-
1
-
-
0034712743
-
The new animal phylogeny: Reliability and implications
-
USA
-
Adoutte, A., G. Balavoine, N. Lartillot, O. Lespinet, B. Prud'homme, and R. de Rosa. 2000. The new animal phylogeny: reliability and implications. Proc. Natl. Acad. Sci. USA 97:4453-4456.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 4453-4456
-
-
Adoutte, A.1
Balavoine, G.2
Lartillot, N.3
Lespinet, O.4
Prud'Homme, B.5
De Rosa, R.6
-
2
-
-
0034994843
-
The nucleariid amoebae: More protists at the animal-fungal boundary
-
Amaral-Zettler, L. A., T. A. Nerad, C. J. O'Kelly, and M. L. Sogin. 2001. The nucleariid amoebae: more protists at the animal-fungal boundary. J. Eukaryot. Microbiol. 48:293-297.
-
(2001)
J. Eukaryot. Microbiol.
, vol.48
, pp. 293-297
-
-
Amaral-Zettler, L.A.1
Nerad, T.A.2
O'Kelly, C.J.3
Sogin, M.L.4
-
3
-
-
14544283723
-
Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
-
Arisue, N., M. Hasegawa, and T. Hashimoto. 2005. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol. Biol. Evol. 22:409-420.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 409-420
-
-
Arisue, N.1
Hasegawa, M.2
Hashimoto, T.3
-
4
-
-
0033814365
-
Ancyromonadida: A new phylogenetic lineage among the protozoa closely related to the common ancestor of metazoa, fungi and choanoflagellates (Opisthokonta)
-
Atkins, M. S., A. G. McArthur, and A. P. Teske. 2000. Ancyromonadida: a new phylogenetic lineage among the protozoa closely related to the common ancestor of metazoa, fungi and choanoflagellates (Opisthokonta). J. Mol. Evol. 51:278-285.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 278-285
-
-
Atkins, M.S.1
McArthur, A.G.2
Teske, A.P.3
-
5
-
-
0032723027
-
A search for the origins of animals and fungi: Comparing and combining molecular data
-
Baldauf, S. L. 1999. A search for the origins of animals and fungi: comparing and combining molecular data. Am. Nat. 154:S178-S188.
-
(1999)
Am. Nat.
, vol.154
-
-
Baldauf, S.L.1
-
6
-
-
0030667683
-
Origin and evolution of slime molds (Mycetozoa)
-
USA
-
Baldauf, S. L., and W. F. Doolittle. 1997. Origin and evolution of slime molds (Mycetozoa). Proc. Natl. Acad. Sci. USA 94:12007-12012.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 12007-12012
-
-
Baldauf, S.L.1
Doolittle, W.F.2
-
7
-
-
0027138675
-
Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
-
USA
-
Baldauf, S. L., and J. D. Palmer. 1993. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc. Natl. Acad. Sci. USA 90:11558-11562.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 11558-11562
-
-
Baldauf, S.L.1
Palmer, J.D.2
-
8
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf, S. L., A. J. Roger, I. Wenk-Sierfert, and W. F. Doolittle. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Sierfert, I.3
Doolittle, W.F.4
-
9
-
-
0037022379
-
The analysis of 100 genes support the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
-
USA
-
Bapteste, E., H. Brinkmann, J. A. Lee et al. (11 co-authors). 2001. The analysis of 100 genes support the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc. Natl. Acad. Sci. USA 99:1414-1419.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 1414-1419
-
-
Bapteste, E.1
Brinkmann, H.2
Lee, J.A.3
-
10
-
-
0000981639
-
Amoebidium parasiticum is a protozoan, not a Trichomycete
-
Benny, G. L., and K. O'Donnell. 2000. Amoebidium parasiticum is a protozoan, not a Trichomycete. Mycologia 92:1133-1137.
