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Volumn 16, Issue 9, 1999, Pages 1270-1279

Long-branch attraction and the rDNA model of early eukaryotic evolution

Author keywords

Amitochondriate amoebae; Evolution; Long branch attraction; Mastigamoeba; Phylogenetic; Ssu rRNA

Indexed keywords

RIBOSOME DNA;

EID: 0032871269     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026217     Document Type: Article
Times cited : (138)

References (47)
  • 1
    • 0030667683 scopus 로고    scopus 로고
    • Origin and evolution of the slime molds (Mycetozoa)
    • BALDAUF, S. L., and W. F. DOOLITTLE. 1997. Origin and evolution of the slime molds (Mycetozoa). Proc. Natl. Acad. Sci. USA 94:12007-12012.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 12007-12012
    • Baldauf, S.L.1    Doolittle, W.F.2
  • 2
    • 1542661234 scopus 로고
    • Flagellar and cytoskeletal systems in amitochondrial flagellates: Archamoeba, Metamonada and Parabasala
    • BRUGEROLLE, G. 1991. Flagellar and cytoskeletal systems in amitochondrial flagellates: Archamoeba, Metamonada and Parabasala. Protoplasma 164:70-90.
    • (1991) Protoplasma , vol.164 , pp. 70-90
    • Brugerolle, G.1
  • 3
    • 0031928773 scopus 로고    scopus 로고
    • New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences
    • BUDIN, K., and H. PHILIPPE. 1998. New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences. Mol. Biol. Evol. 15:943-956.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 943-956
    • Budin, K.1    Philippe, H.2
  • 4
    • 0025875099 scopus 로고
    • Archamoebae: The ancestral eukaryotes?
    • CAVALIER-SMITH, T. 1991. Archamoebae: the ancestral eukaryotes? Biosystems 25:25-38.
    • (1991) Biosystems , vol.25 , pp. 25-38
    • Cavalier-Smith, T.1
  • 5
    • 0026306756 scopus 로고
    • Early Cambrian Foraminifera from West Africa
    • CULVER, S. J. 1991. Early Cambrian Foraminifera from West Africa. Science 254:689-691.
    • (1991) Science , vol.254 , pp. 689-691
    • Culver, S.J.1
  • 6
    • 0001165539 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 25: 401-410.
    • (1978) Syst. Zool. , vol.25 , pp. 401-410
    • Felsenstein, J.1
  • 7
    • 0000122573 scopus 로고
    • PHYLIP - Phylogenetic inference package (version 3.2)
    • _. 1989. PHYLIP - phylogenetic inference package (version 3.2). Cladistics 5:164-165.
    • (1989) Cladistics , vol.5 , pp. 164-165
  • 8
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: Update and reevaluation
    • FENG, D.-F., G. CHO, and R. F. DOOLITTLE. 1997. Determining divergence times with a protein clock: update and reevaluation. Proc. Natl. Acad. Sci. USA 94:13028-13033.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13028-13033
    • Feng, D.-F.1    Cho, G.2    Doolittle, R.F.3
  • 9
    • 0030844640 scopus 로고    scopus 로고
    • Evidence for loss of mitochondria in Microsporidia from a mitochondrial-type HSP 70 in Nosema locustae
    • GERMOT, A., H. PHILIPPE, and H. LE GUYADER. 1997. Evidence for loss of mitochondria in Microsporidia from a mitochondrial-type HSP 70 in Nosema locustae. Mol. Biochem. Parasitol. 87:159-168.
    • (1997) Mol. Biochem. Parasitol. , vol.87 , pp. 159-168
    • Germot, A.1    Philippe, H.2    Le Guyader, H.3
  • 12
    • 0004859678 scopus 로고
    • Ribosomal RNA trees misleading?
    • HASEGAWA, M., and T. HASHIMOTO. 1993. Ribosomal RNA trees misleading? Nature 326:411-414.
    • (1993) Nature , vol.326 , pp. 411-414
    • Hasegawa, M.1    Hashimoto, T.2
  • 13
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • HENDY, M. D., and D. PENNY. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309.
