메뉴 건너뛰기




Volumn 43, Issue 4, 2004, Pages 303-311

Multigene evidence for close evolutionary relations between Gromia and foraminifera

Author keywords

Actin; Cercozoa; Filosea; Foraminifera; Phylogeny; Polyubiquitin; RNA polymerase II largest subunit; SSU rRNA

Indexed keywords

CERCOZOA; FILOSEA; FORAMINIFERA; GROMIA; GROMIA OVIFORMIS; HAPLOSPORIDIA; INSERTION SEQUENCES; PLASMODIOPHORIDA; PROTISTA; PROTOZOA; RHIZOPODA;

EID: 9744238179     PISSN: 00651583     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (33)

References (42)
  • 1
    • 1242321982 scopus 로고    scopus 로고
    • Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens
    • Archibald J. M., Keeling P. J. (2004) Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. J. Eukaryot. Microbiol. 51: 113-118
    • (2004) J. Eukaryot. Microbiol. , vol.51 , pp. 113-118
    • Archibald, J.M.1    Keeling, P.J.2
  • 2
    • 0037229220 scopus 로고    scopus 로고
    • A novel polyubiquitin structure in Cercozoa and Foraminifera: Evidence for a new eukaryotic supergroup
    • Archibald J. M., Longet D., Pawlowski J., Keeling P. J. (2003) A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol. Biol. Evol. 20: 62-66
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 62-66
    • Archibald, J.M.1    Longet, D.2    Pawlowski, J.3    Keeling, P.J.4
  • 3
    • 0013879929 scopus 로고
    • Observation on the sexual generation of Gromia oviformis Dujardin
    • Arnold Z. M. (1966) Observation on the sexual generation of Gromia oviformis Dujardin. J. Protozool. 13: 23-27
    • (1966) J. Protozool. , vol.13 , pp. 23-27
    • Arnold, Z.M.1
  • 4
    • 0009011607 scopus 로고
    • Shell-wall lamination in Gromia oviformis Dujardin
    • Arnold Z. M. (1982) Shell-wall lamination in Gromia oviformis Dujardin. J. Foraminiferal Res. 12: 298-316
    • (1982) J. Foraminiferal Res. , vol.12 , pp. 298-316
    • Arnold, Z.M.1
  • 5
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf S. L., Roger A. J., Wenk-Siefert I., Doolittle W. F. (2000). A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 6
    • 0029105272 scopus 로고
    • Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA indentify an independent Rhizopod lineage containing the Euglyphida and the Chlorarachniophyta
    • Bhattacharya D., Helmchen T., Melkonian M. (1995) Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA indentify an independent Rhizopod lineage containing the Euglyphida and the Chlorarachniophyta. J. Eukaryot. Microbiol. 42: 65-69
    • (1995) J. Eukaryot. Microbiol. , vol.42 , pp. 65-69
    • Bhattacharya, D.1    Helmchen, T.2    Melkonian, M.3
  • 7
    • 0348011481 scopus 로고    scopus 로고
    • Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa
    • Berney C., Pawlowski J. (2003) Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. J. Mol. Evol. 57 (Suppl. 1): 120-127
    • (2003) J. Mol. Evol. , vol.57 , Issue.1 SUPPL. , pp. 120-127
    • Berney, C.1    Pawlowski, J.2
  • 8
    • 0035339336 scopus 로고    scopus 로고
    • A phylogenetic analysis of the SSU rDNA from members of the Plasmodiophorida and Phagomyxea
    • Bulman S. R., Kühn S. F., Marshall J. W., Schnepf E. (2001) A phylogenetic analysis of the SSU rDNA from members of the Plasmodiophorida and Phagomyxea. Protist 152: 43-51
    • (2001) Protist , vol.152 , pp. 43-51
    • Bulman, S.R.1    Kühn, S.F.2    Marshall, J.W.3    Schnepf, E.4
  • 9
    • 0036746494 scopus 로고    scopus 로고
    • Phylogenetic position of Gromia oviformis inferred from nuclear-encoded small subunit ribosomal RNA
    • Burki F., Berney C., Pawlowski J. (2002) Phylogenetic position of Gromia oviformis inferred from nuclear-encoded small subunit ribosomal RNA. Protist 153: 251-260
    • (2002) Protist , vol.153 , pp. 251-260