-
(2000)
Mycologia
, vol.92
, pp. 1133-1137
-
-
Benny, G.L.1
O'Donnell, K.2
-
11
-
-
0001225414
-
Fungal molecular evolution: Gene trees and geologic time
-
D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds. Springer Verlag, New York
-
Berbee, M. L., and J. W. Taylor. 2001. Fungal molecular evolution: gene trees and geologic time. Pp. 229-246 in D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds. The Mycota. Springer Verlag, New York.
-
(2001)
The Mycota
, pp. 229-246
-
-
Berbee, M.L.1
Taylor, J.W.2
-
12
-
-
0031843745
-
Phylogenetic analysis of the Hsp70 sequences reveals the monophyly of Metazoa and specific phylogenetic relationships between animals and fungi
-
Borchiellini, C., N. Boury-Esnault, J. Vacelet, and Y. Le Parco. 1998. Phylogenetic analysis of the Hsp70 sequences reveals the monophyly of Metazoa and specific phylogenetic relationships between animals and fungi. Mol. Biol. Evol. 15:647-655.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 647-655
-
-
Borchiellini, C.1
Boury-Esnault, N.2
Vacelet, J.3
Le Parco, Y.4
-
13
-
-
2442725056
-
Phylum Zoomastigina Class Choanomastigotes (Choanoflagellates)
-
L. Margulis, J. O. Corliss, M. Melkonian, and D. J. Chapman, eds. Jones and Bartlett Publishers, Boston
-
Buck, K. R. 1990. Phylum Zoomastigina Class Choanomastigotes (Choanoflagellates). Pp. 194-199 in L. Margulis, J. O. Corliss, M. Melkonian, and D. J. Chapman, eds. Handbook of Protoctista. Jones and Bartlett Publishers, Boston.
-
(1990)
Handbook of Protoctista
, pp. 194-199
-
-
Buck, K.R.1
-
14
-
-
0020326042
-
Bacteriophage Sp6-specific RNA-polymerase. 1. Isolation and characterization of the enzyme
-
Butler, E. T., and M. J. Chamberlin. 1982. Bacteriophage Sp6-specific RNA-polymerase. 1. Isolation and characterization of the enzyme. J. Biol. Chem. 257:5772-5778.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 5772-5778
-
-
Butler, E.T.1
Chamberlin, M.J.2
-
15
-
-
0001875826
-
The origin of fungi and pseudofungi
-
A. D. M. Rayner, C. M. Brasier, and D. Moore, eds. Cambridge University Press Cambridge, UK
-
Cavalier-Smith, T. 1987. The origin of fungi and pseudofungi. Pp. 339-353 in A. D. M. Rayner, C. M. Brasier, and D. Moore, eds. Evolutionary biology of fungi. Cambridge University Press Cambridge, UK.
-
(1987)
Evolutionary Biology of Fungi
, pp. 339-353
-
-
Cavalier-Smith, T.1
-
16
-
-
0027145102
-
Kingdom Protozoa and its 18 phyla
-
_. 1993. Kingdom Protozoa and its 18 phyla. Microbiol. Rev. 57:953-994.
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 953-994
-
-
-
17
-
-
0000422155
-
Neomonada and the origin of animals and fungi
-
G. H. Coombs, K. Vickerman, M. A. Sleigh, and A. Warren, eds. Kluwer
-
_. 1998a. Neomonada and the origin of animals and fungi. Pp. 375-407 in G. H. Coombs, K. Vickerman, M. A. Sleigh, and A. Warren, eds. Evolutionary relationships among protozoa. Kluwer.
-
(1998)
Evolutionary Relationships among Protozoa
, pp. 375-407
-
-
-
18
-
-
0031663016
-
A revised six kingdom system of life
-
_. 1998b. A revised six kingdom system of life. Biol. Rev. Camb. Philos. Soc. 73:203-266.
-
(1998)
Biol. Rev. Camb. Philos. Soc.
, vol.73
, pp. 203-266
-
-
-
19
-
-
0003238139
-
Flagellate megaevolution: The basis for eukaryote diversification
-
J. R. Green and B. S. C. Leadbeater, eds. Taylor & Francis
-
_. 2000. Flagellate megaevolution: the basis for eukaryote diversification. Pp. 361-390 in J. R. Green and B. S. C. Leadbeater, eds. The flagellates. Taylor & Francis.