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 14
    • 0028359393 scopus 로고
    • The unusually long small subunit ribosomal RNA of phreatamoeba balamuthi
    • HINKLE, G., D. D. LEIPE, T. A. NERAD, and M. L. SOGIN. 1994. The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi. Nucleic Acids Res. 22:465-469.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 465-469
    • Hinkle, G.1    Leipe, D.D.2    Nerad, T.A.3    Sogin, M.L.4
  • 15
    • 0027661489 scopus 로고
    • The evolution of the Vahlkampfiidae as deduced from 16s-like ribosomal RNA analysis
    • HINKLE, G., and M. L. SOGIN. 1993. The evolution of the Vahlkampfiidae as deduced from 16s-like ribosomal RNA analysis. J. Eukaryot. Microbiol. 40:599-603.
    • (1993) J. Eukaryot. Microbiol. , vol.40 , pp. 599-603
    • Hinkle, G.1    Sogin, M.L.2
  • 16
    • 0033582323 scopus 로고    scopus 로고
    • Microsporidia are related to fungi: Evidence from the largest subunit of RNA polymerase II and other proteins
    • HIRT, R. P., J. M. LOGSDON, B. HEALY, M. W. DOREY, W. F. DOOLITTLE, and T. M. EMBLEY. 1999. Microsporidia are related to fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc. Natl. Acad. Sci. USA 96:580-585.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 580-585
    • Hirt, R.P.1    Logsdon, J.M.2    Healy, B.3    Dorey, M.W.4    Doolittle, W.F.5    Embley, T.M.6
  • 17
    • 0029908930 scopus 로고    scopus 로고
    • Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
    • KEELING, P. J., and W. F. DOOLITTLE. 1996. Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol. Biol. Evol. 13:1297-1305.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1297-1305
    • Keeling, P.J.1    Doolittle, W.F.2
  • 19
    • 0024307824 scopus 로고
    • Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • KISHINO, H., and M. HASEGAWA. 1989. Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 20
    • 0026613365 scopus 로고
    • The early evolution of eukaryotes: A geological perspective
    • KNOLL, A. H. 1992. The early evolution of eukaryotes: a geological perspective. Science 256:622-627.
    • (1992) Science , vol.256 , pp. 622-627
    • Knoll, A.H.1
  • 21
    • 0029876868 scopus 로고    scopus 로고
    • Evolutionary relationships of eukaryotic organisms
    • KUMAR, S., and A. RZHETSKY. 1996. Evolutionary relationships of eukaryotic organisms. J. Mol. Evol. 42:183-193.
    • (1996) J. Mol. Evol. , vol.42 , pp. 183-193
    • Kumar, S.1    Rzhetsky, A.2
  • 22
    • 0032515984 scopus 로고    scopus 로고
    • Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria
    • LAMBERT, J. D., and N. A. MORAN. 1998. Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria. Proc. Natl. Acad. Sci. USA 95:4458-4462.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4458-4462
    • Lambert, J.D.1    Moran, N.A.2
  • 24
    • 0025606351 scopus 로고
    • Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison
    • LOOMIS, W. F., and D. W. SMITH. 1990. Molecular phylogeny of Dictyostelium discoideum by protein sequence comparison. Proc. Natl. Acad. Sci. USA 87:9093-9097.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 9093-9097
    • Loomis, W.F.1    Smith, D.W.2
  • 25
    • 0030773008 scopus 로고    scopus 로고
    • Accelerated evolution as a consequence of transitions to mutualism
    • LUTZONI, F., and M. PAGEL. 1997. Accelerated evolution as a consequence of transitions to mutualism. Proc. Natl. Acad. Sci. USA 94:11422-11427.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 11422-11427
    • Lutzoni, F.1    Pagel, M.2
  • 26
    • 0031307210 scopus 로고    scopus 로고
