-
1
-
-
0030333694
-
Progress with proteome projects: Why all proteins expressed by a genome should be identified and how to do it
-
Wilkins MR, Sanchez JC, Gooley AA. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev 1996; 13:19-50.
-
(1996)
Biotechnol Genet Eng Rev
, vol.13
, pp. 19-50
-
-
Wilkins, M.R.1
Sanchez, J.C.2
Gooley, A.A.3
-
2
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann M, Hendrickson RC, Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annu Rev Biochem 2001; 70:437-473.
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
3
-
-
0038116819
-
Proteomics in 2002: A year of technical development and wideranging applications
-
Figeys D. Proteomics in 2002: a year of technical development and wideranging applications. Anal Chem 2003; 75:2891-2905.
-
(2003)
Anal Chem
, vol.75
, pp. 2891-2905
-
-
Figeys, D.1
-
4
-
-
0038488193
-
A mass spectrometric journey into protein and proteome research
-
Aebersold R. A mass spectrometric journey into protein and proteome research. J Am Soc Mass Spectrom 2003; 14:685-695.
-
(2003)
J Am Soc Mass Spectrom
, vol.14
, pp. 685-695
-
-
Aebersold, R.1
-
5
-
-
0041317054
-
Electrospray wings for molecular elephants (Nobel lecture)
-
Fenn JB. Electrospray wings for molecular elephants (Nobel lecture). Angew Chem Int Ed Engl 2003; 42:3871-3894.
-
(2003)
Angew Chem Int Ed Engl
, vol.42
, pp. 3871-3894
-
-
Fenn, J.B.1
-
6
-
-
0042318496
-
The origin of macromolecule ionization by laser irradiation (Nobel lecture)
-
Tanaka K. The origin of macromolecule ionization by laser irradiation (Nobel lecture). Angew Chem Int Ed Engl 2003; 42:3860-3870.
-
(2003)
Angew Chem Int Ed Engl
, vol.42
, pp. 3860-3870
-
-
Tanaka, K.1
-
7
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko A, Wilm M, Vorm O, Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 1996; 68:850-858.
-
(1996)
Anal Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
8
-
-
0030033198
-
Parent ion scans of unseparated peptide mixtures
-
Wilm M, Neubauer G, Mann M. Parent ion scans of unseparated peptide mixtures. Anal Chem 1996; 68:527-533.
-
(1996)
Anal Chem
, vol.68
, pp. 527-533
-
-
Wilm, M.1
Neubauer, G.2
Mann, M.3
-
9
-
-
0034132537
-
The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
-
Medzihradszky KF, Campbell JM, Baldwin MA, et al. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer. Anal Chem 2000; 72:552-558.
-
(2000)
Anal Chem
, vol.72
, pp. 552-558
-
-
Medzihradszky, K.F.1
Campbell, J.M.2
Baldwin, M.A.3
-
10
-
-
28844436459
-
Multiple reaction monitoring as a method for identifying protein posttranslational modifications
-
Cox DM, Zhong F, Du M, et al. Multiple reaction monitoring as a method for identifying protein posttranslational modifications. J Biomol Tech 2004; 15:29-30.
-
(2004)
J Biomol Tech
, vol.15
, pp. 29-30
-
-
Cox, D.M.1
Zhong, F.2
Du, M.3
-
11
-
-
0037338365
-
Proteomic analysis of posttranslational modifications
-
Mann M, Jensen ON. Proteomic analysis of posttranslational modifications. Nat Biotechnol 2003; 21:255-261.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
13
-
-
0026864061
-
Quadrupole ion trap mass spectrometry: Current applications and future directions for peptide analysis
-
Cox KA, Williams JD, Cooks RG, Kaiser RE. Quadrupole ion trap mass spectrometry: current applications and future directions for peptide analysis. Biol Mass Spectrom 1992; 21:226-241.
-
(1992)
Biol Mass Spectrom
, vol.21
, pp. 226-241
-
-
Cox, K.A.1
Williams, J.D.2
Cooks, R.G.3
Kaiser, R.E.4
-
14
-
-
0027567524
-
Fourier transform mass spectrometry of high-mass biomolecules
-
Buchanan MV, Hettich RL. Fourier transform mass spectrometry of high-mass biomolecules. Anal Chem 1993; 65:245A-259A.