-
(2000)
The Flagellates
, pp. 361-390
-
-
-
20
-
-
0003042680
-
What are fungi?
-
D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds. Springer Verlag, Heidelberg, Germany
-
_. 2001. What are fungi? Pp. 3-37 in D. J. McLaughlin, E. G. McLaughlin, and P. A. Lemke, eds. The Mycota VII part A, systematics and evolution. Springer Verlag, Heidelberg, Germany.
-
(2001)
The Mycota VII Part A, Systematics and Evolution
, pp. 3-37
-
-
-
21
-
-
0036208071
-
The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
-
_. 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int. J. Syst. Evol. Microbiol. 52:297-354.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 297-354
-
-
-
22
-
-
0029798710
-
Corallochytrium, an enigmatic non-flagellate protozoan related to choanoflagellates
-
Cavalier-Smith, T., and M. T. E. P. Allsopp. 1996. Corallochytrium, an enigmatic non-flagellate protozoan related to choanoflagellates. Eur. J. Protistol. 32:306-310.
-
(1996)
Eur. J. Protistol.
, vol.32
, pp. 306-310
-
-
Cavalier-Smith, T.1
Allsopp, M.T.E.P.2
-
23
-
-
0029121044
-
The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates
-
Cavalier-Smith, T., and E. E. Chao. 1995. The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates. Proc. R. Soc. Lond. B 261:1-9.
-
(1995)
Proc. R. Soc. Lond. B
, vol.261
, pp. 1-9
-
-
Cavalier-Smith, T.1
Chao, E.E.2
-
24
-
-
0037403365
-
Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution
-
_. 2003. Phylogeny of choanozoa, apusozoa, and other protozoa and early eukaryote megaevolution. J. Mol. Evol. 56:540-563.
-
(2003)
J. Mol. Evol.
, vol.56
, pp. 540-563
-
-
-
25
-
-
0035544654
-
Defining phyla: Evolutionary pathways to metozoan body plans
-
Collins, A. G., and J. W. Valentine. 2001. Defining phyla: evolutionary pathways to metozoan body plans. Evol. Dev. 3:432-442.
-
(2001)
Evol. Dev.
, vol.3
, pp. 432-442
-
-
Collins, A.G.1
Valentine, J.W.2
-
26
-
-
0020964297
-
Complete nucleotide-sequence of bacteriophage-T7 DNA and the locations of T7 genetic elements
-
Dunn, J. J., and F. W. Studier. 1983. Complete nucleotide-sequence of bacteriophage-T7 DNA and the locations of T7 genetic elements. J. Mol. Biol. 166:477-535.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 477-535
-
-
Dunn, J.J.1
Studier, F.W.2
-
27
-
-
0141459142
-
Nuclearia pattersoni sp. n. (Filosea), a new species of amphizoic amoeba isolated from gills of roach (Rutilus rutilus), and its rickettsial endosymbiont
-
Dykhová, I., M. Veverková, I. Fiala, B. Macháèková, and H. Pecková. 2003. Nuclearia pattersoni sp. n. (Filosea), a new species of amphizoic amoeba isolated from gills of roach (Rutilus rutilus), and its rickettsial endosymbiont. Folia Parasitol. 50:161-170.
-
(2003)
Folia Parasitol.
, vol.50
, pp. 161-170
-
-
Dykhová, I.1
Veverková, M.2
Fiala, I.3
Macháè ková, B.4
Pecková, H.5
-
28
-
-
0036124759
-
Re-examining alveolate evolution using multiple protein molecular phylogenies
-
Fast, N. M., L. Xue, S. Bingham, and P. J. Keeling. 2002. Re-examining alveolate evolution using multiple protein molecular phylogenies. J. Eukaryot. Microbiol. 49:30-37.