    • Burki, F.1    Berney, C.2    Pawlowski, J.3
  • 10
    • 0030853333 scopus 로고    scopus 로고
    • Sarcomonad phylogeny and the origin of euglyphid amoebae
    • Cavalier-Smith T., Chao E. E. (1996/7) Sarcomonad phylogeny and the origin of euglyphid amoebae. Arch. Protistenkd. 147: 227-236
    • (1996) Arch. Protistenkd. , vol.147 , pp. 227-236
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 11
    • 0037403365 scopus 로고    scopus 로고
    • Phylogeny of Choanozoa, Apusozoa, and other Protozoa and early eukaryote megaevolution
    • Cavalier-Smith T., Chao E. E. (2003a) Phylogeny of Choanozoa, Apusozoa, and other Protozoa and early eukaryote megaevolution. J. Mol. Evol. 56: 540-563
    • (2003) J. Mol. Evol. , vol.56 , pp. 540-563
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 12
    • 0242456821 scopus 로고    scopus 로고
    • Phylogeny and classification of phylum Cercozoa (Protozoa)
    • Cavalier-Smith T., Chao E. E. (2003b) Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 154: 341-358
    • (2003) Protist , vol.154 , pp. 341-358
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 13
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by guanidinium thiocyanate-phenol- chloroform extraction
    • Chomczynski P., Sacchi N. (1987) Single-step method of RNA isolation by guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156-159
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 15
    • 0002933765 scopus 로고
    • Beitrag zur Kenntnis der Rhizopoden: Morphologische und systematische Untersuchungen und eine Klassifikationsversuch
    • de Saedeleer H. (1934) Beitrag zur Kenntnis der Rhizopoden: morphologische und systematische Untersuchungen und eine Klassifikationsversuch. Mém. Mus. Roy. d'Hist. Nat. Belgique 60: 1-112
    • (1934) Mém. Mus. Roy. d'Hist. Nat. Belgique , vol.60 , pp. 1-112
    • De Saedeleer, H.1
  • 16
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 17
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0000887948 scopus 로고
    • Confusion between Gromia oviformis and Allogromia ovoidea
    • Hedley R. H. (1958) Confusion between Gromia oviformis and Allogromia ovoidea. Nature 182: 1391-1392
    • (1958) Nature , vol.182 , pp. 1391-1392
    • Hedley, R.H.1
  • 20
    • 0009011608 scopus 로고
    • Gromia oviformis (Rhizopodea) from New Zealand with comments on the fossil chitinozoa
    • Hedley R. H. (1962) Gromia oviformis (Rhizopodea) from New Zealand with comments on the fossil chitinozoa. N. Z. J. Sci. 5: 121-136
    • (1962) N. Z. J. Sci. , vol.5 , pp. 121-136
    • Hedley, R.H.1
  • 21
    • 0002880856 scopus 로고
    • Electron-microscopic observations of Gromia oviformis (Sarcodina)
    • Hedley R. H., Bertaud W. S. (1962) Electron-microscopic observations of Gromia oviformis (Sarcodina). J. Protozool. 9: 79-87
    • (1962) J. Protozool. , vol.9 , pp. 79-87
    • Hedley, R.H.1    Bertaud, W.S.2
  • 22
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
    • Keeling P. J. (2001) Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol. Biol. Evol. 18: 1551-1557
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 23
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C., Preparata G., Saccone C., Serio G. (1984) A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20: 86-93
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 26
    • 0344897110 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies
    • Longet D., Archibald J. M., Keeling P. J., Pawlowski J (2003) Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int. J. Syst. Evol. Microbiol. 53: 1735-1739
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1735-1739
    • Longet, D.1    Archibald, J.M.2    Keeling, P.J.3    Pawlowski, J.4
  • 29
    • 0002542575 scopus 로고