-
(1993)
Anal Chem
, vol.65
-
-
Buchanan, M.V.1
Hettich, R.L.2
-
15
-
-
0028363368
-
High-resolution laser desorption mass spectrometry of peptides and small proteins
-
U S A
-
McIver RT Jr, Li Y, Hunter RL. High-resolution laser desorption mass spectrometry of peptides and small proteins. Proc Natl Acad Sci U S A 1994; 91:4801-4805.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 4801-4805
-
-
McIver Jr., R.T.1
Li, Y.2
Hunter, R.L.3
-
16
-
-
0034133274
-
Electron capture dissociation for structural characterization of multiply charged protein cations
-
Zubarev RA, Horn DM, Fridriksson EK, et al. Electron capture dissociation for structural characterization of multiply charged protein cations. Anal Chem 2000; 72:563-573.
-
(2000)
Anal Chem
, vol.72
, pp. 563-573
-
-
Zubarev, R.A.1
Horn, D.M.2
Fridriksson, E.K.3
-
17
-
-
0037196338
-
Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry
-
Ge Y, Lawhorn BG, ElNaggar M, et al. Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry. J Am Chem Soc 2002; 124:672-678.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 672-678
-
-
Ge, Y.1
Lawhorn, B.G.2
ElNaggar, M.3
-
18
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
Roepstorff P, Fohlman J. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 1984; 11:601.
-
(1984)
Biomed Mass Spectrom
, vol.11
, pp. 601
-
-
Roepstorff, P.1
Fohlman, J.2
-
19
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
U S A
-
Syka JE, Coon JJ, Schroeder MJ, et al. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proc Natl Acad Sci U S A 2004; 101:9528-9533.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.1
Coon, J.J.2
Schroeder, M.J.3
-
20
-
-
18344364097
-
The Orbitrap: A new mass spectrometer
-
Hu Q, Noll RJ, Li H, et al. The Orbitrap: a new mass spectrometer. J Mass Spectrom 2005; 40:430-443.
-
(2005)
J Mass Spectrom
, vol.40
, pp. 430-443
-
-
Hu, Q.1
Noll, R.J.2
Li, H.3
-
21
-
-
30744476222
-
Performance of a linear ion trap-orbitrap hybrid for peptide analysis
-
Yates JR, Cociorva D, Liao L, Zabrouskov V. Performance of a linear ion trap-orbitrap hybrid for peptide analysis. Anal Chem 2006; 78:439-500.
-
(2006)
Anal Chem
, vol.78
, pp. 439-500
-
-
Yates, J.R.1
Cociorva, D.2
Liao, L.3
Zabrouskov, V.4
-
22
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001; 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
23
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, et al. The sequence of the human genome. Science 2001; 291:1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
24
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson NL, Anderson NG. The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics 2002; 1:845-867.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
26
-
-
3042731730
-
Industrial-scale proteomics: From litres of plasma to chemically synthesized proteins
-
Rose K, Bougeleret L, Baussant T, et al. Industrial-scale proteomics: from litres of plasma to chemically synthesized proteins. Proteomics 2004; 4:2125-2151.
-
(2004)
Proteomics
, vol.4
, pp. 2125-2151
-
-
Rose, K.1
Bougeleret, L.2
Baussant, T.3
-
27
-
-
6344221680
-
Implications of new proteomics strategies for biology and medicine
-
Domon B, Broder S. Implications of new proteomics strategies for biology and medicine. J Proteome Res 2004; 3:253-260.
-
(2004)
J Proteome Res
, vol.3
, pp. 253-260
-
-
Domon, B.1
Broder, S.2
-
28
-
-
13444258243
-
Using protein-DNA chimears to detect and count small numbers of molecules
-
Burbulis I, Yamaguchi K, Gordon A, et al. Using protein-DNA chimears to detect and count small numbers of molecules. Nat Methods 2005; 2:31-37. ••This paper describes the intein-dependent, ultrasensitive, amplified detection of a wide range of biomolecules including peptides. It shows how the lack of a polymerase chain reaction-like amplification reaction in proteomics could possibly be circumvented and how one might cope better with the huge dynamic range in proteomes.