-
(2002)
J. Eukaryot. Microbiol.
, vol.49
, pp. 30-37
-
-
Fast, N.M.1
Xue, L.2
Bingham, S.3
Keeling, P.J.4
-
30
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
31
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
32
-
-
13244270095
-
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
-
Harper, J. T., E. Waanders, and P. J. Keeling. 2005. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int. J. Syst. Evol. Microbiol. 55:487-496.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 487-496
-
-
Harper, J.T.1
Waanders, E.2
Keeling, P.J.3
-
33
-
-
0003932987
-
-
Thieme Medical Publishers, Inc., New York
-
Hausmann, K., and N. Hülsmann. 1996. Protozoology. Thieme Medical Publishers, Inc., New York.
-
(1996)
Protozoology
-
-
Hausmann, K.1
Hülsmann, N.2
-
34
-
-
0003551059
-
-
Cambridge University Press, Cambridge
-
Hawksworth, D. L., P. M. Kirk, B. C. Sutton, and D. N. Pelger. 1995. Ainsworth's & Bisby's dictionary of the fungi. Cambridge University Press, Cambridge.
-
(1995)
Ainsworth's & Bisby's Dictionary of the Fungi
-
-
Hawksworth, D.L.1
Kirk, P.M.2
Sutton, B.C.3
Pelger, D.N.4
-
35
-
-
0032773407
-
Phylogenetic analysis of Rhynosporidium seeberi's 18S small-subunit ribosomal DNA groups this pathogen among members of the protoctistan Mesomycetozoa clade
-
Herr, R. A., L. Ajello, J. W. Taylor, S. N. Arseculeratne, and L. Mendoza. 1999. Phylogenetic analysis of Rhynosporidium seeberi's 18S small-subunit ribosomal DNA groups this pathogen among members of the protoctistan Mesomycetozoa clade. J. Clin. Microbiol. 37:2750-2754.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 2750-2754
-
-
Herr, R.A.1
Ajello, L.2
Taylor, J.W.3
Arseculeratne, S.N.4
Mendoza, L.5
-
36
-
-
0036020262
-
The symbiont Capsaspora owczarzaki, nov. gen. nov. sp., isolated from three strains of the pulmonate snail Biomphalaria glabrata is related to members of the Mesomycetozoea
-
Hertel, L. A., C. J. Bayne, and E. S. Loker. 2003. The symbiont Capsaspora owczarzaki, nov. gen. nov. sp., isolated from three strains of the pulmonate snail Biomphalaria glabrata is related to members of the Mesomycetozoea. Int. J. Parasitol. 32:1183-1191.
-
(2003)
Int. J. Parasitol.
, vol.32
, pp. 1183-1191
-
-
Hertel, L.A.1
Bayne, C.J.2
Loker, E.S.3
-
37
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
38
-
-
0034039808
-
Evolution of the eukaryotic translation termination system: Origins of release factors
-
Inagaki, Y., and W. F. Doolittle. 2000. Evolution of the eukaryotic translation termination system: origins of release factors. Mol. Biol. Evol. 17:882-889.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 882-889
-
-
Inagaki, Y.1
Doolittle, W.F.2
-
39
-
-
0034120954
-
Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics
-
James, T. Y., D. Porter, C. A. Leander, R. Vilgalys, and J. E. Longcore. 2000. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78:336-350.
-
(2000)
Can. J. Bot.
, vol.78
, pp. 336-350
-
-
James, T.Y.1
Porter, D.2
Leander, C.A.3
Vilgalys, R.4
Longcore, J.E.5
-
40
-
-
0032144313
-
Relationships of the insect-pathogenic order Entomophthorales (Zygomycota, Fungi) based on phylogenetic analysis of nuclear small subunit ribosomal DNA sequences (SSU rDNA)
-
Jensen, A. B., A. Gargas, J. Eilenberg, and S. Rosendahl. 1998. Relationships of the insect-pathogenic order Entomophthorales (Zygomycota, Fungi) based on phylogenetic analysis of nuclear small subunit ribosomal DNA sequences (SSU rDNA). Fungal Genet. Biol. 24:325-334.
-
(1998)
Fungal Genet. Biol.