    • Escaping from the Felsenstein zone by detecting long branches in phylogenetic data
    • LYONS-WEILER, J., and G. A. HOELZER. 1997. Escaping from the Felsenstein zone by detecting long branches in phylogenetic data. Mol. Phylogenet. Evol. 8:375-384.
    • (1997) Mol. Phylogenet. Evol. , vol.8 , pp. 375-384
    • Lyons-Weiler, J.1    Hoelzer, G.A.2
  • 27
    • 0030000952 scopus 로고    scopus 로고
    • Relative apparent synapomorphy analyis (RASA). I. The statistical measurement of phylogenetic signal
    • LYONS-WEILER, J., G. A. HOELZER, and R. J. TAUSCH. 1996. Relative apparent synapomorphy analyis (RASA). I. The statistical measurement of phylogenetic signal. Mol. Biol. Evol. 13:749-757.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 749-757
    • Lyons-Weiler, J.1    Hoelzer, G.A.2    Tausch, R.J.3
  • 30
    • 0032559280 scopus 로고    scopus 로고
    • Evolution: The coming of age of molecular systematics
    • MALEY, L. E., and C. R. MARSHALL. 1998. Evolution: the coming of age of molecular systematics. Science 279:505-506.
    • (1998) Science , vol.279 , pp. 505-506
    • Maley, L.E.1    Marshall, C.R.2
  • 32
    • 0030918430 scopus 로고    scopus 로고
    • Extreme differences in rates of molecular evolution of Foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record
    • PAWLOWSKI, J., I. BOLIVAR, J. F. FAHRNI, C. DE VARGAS, M. GOUY, and L. ZANINETTI. 1997. Extreme differences in rates of molecular evolution of Foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record. Mol. Biol. Evol. 14:489-505.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 489-505
    • Pawlowski, J.1    Bolivar, I.2    Fahrni, J.F.3    De Vargas, C.4    Gouy, M.5    Zaninetti, L.6
  • 33
    • 0002214837 scopus 로고    scopus 로고
    • The molecular phylogeny of Eukaryota: Solid facts and uncertainties
    • G. H. COOMBS, K. VICKERMAN, M. A. SLEIGH, and A. WARREN, eds. Chapman and Hall, London
    • PHILLIPE, H., and A. ADOUTTE. 1998. The molecular phylogeny of Eukaryota: solid facts and uncertainties. Pp. 25-56 in G. H. COOMBS, K. VICKERMAN, M. A. SLEIGH, and A. WARREN, eds. Evolutionary relationships among protozoa. Chapman and Hall, London.
    • (1998) Evolutionary Relationships among Protozoa , pp. 25-56
    • Phillipe, H.1    Adoutte, A.2
  • 34
    • 0026856064 scopus 로고
    • Phylogenetic analyses of the Diplomonadida (Wenyon, 1926) Bergerolle, 1975: Evidence for heterochrony in protozoa and against Giardia lamblia as a "missing link."
    • SIDDALL, M. E., H. HONG, and S. S. DESSER. 1992. Phylogenetic analyses of the Diplomonadida (Wenyon, 1926) Bergerolle, 1975: evidence for heterochrony in protozoa and against Giardia lamblia as a "missing link." J. Protozool. 3:361-367.
    • (1992) J. Protozool. , vol.3 , pp. 361-367
    • Siddall, M.E.1    Hong, H.2    Desser, S.S.3
  • 35
    • 0030944830 scopus 로고    scopus 로고
    • The organisation of Mastigamoeba schizophrenia n. sp.: More evidence of ultrastructural idiosyncrasy and simplicity in pelobiont protists
    • SIMPSON, A. G. B., C. BERNARD, T. FENCHEL, and D. J. PATTERSON. 1997. The organisation of Mastigamoeba schizophrenia n. sp.: more evidence of ultrastructural idiosyncrasy and simplicity in pelobiont protists. Eur. J. Protistol. 33:87-98.
    • (1997) Eur. J. Protistol. , vol.33 , pp. 87-98
    • Simpson, A.G.B.1    Bernard, C.2    Fenchel, T.3    Patterson, D.J.4
  • 36
    • 0031459312 scopus 로고    scopus 로고
    • History assignment: When was the mitochondrion founded
    • SOGIN, M. L. 1997. History assignment: when was the mitochondrion founded. Curr. Opin. Genet. Devel. 7:792-799.