-
(2005)
Nat Methods
, vol.2
, pp. 31-37
-
-
Burbulis, I.1
Yamaguchi, K.2
Gordon, A.3
-
30
-
-
0041358802
-
Prefractionation techniques in proteome analysis
-
Righetti PG, Castagna A, Herbert BR, et al. Prefractionation techniques in proteome analysis. Proteomics 2003; 3:1397-1407.
-
(2003)
Proteomics
, vol.3
, pp. 1397-1407
-
-
Righetti, P.G.1
Castagna, A.2
Herbert, B.R.3
-
31
-
-
28844440466
-
Advances in 2D gel techniques
-
Görg A. Advances in 2D gel techniques. Trends Biotechnol 2004; 19:3-6.
-
(2004)
Trends Biotechnol
, vol.19
, pp. 3-6
-
-
Görg, A.1
-
32
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters DA, Washburn MP, Yates JR. An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 2001; 73:5683-5690.
-
(2001)
Anal Chem
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates, J.R.3
-
33
-
-
0942284538
-
New methods for proteome analysis: Multidimensional chromatography and mass spectrometry
-
Washburn MP, Yates JR. New methods for proteome analysis: multidimensional chromatography and mass spectrometry. Trends Biotechnol 2001; 19:27-30.
-
(2001)
Trends Biotechnol
, vol.19
, pp. 27-30
-
-
Washburn, M.P.1
Yates, J.R.2
-
34
-
-
0037337308
-
The application of mass spectrometry to membrane proteomics
-
Wu CC, Yates JR III. The application of mass spectrometry to membrane proteomics. Nat Biotechnol 2003; 21:262-267.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 262-267
-
-
Wu, C.C.1
Yates III, J.R.2
-
35
-
-
0031855865
-
Recent developments in preparative free flow isoelectric focusing
-
Weber G, Bocek P. Recent developments in preparative free flow isoelectric focusing. Electrophoresis 1998; 19:1649-1653.
-
(1998)
Electrophoresis
, vol.19
, pp. 1649-1653
-
-
Weber, G.1
Bocek, P.2
-
36
-
-
0037262179
-
Protein fractionation in a multi-compartment device using Off-Gel isoelectric focussing
-
Michel PE, Reymond F, Arnaud IL, et al. Protein fractionation in a multi-compartment device using Off-Gel isoelectric focussing. Electrophoresis 2004; 24:3-11.
-
(2004)
Electrophoresis
, vol.24
, pp. 3-11
-
-
Michel, P.E.1
Reymond, F.2
Arnaud, I.L.3
-
37
-
-
29144480261
-
Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides
-
Heller M, Ye M, Michel PE, et al. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides. J Proteome Res 2005; 4:2273-2282.
-
(2005)
J Proteome Res
, vol.4
, pp. 2273-2282
-
-
Heller, M.1
Ye, M.2
Michel, P.E.3
-
38
-
-
0000178042
-
Micro-electrospray mass spectrometry: Ultra-highsensitivity analysis of peptides and proteins
-
Emmett MR, Caprioli RM. Micro-electrospray mass spectrometry: ultra-highsensitivity analysis of peptides and proteins. J Am Soc Mass Spectrom 1994; 5:605-613.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 605-613
-
-
Emmett, M.R.1
Caprioli, R.M.2
-
40
-
-
0036747350
-
Approaching complete peroxisome characterization by gas-phase fractionation
-
Yi EC, Marelli M, Lee H, et al. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis 2002; 23:3205-3216.
-
(2002)
Electrophoresis
, vol.23
, pp. 3205-3216
-
-
Yi, E.C.1
Marelli, M.2
Lee, H.3
-
41
-
-
3543121341
-
Quantification in proteomics through stable isotope coding: A review
-
Julka S, Regnier F. Quantification in proteomics through stable isotope coding: a review. J Proteome Res 2004; 3:350-363.