, vol.24
, pp. 325-334
-
-
Jensen, A.B.1
Gargas, A.2
Eilenberg, J.3
Rosendahl, S.4
-
41
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
42
-
-
0000732090
-
Evolution of protein molecules
-
H. M. Munro, ed. Academic Press, New York
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-132 in H. M. Munro, ed. Mammalian protein metabolism. Volume 3. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, vol.3
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
43
-
-
0034903594
-
Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
-
Keeling, P. J. 2001. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol. Biol. Evol. 18:1551-1557.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1551-1557
-
-
Keeling, P.J.1
-
44
-
-
0037384263
-
Congruent evidence from α-tubulin and β-tubulin gene phylogenies for a zygomycete origin of microsporidia
-
_. 2003. Congruent evidence from α-tubulin and β-tubulin gene phylogenies for a zygomycete origin of microsporidia. Fungal Genet. Biol. 38:298-309.
-
(2003)
Fungal Genet. Biol.
, vol.38
, pp. 298-309
-
-
-
45
-
-
0032819620
-
The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha, beta, and gamma tubulin genes
-
Keeling, P. J., J. A. Deane, C. Hink-Schauer, S. E. Douglas, U.-G. Maier, and G. I. McFadden. 1999. The secondary endosymbiont of the Cryptomonad Guillardia theta contains alpha, beta, and gamma tubulin genes. Mol. Biol. Evol. 16:1308-1313.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1308-1313
-
-
Keeling, P.J.1
Deane, J.A.2
Hink-Schauer, C.3
Douglas, S.E.4
Maier, U.-G.5
McFadden, G.I.6
-
46
-
-
0036406924
-
Microsporidia: Biology and evolution of highly reduced intracellular parasites
-
Keeling, P. J., and N. M. Fast. 2002. Microsporidia: biology and evolution of highly reduced intracellular parasites. Annu. Rev. Microbiol. 56:93-116.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 93-116
-
-
Keeling, P.J.1
Fast, N.M.2
-
47
-
-
7444263971
-
A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor-1 alpha
-
USA
-
Keeling, P. J., and Y. Inagaki. 2004. A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor-1 alpha. Proc. Natl. Acad. Sci. USA 101:15380-15385.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 15380-15385
-
-
Keeling, P.J.1
Inagaki, Y.2
-
48
-
-
0033977617
-
Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi
-
Keeling, P. J., M. A. Luker, and J. D. Palmer. 2000. Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Mol. Biol. Evol. 17:23-31.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 23-31
-
-
Keeling, P.J.1
Luker, M.A.2
Palmer, J.D.3
-
49
-
-
0003551059
-
-
Cabi Publishing, Wallingford, United Kingdom
-
Kirk, P. M., P. F. Cannon, J. C. David, and J. A. Stalpers. 2001. Ainsworth & Bisby's dictionary of the fungi. Cabi Publishing, Wallingford, United Kingdom.
-
(2001)
Ainsworth & Bisby's Dictionary of the Fungi
-
-
Kirk, P.M.1
Cannon, P.F.2
David, J.C.3
Stalpers, J.A.4
-
50
-
-
0026613365
-
The early evolution of eukaryotes: A geological perspective
-
Knoll, A. H. 1992. The early evolution of eukaryotes: a geological perspective. Science 256:622-627.
