Large-scale characterization of HeLa cell nuclear phosphoproteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 33, 2004, Pages 12130-12135

  Beausoleil, Sean A ^a   Jedrychowski, Mark ^a   Schwartz, Daniel ^a   Elias, Joshua E ^a   Villén, Judit ^a   Li, Jiaxu ^a   Cohn, Martin A ^a   Cantley, Lewis C ^a   Gygi, Steven P ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Mass spectrometry; Phosphorylation; Strong cation exchange chromatography

Indexed keywords

NUCLEAR PROTEIN; PHOSPHOPROTEIN; PHOSPHOTRANSFERASE;

ARTICLE; CELL LYSATE; CELL NUCLEUS; ENZYME SUBSTRATE COMPLEX; HELA CELL; HUMAN; HUMAN CELL; ION EXCHANGE CHROMATOGRAPHY; MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MOTIF; PROTEIN PHOSPHORYLATION; SIGNAL TRANSDUCTION; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; BINDING SITES; CELL NUCLEUS; CHROMATOGRAPHY, ION EXCHANGE; COMPUTATIONAL BIOLOGY; HELA CELLS; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PHOSPHOPROTEINS; PHOSPHORYLATION; SERINE; THREONINE; TRYPSIN;

EID: 4344574540     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0404720101     Document Type: Article

References (34)

1. Aebersold, R. & Goodlett, D. R. (2001) Chem. Rev. 101, 269-295.
2. McLachlin, D. T. & Chait, B. T. (2001) Curr. Opin. Chem. Biol. 5, 591-602.
3. Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J., Ross, M. M., Shabanomitz, J., Hunt, D. F. & White, F. M. (2002) Nat. Biotechnol. 20, 301-305.
4. Peng, J., Schwartz, D., Elias, J. E., Thoreen, C. C., Cheng, D., Marsischky, G., Roelofs, J., Finley, D. & Gygi, S. P. (2003) Nat. Biotechnol. 21, 921-926.
5. Nuhse, T. S., Stensballe, A., Jensen, O. N. & Peck, S. C. (2003) Mol. Cell Proteomics 2, 1234-1243.
6. Ficarro, S., Chertihin, O., Westbrook, V. A., White, F., Jayes, F., Kalab, P., Marto, J. A., Shabanowitz, J., Herr, J. C., Hunt, D. F. & Visconti, P. E. (2003) J. Biol. Chem. 278, 11579-11589.
7. McLachlin, D. T. & Chait, B. T. (2003) Anal. Chem. 75, 6826-6836.
8. Zhou, H., Watts, J. D. & Aebersold, R. (2001) Nat. Biotechnol. 19, 375-378.
9. Oda, Y., Nagasu, T. & Chait, B. T. (2001) Nat. Biotechnol. 19, 379-382.
10. Steen, H., Kuster, B., Fernandez, M., Pandey, A. & Mann, M. (2001) Anal. Chem. 73, 1440-1448.
11. Shou, W., Verma, R., Annan, R. S., Huddleston, M. J., Chen, S. L., Carr, S. A. & Deshaies, R. J. (2002) Methods Enzymol. 351, 279-296.
12. Annan, R. S., Huddleston, M. J., Verma, R., Deshaies, R. J. & Carr, S. A. (2001) Anal. Chem. 73, 393-404.
13. Schlosser, A., Pipkorn, R., Bossemeyer, D. & Lehmann, W. D. (2001), Anal. Chem. 73, 170-176.
14. De Corte, V., Demol, H., Goethals, M., Van Damme, J., Gettemans, J. & Vandekerckhove, J. (1999) Protein Sci. 8, 234-241.
15. Mann, M., Ong, S. E., Gronborg, M., Steen, H., Jensen, O. N. & Pandey, A. (2002) Trends Biotechnol. 20, 261-268.
16. Gronborg, M., Kristiansen, T. Z., Stensballe, A., Andersen, J. S., Ohara, O., Mann, M., Jensen, O. N. & Pandey, A. (2002) Mol. Cell Proteomics 1, 517-527.
17. Washburn, M. P., Wolters, D. & Yates, J. R. (2001) Nat. Biotechnol. 19, 242-247.
18. Dignam, J. D., Lebovitz, R. M. & Roeder, R. G. (1983) Nucleic Acids Res. 11, 1475-1489.
19. Shevchenko, A., Wilm, M., Vorm, O. & Mann, M. (1996) Anal. Chem. 68, 850-858.
20. Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J. & Gygi, S. P. (2003) J. Proteome Res. 2, 43-50.
21. Rappsilber, J., Ishihama, Y. & Mann, M. (2003) Anal. Chem. 75, 663-670.
22. Peng, J. & Gygi, S. P. (2001) J. Mass Spectrom. 36, 1083-1091.
23. Eng, J., McCormack, A. L. & Yates, J. R. (1994) J. Am. Soc. Mass Spectrom. 5, 976-989.
24. Alpert, A. J. & Andrews, P. C. (1988) J. Chromatogr. 443, 85-96.
25. Manning, B. D. & Cantley, L. C. (2002) Sci. STKE 2002, PE49.
26. Dhanasekaran, N. & Premkumar Reddy, E. (1998) Oncogene 17, 1447-1455.
27. Obenauer, J. C., Cantley, L. C. & Yaffe, M. B. (2003) Nucleic Acids Res. 31, 3635-3641.
28. O'Neill, T., Dwyer, A. J., Ziv, Y., Chan, D. W., Lees-Miller, S. P., Abraham, R. H., Lai, J. H., Hill, D., Shiloh, Y., Cantley, L. C. & Rathbun, G. A. (2000) J. Biol. Chem. 275, 22719-22727.
29. Peri, S., Navarro, J. D., Amanchy, R., Kristiansen, T. Z., Jonnalagadda, C. K., et al. (2003) Genome Res. 13, 2363-2371.
30. Songyang, Z., Lu, K. P., Kwon, Y. T., Tsai, L. H., Filhol, O., Cochet, C., Brickey, D. A., Soderling, T. R., Bartleson, C., Graves, D. J., et al. (1996) Mol. Cell. Biol. 16, 6486-6493.
31. Meggio, F. & Pinna, L. A. (2003) Faseb J. 17, 349-368.
32. Schwartz, J. C., Senko, M. W. & Syka, J. E. (2002) J. Am. Soc. Mass Spectrom 13, 659-669.
33. Oda, Y., Huang, K., Cross, F. R., Cowburn, D. & Chait, B. T. (1999) Proc. Natl. Acad. Sci. USA 96, 6591-6596.
34. Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A. & Mann, M. (2002) Mol. Cell Proteomics 1, 376-386.