-
(2004)
J Proteome Res
, vol.3
, pp. 350-363
-
-
Julka, S.1
Regnier, F.2
-
42
-
-
2442685767
-
Development of an LC-MALDI method for the analysis of protein complexes
-
Zhen Y, Xu N, Richardson B, et al. Development of an LC-MALDI method for the analysis of protein complexes. J Am Soc Mass Spectrom 2004; 15:803-822.
-
(2004)
J Am Soc Mass Spectrom
, vol.15
, pp. 803-822
-
-
Zhen, Y.1
Xu, N.2
Richardson, B.3
-
44
-
-
27744563093
-
State-of-the-art in phosphoproteomics
-
Reinders J, Sickmann A. State-of-the-art in phosphoproteomics. Proteomics 2005; 5:4052-4061. •A comprehensive review of protein phosphorylation analysis at the proteome scale.
-
(2005)
Proteomics
, vol.5
, pp. 4052-4061
-
-
Reinders, J.1
Sickmann, A.2
-
45
-
-
11444263845
-
Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry
-
Nuhse TS, Stensballe A, Jensen ON, Peck SC. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Mol Cell Proteomics 2003; 2:1234-1243.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 1234-1243
-
-
Nuhse, T.S.1
Stensballe, A.2
Jensen, O.N.3
Peck, S.C.4
-
46
-
-
3242688830
-
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide
-
Pinkse MWH, Uitto PM, Hilhorst MJ, et al. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide. Anal Chem 2004; 76:3935-3943.
-
(2004)
Anal Chem
, vol.76
, pp. 3935-3943
-
-
Pinkse, M.W.H.1
Uitto, P.M.2
Hilhorst, M.J.3
-
47
-
-
4344574540
-
Large-scale characterization of HeLa cell nuclear phosphoproteins
-
U S A
-
Beausoleil SA, Jedrychowski M, Schwartz D, et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci U S A 2004; 101:12130-12135.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 12130-12135
-
-
Beausoleil, S.A.1
Jedrychowski, M.2
Schwartz, D.3
-
48
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler A, Olsen JV, Mohammed S, et al. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol Cell Proteomics 2005; 4:310-327. •A study of the dynamics of protein phosphorylation combining stable-isotope labelling with amino acids in cell culture, IMAC and Fourier-transform-mass spectrometry.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
-
49
-
-
0037524357
-
O-GlcNAc turns twenty: Functional implications for post-translational modification of nuclear and cytosolic proteins with a sugar
-
Wells L, Hart GW. O-GlcNAc turns twenty: functional implications for post-translational modification of nuclear and cytosolic proteins with a sugar. FEBS Lett 2003; 546:154-158.
-
(2003)
FEBS Lett
, vol.546
, pp. 154-158
-
-
Wells, L.1
Hart, G.W.2
-
50
-
-
0026522617
-
Immobilized lectin columns: Useful tools for the fractionation and structural analysis of oligosaccharides
-
Kobata A, Endo T. Immobilized lectin columns: useful tools for the fractionation and structural analysis of oligosaccharides. J Chromatogr 1992; 597:111-122.
-
(1992)
J Chromatogr
, vol.597
, pp. 111-122
-
-
Kobata, A.1
Endo, T.2
-
51
-
-
0029691097
-
Lectin affinity chromatography
-
West I, Goldring O. Lectin affinity chromatography. Methods Mol Biol 1996; 59:177-185.
-
(1996)
Methods Mol Biol
, vol.59
, pp. 177-185
-
-
West, I.1
Goldring, O.2
-
52
-
-
0023134980
-
m-Aminophenylboronate affinity ligands distinguish between nonenzymically glycosylated proteins and glycoproteins
-
Gould BJ, Hall PM. m-Aminophenylboronate affinity ligands distinguish between nonenzymically glycosylated proteins and glycoproteins. Clin Chim Acta 1987; 163:225-230.
-
(1987)
Clin Chim Acta
, vol.163
, pp. 225-230
-
-
Gould, B.J.1
Hall, P.M.2
-
53
-
-
0023956447
-
Nonenzymatic glycosylation of low-density lipoprotein. Results of an affinity chromatography method
-
Jack CM, Sheridan B, Kennedy L, Stout RW. Nonenzymatic glycosylation of low-density lipoprotein. Results of an affinity chromatography method. Diabetologia 1988; 31:126-127.