    • (1997) Curr. Opin. Genet. Devel. , vol.7 , pp. 792-799
    • Sogin, M.L.1
  • 37
    • 0024962760 scopus 로고
    • Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia
    • SOGIN, M. L., J. H. GUNDERSON, H. J. ELWOOD, R. A. ALONSO, and D. A. PEATTIE. 1989. Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75-77.
    • (1989) Science , vol.243 , pp. 75-77
    • Sogin, M.L.1    Gunderson, J.H.2    Elwood, H.J.3    Alonso, R.A.4    Peattie, D.A.5
  • 38
    • 0032578482 scopus 로고    scopus 로고
    • Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
    • STILLER, J. W., E. C. S. DUFFIELD, and B. D. HALL. 1998. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II. Proc. Natl. Acad. Sci. USA 95:11769-11774.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 11769-11774
    • Stiller, J.W.1    Duffield, E.C.S.2    Hall, B.D.3
  • 39
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • STRIMMER, K., and A. VON HAESELER. 1996. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 41
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
    • TEMPLETON, A. R. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-244.
    • (1983) Evolution , vol.37 , pp. 221-244
    • Templeton, A.R.1
  • 42
    • 0031436828 scopus 로고    scopus 로고
    • Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site variation in 18s rRNA
    • VAN DE PEER, Y., and R. DE WACHTER. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site variation in 18s rRNA. J. Mol. Evol. 45: 619-630.
    • (1997) J. Mol. Evol. , vol.45 , pp. 619-630
    • Van De Peer, Y.1    De Wachter, R.2
  • 43
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • M. A. INNIS, D. H. GELFAND, J. J. SNINSKY, and T. J. WHITE, eds. Academic Press, San Diego
    • WHITE, T. J., T. BRUNS, S. LEE, and J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in M. A. INNIS, D. H. GELFAND, J. J. SNINSKY, and T. J. WHITE, eds. PCR protocols: a guide to methods and applications. Academic Press, San Diego.
    • (1990) PCR Protocols: a Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 44
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • WOESE, C. 1998. The universal ancestor. Proc. Natl. Acad. Sci. USA 95:6854-6859.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 6854-6859
    • Woese, C.1
  • 45
    • 0031407579 scopus 로고    scopus 로고
    • Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: Crown eukaryotes date back to the paleoproterozoic
    • WRIGHT, A. D. G., and D. H. LYNN. 1997. Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: crown eukaryotes date back to the paleoproterozoic. Arch. Protistenkd. 148:329-341.
    • (1997) Arch. Protistenkd. , vol.148 , pp. 329-341
    • Wright, A.D.G.1    Lynn, D.H.2
  • 46
    • 0032484945 scopus 로고    scopus 로고
    • Three-dimensional preservation of algae and animal embryos in a Neoproterozoic phosphorite
    • XIAO, S., Y. ZHANG, and A. H. KNOLL. 1998. Three-dimensional preservation of algae and animal embryos in a Neoproterozoic phosphorite. Nature 391:553-558.
    • (1998) Nature , vol.391 , pp. 553-558
    • Xiao, S.1    Zhang, Y.2    Knoll, A.H.3
  • 47
    • 0029473453 scopus 로고
    • Megascopic multicellular organisms form the 1700-million-year old Tuanshanzi formation in the Jixian area, north China
    • ZHU, S., and H. CHEN. 1995. Megascopic multicellular organisms form the 1700-million-year old Tuanshanzi formation in the Jixian area, north China. Science 279:620-6222.
    • (1995) Science , vol.279 , pp. 620-6222
    • Zhu, S.1    Chen, H.2


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