-
(1992)
Science
, vol.256
, pp. 622-627
-
-
Knoll, A.H.1
-
51
-
-
0037108325
-
The closest unicellular relatives of animals
-
Lang, B. F., C. O'Kelly, T. Nerad, M. W. Gray, and G. Burger. 2002. The closest unicellular relatives of animals. Curr. Biol. 12:1773-1778.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1773-1778
-
-
Lang, B.F.1
O'Kelly, C.2
Nerad, T.3
Gray, M.W.4
Burger, G.5
-
52
-
-
0035964296
-
Molecular phylogenetic analysis of the mitochondrial ADP-ATP carriers: The Plantae/Fungi/Metazoa trichotomy revisited
-
USA
-
Löytynoja, A., and M. C. Milinkovitch. 2001. Molecular phylogenetic analysis of the mitochondrial ADP-ATP carriers: the Plantae/Fungi/Metazoa trichotomy revisited. Proc. Natl. Acad. Sci. USA 98:10202-10207.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 10202-10207
-
-
Löytynoja, A.1
Milinkovitch, M.C.2
-
53
-
-
32044471897
-
Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits
-
Lutzoni, F., F. Kauff, C. J. Cox et al. (38 co-authors). 2004. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am. J. Bot. 91:1446-1480.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauff, F.2
Cox, C.J.3
-
54
-
-
85012998553
-
Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa
-
Medina, M., A. G. Collins, J. W. Taylor, J. W. Valentine, J. H. Lipp, L. A. Amaral-Zettler, and M. L. Sogin. 2003. Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa. Int. J. Astrobiology 3:203-211.
-
(2003)
Int. J. Astrobiology
, vol.3
, pp. 203-211
-
-
Medina, M.1
Collins, A.G.2
Taylor, J.W.3
Valentine, J.W.4
Lipp, J.H.5
Amaral-Zettler, L.A.6
Sogin, M.L.7
-
55
-
-
0036407336
-
The class Mesomycetozoea: A heterogeneous group of microorganisms near the animal-fungal boundary
-
Mendoza, L., J. W. Taylor, and L. Ajello. 2002. The class Mesomycetozoea: a heterogeneous group of microorganisms near the animal-fungal boundary. Annu. Rev. Microbiol. 56:315-344.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 315-344
-
-
Mendoza, L.1
Taylor, J.W.2
Ajello, L.3
-
56
-
-
0032744297
-
The diversity of eukaryotes
-
Patterson, D. J. 1999. The diversity of eukaryotes. Am. Nat. 154:S96-S124.
-
(1999)
Am. Nat.
, vol.154
-
-
Patterson, D.J.1
-
57
-
-
17744379783
-
The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
-
Philip, G. K., C. J. Creevey and J. O. McInerney. 2005. The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol. Biol. Evol. 22:1175-1184.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1175-1184
-
-
Philip, G.K.1
Creevey, C.J.2
McInerney, J.O.3
-
58
-
-
0034019771
-
Phylogeny of eukaryotes based on ribosomal RNA: Long branch attraction and models of sequence evolution
-
Philippe, H., and A. Germot. 2000. Phylogeny of eukaryotes based on ribosomal RNA: long branch attraction and models of sequence evolution. Mol. Biol. Evol. 17:830-834.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 830-834
-
-
Philippe, H.1
Germot, A.2
-
59
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
60
-
-
0029954973
-
A novel clade of protistan parasites near the animal-fungal divergence
-
USA
-
Ragan, M. A., C. L. Goggins, R. J. Cawthorn, L. Cerenius, A. V. C. Jamieson, S. M. Plourde, T. G. Rand, K. Söderhäll, and R. R. Gutell. 1996. A novel clade of protistan parasites near the animal-fungal divergence. Proc. Natl. Acad. Sci. USA 93:11907-11912.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 11907-11912
-
-
Ragan, M.A.1
Goggins, C.L.2
Cawthorn, R.J.3
Cerenius, L.4
Jamieson, A.V.C.5
Plourde, S.M.6
Rand, T.G.7
Söderhäll, K.8
Gutell, R.R.9
-
61
-
-
0345149777
-
Are Ichthyosporean animals or fungi? Bayesian phylogenetic analysis of elongation factor 1α of Ichthyophonus irregularis
-
Ragan, M. A., C. A. Murphy, and T. G. Rand. 2003. Are Ichthyosporean animals or fungi? Bayesian phylogenetic analysis of elongation factor 1α of Ichthyophonus irregularis. Mol. Phylogenet. Evol. 29:550-562.