-
(1988)
Diabetologia
, vol.31
, pp. 126-127
-
-
Jack, C.M.1
Sheridan, B.2
Kennedy, L.3
Stout, R.W.4
-
54
-
-
0027462384
-
Selective identification and differentiation of N- And O-linked oligosaccharides in glycoproteins by liquid chromatography-mass spectrometry
-
Carr SA, Huddleston MJ, Bean MF. Selective identification and differentiation of N- and O-linked oligosaccharides in glycoproteins by liquid chromatography-mass spectrometry. Protein Sci 1993; 2:183-196.
-
(1993)
Protein Sci
, vol.2
, pp. 183-196
-
-
Carr, S.A.1
Huddleston, M.J.2
Bean, M.F.3
-
55
-
-
0027586797
-
Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: Methods for selective detection of glycopeptides in protein digests
-
Huddleston MJ, Bean MF, Carr SA. Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: methods for selective detection of glycopeptides in protein digests. Anal Chem 1993; 65:877-884.
-
(1993)
Anal Chem
, vol.65
, pp. 877-884
-
-
Huddleston, M.J.1
Bean, M.F.2
Carr, S.A.3
-
56
-
-
0034133274
-
Electron capture dissociation for structural characterization of multiply charged protein cations
-
Zubarev RA, Horn DM, Fridriksson EK, et al. Electron capture dissociation for structural characterization of multiply charged protein cations. Anal Chem 2000; 72:563-573.
-
(2000)
Anal Chem
, vol.72
, pp. 563-573
-
-
Zubarev, R.A.1
Horn, D.M.2
Fridriksson, E.K.3
-
58
-
-
27744591857
-
New hyphenated methodologies in high-sensitivity glycoprotein analysis
-
Novotny MV, Mechref Y. New hyphenated methodologies in high-sensitivity glycoprotein analysis. J Sep Sci 2005; 28:1956-1968.
-
(2005)
J Sep Sci
, vol.28
, pp. 1956-1968
-
-
Novotny, M.V.1
Mechref, Y.2
-
59
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
Von Mering C, Krause R, Snel B, et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002; 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
-
60
-
-
0346094408
-
Recent developments in the analysis of protein complexes
-
Dziembowski A, Seraphin B. Recent developments in the analysis of protein complexes. FEBS Lett 2004; 556:1-6.
-
(2004)
FEBS Lett
, vol.556
, pp. 1-6
-
-
Dziembowski, A.1
Seraphin, B.2
-
61
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, et al. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 1999; 17:1030-1032.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
-
62
-
-
0037294003
-
Affinity purification mass spectrometry
-
Bauer A, Kuster B. Affinity purification mass spectrometry. Eur J Biochem 2003; 270:570-578.
-
(2003)
Eur J Biochem
, vol.270
, pp. 570-578
-
-
Bauer, A.1
Kuster, B.2
-
63
-
-
0036629196
-
Protein microarrays to detect protein-protein interactions using red and green fluorescent proteins
-
Kukar T, Eckenrode S, Gu Y, et al. Protein microarrays to detect protein-protein interactions using red and green fluorescent proteins. Anal Biochem 2002; 306:50-54.
-
(2002)
Anal Biochem
, vol.306
, pp. 50-54
-
-
Kukar, T.1
Eckenrode, S.2
Gu, Y.3
-
64
-
-
23044521928
-
DNA and protein microarrays and their contributions to proteomics and genomics
-
Ehrat M, Kresbach GM. DNA and protein microarrays and their contributions to proteomics and genomics. Chimia 2001; 55:35-39.
-
(2001)
Chimia
, vol.55
, pp. 35-39
-
-
Ehrat, M.1
Kresbach, G.M.2
-
65
-
-
2442436130
-
Affinity proteomics to explore the human genome
-
Agaton C, Uhlén M. Affinity proteomics to explore the human genome. Mol Cell Proteomics 2003; 2:405-414.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 405-414
-
-
Agaton, C.1
Uhlén, M.2
-
66
-
-
0242523651
-
Signal pathway profiling of prostate cancer using reverse phase protein arrays
-
Grubb RL, Calvert VS, Wulkuhle JD, et al. Signal pathway profiling of prostate cancer using reverse phase protein arrays. Proteomics 2003; 3:2142-2146.
