Y, Ben Ali A, Meyer A (2000b) Microsporidia: Accumulating evidence that a group of amitochondriate and suspectedly primitive Eukaryotes are just curious Fungi. Gene 246:1-8
    • (2000) Gene , vol.246 , pp. 1-8
    • Van De Peer, Y.1    Ben Ali, A.2    Meyer, A.3
  • 49
    • 0036010835 scopus 로고    scopus 로고
    • The soil flagellate Proleptomonas faecicola: Cell organisation and phylogeny suggest that the only described free-living Trypanosomatid is not a Kinetoplastid but has Cercomonad affinities
    • Vickerman K, Le Ray D, Hoef-Emden K, De Jonckheere J (2002) The soil flagellate Proleptomonas faecicola: Cell organisation and phylogeny suggest that the only described free-living Trypanosomatid is not a Kinetoplastid but has Cercomonad affinities. Protist 153:9-24
    • (2002) Protist , vol.153 , pp. 9-24
    • Vickerman, K.1    Le Ray, D.2    Hoef-Emden, K.3    De Jonckheere, J.4
  • 50
    • 84989446394 scopus 로고
    • Nucleic acid sequence phylogeny and random outgroups
    • Wheeler WC (1990) Nucleic acid sequence phylogeny and random outgroups. Cladistics 6:363-367
    • (1990) Cladistics , vol.6 , pp. 363-367
    • Wheeler, W.C.1
  • 51
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28:4698-4708
    • (2000) Nucleic Acids Res , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, P.2    Van De Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6


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