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 550-562
-
-
Ragan, M.A.1
Murphy, C.A.2
Rand, T.G.3
-
62
-
-
13844308296
-
Gene discovery and expression profile analysis through sequencing of expressed sequence tags from different developmental stages of the chytridiomycete Blastocladiella emersonii
-
Ribichich, K. F., S. M. Salem-Izacc, R. C. Georg, R. Z. N. Vêncio, L. D. Navarro, and S. L. Gomes. 2005. Gene discovery and expression profile analysis through sequencing of expressed sequence tags from different developmental stages of the chytridiomycete Blastocladiella emersonii. Eukaryot Cell 2: 455-464.
-
(2005)
Eukaryot Cell
, vol.2
, pp. 455-464
-
-
Ribichich, K.F.1
Salem-Izacc, S.M.2
Georg, R.C.3
Vêncio, R.Z.N.4
Navarro, L.D.5
Gomes, S.L.6
-
63
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
Rodríguez, F., J. L. Oliver, A. Marín, and J. R. Medina. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142:485-501.
-
(1990)
J. Theor. Biol.
, vol.142
, pp. 485-501
-
-
Rodríguez, F.1
Oliver, J.L.2
Marín, A.3
Medina, J.R.4
-
64
-
-
0042313795
-
Conflicting phylogenetic signals at the base of the metazoan tree
-
Rokas, A., N. King, J. Finnerty, and S. B. Carroll. 2003. Conflicting phylogenetic signals at the base of the metazoan tree. Evol. Dev. 5:346-359.
-
(2003)
Evol. Dev.
, vol.5
, pp. 346-359
-
-
Rokas, A.1
King, N.2
Finnerty, J.3
Carroll, S.B.4
-
65
-
-
9244242090
-
Capsaspora owczarzaki is and independent opisthokont lineage
-
Ruiz-Trillo, I., Y. Inagaki, L. A. Davis, S. Sperstad, B. Landfald, and A. J. Roger. 2004. Capsaspora owczarzaki is and independent opisthokont lineage. Curr. Biol. 14:R946-R947.
-
(2004)
Curr. Biol.
, vol.14
-
-
Ruiz-Trillo, I.1
Inagaki, Y.2
Davis, L.A.3
Sperstad, S.4
Landfald, B.5
Roger, A.J.6
-
66
-
-
0004136246
-
-
Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
67
-
-
0035711692
-
A new fungal phylum, the Glomeromycota: Phylogeny and evolution
-
Schüßler, A., D. Scwarzott, and C. Walker. 2001. A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol. Res. 105:1414-1421.
-
(2001)
Mycol. Res.
, vol.105
, pp. 1414-1421
-
-
Schüßler, A.1
Scwarzott, D.2
Walker, C.3
-
68
-
-
0007697712
-
Phylum Rhizopoda
-
L. Margulis, J. O. Corliss, M. Melkonian, and D. J. Chapman, eds. Jones and Bartlett Publishers, Boston
-
Schuster, F. L. 1990. Phylum Rhizopoda. Pp. 3-18 in L. Margulis, J. O. Corliss, M. Melkonian, and D. J. Chapman, eds. Handbook of Protoctista. Jones and Bartlett Publishers, Boston.
-
(1990)
Handbook of Protoctista
, pp. 3-18
-
-
Schuster, F.L.1
-
69
-
-
13844319861
-
Comparative mitochondrial genomics in zygomycetes: Bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms
-
Seif, E., L. Leigh, I. Roewer, L. Forget, and B. F. Lang. 2005. Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms. Nucleic Acids Res. 33:734-744.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 734-744
-
-
Seif, E.1
Leigh, L.2
Roewer, I.3
Forget, L.4
Lang, B.F.5
-
70
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492-508.
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
71
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
72
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
_. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
-
74
-
-
0041919404
-
The root of the eukaryote tree pinpointed
-
Stechmann, A., and T. Cavalier-Smith. 2003. The root of the eukaryote tree pinpointed. Curr. Biol. 17:R665-R666.
-
(2003)
Curr. Biol.