-
(2003)
Proteomics
, vol.3
, pp. 2142-2146
-
-
Grubb, R.L.1
Calvert, V.S.2
Wulkuhle, J.D.3
-
67
-
-
0035848705
-
Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
-
Paweletz CP, Charboneau L, Bichsel VE, et al. Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 2001; 20:1981-1989.
-
(2001)
Oncogene
, vol.20
, pp. 1981-1989
-
-
Paweletz, C.P.1
Charboneau, L.2
Bichsel, V.E.3
-
68
-
-
0942276354
-
Protein and chemical microarrays - Powerful tools for proteomics
-
Xu Q, Lam KS. Protein and chemical microarrays - powerful tools for proteomics. J Biomed Biotechnol 2003; 2003:257-266.
-
(2003)
J Biomed Biotechnol
, vol.2003
, pp. 257-266
-
-
Xu, Q.1
Lam, K.S.2
-
69
-
-
0037307787
-
Chemical proteomics and its application to drug discovery
-
Jeffery DA, Bogyo M. Chemical proteomics and its application to drug discovery. Curr Opin Biotechnol 2003; 14:87-95.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 87-95
-
-
Jeffery, D.A.1
Bogyo, M.2
-
71
-
-
0034095972
-
The current state of two-dimensional electrophoresis with immobilized pH gradients
-
Görg A, Obermaier C, Boguth G, et al. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 2000; 21:1037-1053.
-
(2000)
Electrophoresis
, vol.21
, pp. 1037-1053
-
-
Görg, A.1
Obermaier, C.2
Boguth, G.3
-
73
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi S, Rist B, Gerber S, et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 1999; 17:994-999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.1
Rist, B.2
Gerber, S.3
-
74
-
-
0035499083
-
Fractionation of isotopically labeled peptides in quantitative proteomics
-
Zhang R, Sioma C, Wang S, Regnier F. Fractionation of isotopically labeled peptides in quantitative proteomics. Anal Chem 2001; 73:5142-5149.
-
(2001)
Anal Chem
, vol.73
, pp. 5142-5149
-
-
Zhang, R.1
Sioma, C.2
Wang, S.3
Regnier, F.4
-
75
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han D, Eng J, Zhou H, Aebersold R. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol 2001; 19:946-951.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 946-951
-
-
Han, D.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
76
-
-
23944472666
-
Comprehensive label-free method for the relative quantification of proteins from biological samples
-
Higgs RE, Knierman MD, Gelfanova V, et al. Comprehensive label-free method for the relative quantification of proteins from biological samples. J Proteome Res 2005; 4:1442-1450. •A comprehensive review of label-free techniques for differential, quantitative proteomics.
-
(2005)
J Proteome Res
, vol.4
, pp. 1442-1450
-
-
Higgs, R.E.1
Knierman, M.D.2
Gelfanova, V.3
-
77
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
U S A
-
Gerber SA, Rush J, Stemman O, et al. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci U S A 2003; 100:6940-6945.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
-
78
-
-
0035289178
-
Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology
-
Tonge R, Shaw J, Middleton B, et al. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 2001; 1:377-396.
-
(2001)
Proteomics
, vol.1
, pp. 377-396
-
-
Tonge, R.1
Shaw, J.2
Middleton, B.3
-
79
-
-
0036857488
-
Application of zwitterionic detergents to the solubilization of integral membrane proteins for two-dimensional gel electrophoresis and mass spectrometry
-
Henningsen R, Gale BL, Straub KM, DeNagel DC. Application of zwitterionic detergents to the solubilization of integral membrane proteins for two-dimensional gel electrophoresis and mass spectrometry. Proteomics 2002; 2:1479-1488.