    • To the biology of the monothalamous foraminifer Allogromia marina n. sp.
    • Nyholm K.-G., Gertz I. (1973) To the biology of the monothalamous foraminifer Allogromia marina n. sp. Zoon 1: 89-93
    • (1973) Zoon , vol.1 , pp. 89-93
    • Nyholm, K.-G.1    Gertz, I.2
  • 30
    • 0010699208 scopus 로고    scopus 로고
    • Amoebae of uncertain affinities
    • (Eds J. J. Lee, G. F. Leedale, P. Bradbury). 2 ed., Society of Protozoologists, Lawrence, KS
    • Patterson D. J., Simpson A. G. B., Rogerson A. (2000) Amoebae of uncertain affinities. In: An Illustrated Guide to the Protozoa (Eds J. J. Lee, G. F. Leedale, P. Bradbury). 2 ed., Society of Protozoologists, Lawrence, KS, 804-827
    • (2000) An Illustrated Guide to the Protozoa , pp. 804-827
    • Patterson, D.J.1    Simpson, A.G.B.2    Rogerson, A.3
  • 32
    • 9744269825 scopus 로고    scopus 로고
    • Phylum Haplosporidia
    • (Eds J. J. Lee, G. F. Leedale, P. Bradbury), 2 ed., Society of Protozoologists, Lawrence, KS
    • Perkins, F.O. (2000) Phylum Haplosporidia. In: An Illustrated Guide to the Protozoa (Eds J. J. Lee, G. F. Leedale, P. Bradbury), 2 ed., Society of Protozoologists, Lawrence, KS, 1328-1341
    • (2000) An Illustrated Guide to the Protozoa , pp. 1328-1341
    • Perkins, F.O.1
  • 33
    • 0002214837 scopus 로고    scopus 로고
    • The molecular phylogeny of eukaryotes: Solid facts and uncertainties
    • (Eds H. Coombs, K. Vickerman, M. A. Sleigh, A. Warren). Chapman and Hall, London
    • Philippe H., Adoutte A. (1998) The molecular phylogeny of eukaryotes: solid facts and uncertainties. In: Evolutionary Relationships among Protozoa. (Eds H. Coombs, K. Vickerman, M. A. Sleigh, A. Warren). Chapman and Hall, London, 25-56
    • (1998) Evolutionary Relationships among Protozoa , pp. 25-56
    • Philippe, H.1    Adoutte, A.2
  • 34
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D., Crandall K. A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 35
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0345832217 scopus 로고    scopus 로고
    • Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa
    • Simspson A. G., Roger A. J. (2004) Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa. Mol. Phylogenet. Evol. 30: 201-212
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 201-212
    • Simspson, A.G.1    Roger, A.J.2
  • 38
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer K., von Haeseler A. (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13: 964-969
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 40
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-pecific gap penalises and weight matrix choice
    • Thompson J. D., Higgens D. G., Gibson T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-pecific gap penalises and weight matrix choice. Nucleic Acids Res. 22: 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgens, D.G.2    Gibson, T.J.3
  • 41
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • Wuyts J., de Rijk P., van de Peer Y., Pison G., Rousseeuw P., de Wachter R. (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res. 28: 4698-4708
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, P.2    Van De Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6
  • 42
    • 0036012711 scopus 로고    scopus 로고
    • Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (Order Euglyphida)
    • Wylezich C., Meisterfeld R., Meisterfeld S., Schlegel M. (2002) Phylogenetic analyses of small subunit ribosomal RNA coding regions reveal a monophyletic lineage of euglyphid testate amoebae (Order Euglyphida). J. Eukaryot. Microbiol. 49: 108-118
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 108-118
    • Wylezich, C.1    Meisterfeld, R.2    Meisterfeld, S.3    Schlegel, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.