, vol.17
-
-
Stechmann, A.1
Cavalier-Smith, T.2
-
75
-
-
9244258295
-
Origin and evolution of animals, fungi and their unicellular allies
-
R. Hirt and D. Horner, eds. Taylor and Francis, London
-
Steenkamp, E. T., and S. L. Baldauf. 2004. Origin and evolution of animals, fungi and their unicellular allies. Pp. 109-129 in R. Hirt and D. Horner, eds. Organelles, genomes and Eukaryote phylogeny. Taylor and Francis, London.
-
(2004)
Organelles, Genomes and Eukaryote Phylogeny
, pp. 109-129
-
-
Steenkamp, E.T.1
Baldauf, S.L.2
-
76
-
-
0032792640
-
Distinguishing Fusarium subglutinans f.sp. pini by histone gene sequence data
-
Steenkamp, E. T., B. D. Wingfield, T. A. Coutinho, M. J. Wingfield, and W. F. O. Marasas. 1999. Distinguishing Fusarium subglutinans f.sp. pini by histone gene sequence data. Appl. Environ. Microbiol. 65:3401-3406.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3401-3406
-
-
Steenkamp, E.T.1
Wingfield, B.D.2
Coutinho, T.A.3
Wingfield, M.J.4
Marasas, W.F.O.5
-
78
-
-
0842331071
-
Molecular phylogeny of Zygomycota based on EF-1α and RPB1 sequences: Limitations and utility of alternative markers to rDNA
-
Tanabe, Y., M. Saikawa, M. M. Watanabe, and J. Sugiyama. 2003. Molecular phylogeny of Zygomycota based on EF-1α and RPB1 sequences: limitations and utility of alternative markers to rDNA. Mol. Phylogenet. Evol. 30:438-449.
-
(2003)
Mol. Phylogenet. Evol.
, vol.30
, pp. 438-449
-
-
Tanabe, Y.1
Saikawa, M.2
Watanabe, M.M.3
Sugiyama, J.4
-
79
-
-
1542578386
-
The multimeric β-thymosin found in nematodes and arthropods is not a synapomorphy of the Ecdysozoa
-
Telford, M. J. 2004. The multimeric β-thymosin found in nematodes and arthropods is not a synapomorphy of the Ecdysozoa. Evol. Dev. 6:90-94.
-
(2004)
Evol. Dev.
, vol.6
, pp. 90-94
-
-
Telford, M.J.1
-
80
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
81
-
-
0034538854
-
An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances
-
Van de Peer, Y., S. L. Baldauf, W. F. Doolittle, and A. Meyer. 2000. An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances. J. Mol. Evol. 51:565-576.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 565-576
-
-
Van De Peer, Y.1
Baldauf, S.L.2
Doolittle, W.F.3
Meyer, A.4
-
82
-
-
0031436828
-
Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA
-
Van de Peer, Y., and R. De Wachter. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA. J. Mol. Evol. 45:619-630.
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 619-630
-
-
Van De Peer, Y.1
De Wachter, R.2
-
83
-
-
0027241482
-
Monophyletic origins of the Metazoa: An evolutionary link with fungi
-
Wainright, P. O., G. Hinkle, M. L. Sogin, and S. K. Stickel. 1993. Monophyletic origins of the Metazoa: an evolutionary link with fungi. Science 260:340-342.
-
(1993)
Science
, vol.260
, pp. 340-342
-
-
Wainright, P.O.1
Hinkle, G.2
Sogin, M.L.3
Stickel, S.K.4
-
84
-
-
0034848170
-
DAMBE: Data analysis in molecular biology and evolution
-
Xia, X., and Z. Xie. 2001. DAMBE: data analysis in molecular biology and evolution. J. Hered. 92:371-373.
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
85
-
-
0037180558
-
The single, ancient origin of chromist plastids
-
USA
-
Yoon, H. S., J. D. Hackett, G. Pinto, and D. Bhattacharya. 2002. The single, ancient origin of chromist plastids. Proc. Natl. Acad. Sci. USA 99:15507-15512.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 15507-15512
-
-
Yoon, H.S.1
Hackett, J.D.2
Pinto, G.3
Bhattacharya, D.4
|