-
(2002)
Proteomics
, vol.2
, pp. 1479-1488
-
-
Henningsen, R.1
Gale, B.L.2
Straub, K.M.3
DeNagel, D.C.4
-
80
-
-
0038561131
-
A method for the comprehensive proteomic analysis of membrane proteins
-
Wu CC, MacCoss MJ, Howell KE, Yates JR. A method for the comprehensive proteomic analysis of membrane proteins. Nat Biotechnol 2003; 21:532-538.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 532-538
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Yates, J.R.4
-
81
-
-
0034855587
-
Large-gel two-dimensional electrophoresis-matrix assisted laser desorption/ionization-time of flight-mass spectrometry: An analytical challenge for studying complex protein mixtures
-
Nordhoff E, Egelhofer V, Giavalisco P, et al. Large-gel two-dimensional electrophoresis-matrix assisted laser desorption/ionization-time of flight-mass spectrometry: an analytical challenge for studying complex protein mixtures. Electrophoresis 2001; 22:2844-2855.
-
(2001)
Electrophoresis
, vol.22
, pp. 2844-2855
-
-
Nordhoff, E.1
Egelhofer, V.2
Giavalisco, P.3
-
82
-
-
0036624537
-
Shotgun proteomics: Tools for the analysis of complex biological systems
-
Wu CC, MacCoss MJ. Shotgun proteomics: tools for the analysis of complex biological systems. Curr Opin Mol Ther 2002; 4:242-250.
-
(2002)
Curr Opin Mol Ther
, vol.4
, pp. 242-250
-
-
Wu, C.C.1
MacCoss, M.J.2
-
83
-
-
0036219327
-
Multidimensional separations for protein/peptide analysis in the postgenomic era
-
Liu H, Lin D, Yates JR. Multidimensional separations for protein/peptide analysis in the postgenomic era. Biotechniques 2002; 32:898-902.
-
(2002)
Biotechniques
, vol.32
, pp. 898-902
-
-
Liu, H.1
Lin, D.2
Yates, J.R.3
-
84
-
-
2142856295
-
Proteome profiling - Pitfalls and progress
-
Haynes PA, Yates JR. Proteome profiling - pitfalls and progress. Yeast 2000; 17:81-87.
-
(2000)
Yeast
, vol.17
, pp. 81-87
-
-
Haynes, P.A.1
Yates, J.R.2
-
85
-
-
0036523809
-
Minimizing resolution of isotopically coded peptides in comparative proteomics
-
Zhang R, Regnier F. Minimizing resolution of isotopically coded peptides in comparative proteomics. J Proteome Res 2002; 1:139-147.
-
(2002)
J Proteome Res
, vol.1
, pp. 139-147
-
-
Zhang, R.1
Regnier, F.2
-
86
-
-
33646725310
-
Combining protein identification and quantification: C-terminal isotope-coded tagging using sulfanilic acid
-
Panchaud A, Guillaume E, Affolter M, et al. Combining protein identification and quantification: C-terminal isotope-coded tagging using sulfanilic acid. Rapid Commun Mass Spectrom 2006; 20:1585-1594. •Method for specific C-terminal protein labelling combining protein identification and quantification.
-
(2006)
Rapid Commun Mass Spectrom
, vol.20
, pp. 1585-1594
-
-
Panchaud, A.1
Guillaume, E.2
Affolter, M.3
-
87
-
-
33646254857
-
Differentially isotope-coded N-terminal protein sulfonation: Combining protein identification and quantification
-
Guillaume E, Panchaud A, Affolter M, et al. Differentially isotope-coded N-terminal protein sulfonation: combining protein identification and quantification. Proteomics 2006; 6:2338-2349.
-
(2006)
Proteomics
, vol.6
, pp. 2338-2349
-
-
Guillaume, E.1
Panchaud, A.2
Affolter, M.3
-
88
-
-
6044226889
-
Differential mass spectrometry: A label-free LC-MS method for finding significant differences in complex peptide and protein mixtures
-
Wiener MC, Sachs JR, Deyanova EG, Yates NA. Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures. Anal Chem 2004; 76:6085-6096.
-
(2004)
Anal Chem
, vol.76
, pp. 6085-6096
-
-
Wiener, M.C.1
Sachs, J.R.2
Deyanova, E.G.3
Yates, N.A.4
-
89
-
-
0036636552
-
A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation
-
Bateman RH, Carruthers R, Hoyes JB, et al. A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation. J Am Soc Mass Spectrom 2002; 13:792-803.
-
(2002)
J Am Soc Mass Spectrom
, vol.13
, pp. 792-803
-
-
Bateman, R.H.1
Carruthers, R.2
Hoyes, J.B.3
-
90
-
-
31344449923
-
A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation
-
Niggeweg R, Kocher T, Gentzel M, et al. A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation. Proteomics 2006; 6:41-53.
-
(2006)
Proteomics
, vol.6
, pp. 41-53
-
-
Niggeweg, R.1
Kocher, T.2
Gentzel, M.3
-
91
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: A virtue of parallel MS acquisition
-
Silva JC, Gorenstein MV, Li GZ, et al. Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition. Mol Cell Proteomics 2006; 5:144-156. ••This paper presents a promising technique for absolute and relative protein quantification in complex mixtures based on the three most intense tryptic peptide signals.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.Z.3
-
92
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
U S A
-
Gerber SA, Rush J, Stemman O, et al. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci U S A 2003; 100:6940-6945.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
-
93
-
-
21744435622
-
Scoring proteomes with proteotypic peptide probes
-
Kuster B, Schirle M, Mallick P, Aebersold R. Scoring proteomes with proteotypic peptide probes. Nat Rev Mol Cell Biol 2005; 6:577-583. •A proteome-scale vision of using peptide standards for absolute protein quantification.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 577-583
-
-
Kuster, B.1
Schirle, M.2
Mallick, P.3
Aebersold, R.4
-
94
-
-
23144442824
-
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
-
Beynon RJ, Doherty MK, Pratt JM, Gaskell SJ. Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat Methods 2005; 2:587-589.
-
(2005)
Nat Methods
, vol.2
, pp. 587-589
-
-
Beynon, R.J.1
Doherty, M.K.2
Pratt, J.M.3
Gaskell, S.J.4
-
95
-
-
3242730298
-
Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags
-
Lu Y, Bottari P, Turecek F, et al. Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags. Anal Chem 2004; 76:4104-4111.
-
(2004)
Anal Chem
, vol.76
, pp. 4104-4111
-
-
Lu, Y.1
Bottari, P.2
Turecek, F.3
-
96
-
-
3042742112
-
Absolute quantitation of proteins by a combination of acid hydrolysis and matrix-assisted laser desorption/ionization mass spectrometry
-
Mirgorodskaya OA, Korner R, Novikov A, Roepstorff P. Absolute quantitation of proteins by a combination of acid hydrolysis and matrix-assisted laser desorption/ionization mass spectrometry. Anal Chem 2004; 76:3569-3575.
-
(2004)
Anal Chem
, vol.76
, pp. 3569-3575
-
-
Mirgorodskaya, O.A.1
Korner, R.2
Novikov, A.3
Roepstorff, P.4
-
97
-
-
3242730228
-
A method for gene expression analysis by oligonucleotide arrays from minute biological materials
-
Ji W, Zhou W, Gregg K, et al. A method for gene expression analysis by oligonucleotide arrays from minute biological materials. Anal Biochem 2004; 331:329-339.
-
(2004)
Anal Biochem
, vol.331
, pp. 329-339
-
-
Ji, W.1
Zhou, W.2
Gregg, K.3
-
98
-
-
0344739963
-
Assessment of two methods for handling blood in collection tubes with RNA stabilizing agent for surveillance of gene expression profiles with high density microarrays
-
Thach DC, Lin B, Walter E, et al. Assessment of two methods for handling blood in collection tubes with RNA stabilizing agent for surveillance of gene expression profiles with high density microarrays. J Immunol Methods 2003; 283:269-279.
-
(2003)
J Immunol Methods
, vol.283
, pp. 269-279
-
-
Thach, D.C.1
Lin, B.2
Walter, E.3
-
99
-
-
25144455887
-
Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers
-
Eady JJ, Wortley GM, Wormstone YM, et al. Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers. Physiol Genomics 2005; 22:402-411. ••The first attempt to characterize the bandwidth of the healthy immune status in humans.
-
(2005)
Physiol Genomics
, vol.22
, pp. 402-411
-
-
Eady, J.J.1
Wortley, G.M.2
Wormstone, Y.M.3
|