Proteinaceous xylanase inhibitors: Structure, function and evolution

Current Enzyme Inhibition

Volumn 2, Issue 1, 2006, Pages 29-35

  Juge, Nathalie ^a,b   Delcour, Jan A ^c  

^a AIX MARSEILLE UNIVERSITY   (France)

^b INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^c UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

Adaptive evolution; Protein interaction; Proteinaceous inhibitors; Xylanases

Indexed keywords

ALPHA ARABINOFURANOSIDASE; AMYLASE ISOENZYME; ARABINOXYLAN; ASPARTIC PROTEINASE; BETA GLUCAN HYDROLASE; CHITINASE; ENZYME INHIBITOR; GLYCOSIDASE; TRITICUM AESTIVUM XYLANASE INHIBITOR; UNCLASSIFIED DRUG; XYLAN 1,4 BETA XYLOSIDASE; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLANASE INHIBITING PROTEIN;

ASPERGILLUS NIDULANS; BARLEY; COMPETITIVE INHIBITION; COMPLEX FORMATION; CRYSTAL STRUCTURE; ENZYMATIC DEGRADATION; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYME KINETICS; ENZYME SPECIFICITY; ENZYME STRUCTURE; IN VITRO STUDY; MAIZE; MOLECULAR EVOLUTION; NEOCALLIMASTIX; NONHUMAN; NUCLEOTIDE SEQUENCE; PENICILLIUM; PLANT CELL; PLANT DEFENSE; PLANT PATHOGEN INTERACTION; PROTEIN DEGRADATION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; REVIEW; RICE; RYE; SEQUENCE HOMOLOGY; WHEAT;

BACTERIA (MICROORGANISMS); HORDEUM VULGARE SUBSP. VULGARE; SECALE CEREALE; TRITICUM AESTIVUM; ZEA MAYS;

EID: 33746126893     PISSN: 15734080     EISSN: None     Source Type: Journal    
DOI: 10.2174/157340806775473562     Document Type: Review

References (78)

1. Coutinho, P.M.; Henrissat, B. In Recent Advances in Carbohydrate Bioengineering; Gilbert, H.J., Davies, G.J., Henrissat, B.; Svensson, B. Eds; The Royal Society, Cambridge, 1999, pp. 3-12.
2. Kulkarni, N.; Shendye, A., Rao, M. FEMS Microbiol. Rev., 1999, 23, 411-456.
3. Jeffries, T.W. Curr. Opin. Biotechnol., 1996, 7, 337-342.
4. Biely, P.; Vrsanska, M.; Tenkanen, M.; Kluepfel, D. J. Biotechnol., 1997, 57, 151-66.
5. Sabini, E.; Sulzenbacher, G.; Dauter, M.; Dauter, Z.; Jorgensen, P. L.; Schulein, M.; Dupont, C.; Davies, G.J.; Wilson, K.S. Chem. Biol., 1999, 6, 483-92.
6. Ducros, V.; Charnock, S.J.; Derewenda, U.; Derewenda, Z.S.; Dauter, Z.; Dupont, C.; Shareck, F.; Morosoli, R.; Kluepfel, D.; Davies, G.J. J. Biol. Chem., 2000, 275, 23020-23026.
7. Davies, G.; Henrissat, B. Structure, 1995, 3, 853-859.
8. Simpson, D.J.; Fincher, G.B.; Huang, A.H.C.; Cameron-Mills, V. J. Cereal. Sci., 2002, 37, 111-127.
9. Bedford, M.R.; Schulze, H. Nutr. Res. Rev., 1998, 11, 91-114.
10. Courtin, C.M.; Roelants, A.; Delcour, J.A. J. Agric. Food Chem., 1999, 47, 1870-1877.
11. Courtin, C.M.; Delcour, J.A. J. Cereal. Sci., 2002, 35, 225-243.
12. Ingelbrecht, J.A.; Moers, K.; Abécassis, J.; Rouau X.; Delcour, J.A. Cereal. Chem., 2001, 78, 721-729.
13. Christophersen, C.; Andersen, E.; Jacobsen, T.S.; Wagner, P. Starch/ Stärke, 1997, 1, 5-12.
14. Debyser, W.; Derdelinckx, G.; Delcour, J.A. J. Cereal. Sci., 1997, 26, 67-74.
15. Suurnäkki, A.; Tenkanen, M.; Buchert, J.; Viikari, L. Adv. Biochem. Eng./Biotechnol., 1997, 57, 261-287.
16. Christov, L.P.; Szakacs, G.; Balakrishnan, H. Process Biochem., 1999, 34, 511-517.
17. Debyser, K.; Derdelinckx, G.; Delcour, J.A. J. Am. Soc. Brew. Chem., 1997, 55, 153-156.
18. Rouau, X.; Surget, A. J. Cereal Sci., 1998, 28, 63-70.
19. Sorensen, J.F.; Kragh, K.M.; Sibbesen, O.; Delcour, J.; Goesaert, H.; Svensson, B.; Tahir, T.A.; Brufau, J.; Perez-Vendrell, A.M.; Bellincampi, D.; D'Ovidio, R.; Camardella, L.; Giovane, A.; Bonnin, E.; Juge, N. Biochim. Biophys. Acta, 2004, 1696, 275-287.
20. Gebruers, K.; Brijs, K.; Courtin, C.M.; Fierens, K.; Goesaert, H.; Raedschelders, G.; Robben, J.; Sorensen, J.F.; Van Campenhout, S.; Delcour, J.A. Biochim. Biophys. Acta, 2004, 1696, 213-221.
21. Juge, N.; Payan, F.; Williamson, G. Biochim. Biophys. Acta, 2004, 1696, 203-211.
22. Goesaert, H.; Elliott, G.; Kroon, P.A.; Gebruers, K.; Courtin, C.M.; Robben, J.; Delcour, J.A.; Juge, N. Biochim. Biophys. Acta, 2004, 1696, 193-202.
23. Debyser, W.; Peumans, W.J.; Van Damme, E.J.M.; Delcour, J.A. J. Cereal Sci., 1999, 30, 39-43.
24. Debyser, W.; Delcour, J.A. Patent application WO 98/49278, 1998.
25. Debyser, W.; Peumans, W.J.; Van Damme, E.J.M.; Delcour, A.J. J. Cereal Sci., 1999, 30, 39-43.
26. Sibbesen, O.; Sørensen, J.F. International Patent application WO 00/ 39289, 2000.
27. Gebruers, K.; Debyser, W.; Goesaert, H.; Proost, P.; Van Damme, J.; Delcour, J.A. Biochem. J., 2001, 353, 239-244.
28. Gebruers, K.; Goesaert, H.; Brijs, K.; Courtin, C.M.; Delcour, J.A. J. Enzyme Inhib. Med. Chem., 2002, 17, 61-68.
29. Gebruers, K.; Brijs, K.; Courtin, C.M.; Goesaert, H.; Proost, P.; Van Damme, J.; Delcour, J.A J. Cereal Sci., 2002, 36, 367-375.
30. McLauchlan, W.R.; Garcia-Conesa, M.T.; Williamson, G.; Roza, M.; Ravestein, P.; Maat, J. Biochem. J, 1999, 338, 441-446.
31. Hessing, M.; Happe, R.P. European Patent Application EP 0979830, 2000.
32. Elliot, G.O.; McLauchlan, W.R.; Williamson, G.; Kroon, P.A. J. Cereal Sci., 2003, 37, 187-194.
33. Goesaert, H.; Gebruers, K.; Brijs, K.; Courtin, C.M.; Delcour, J.A. J. Agric. Food Chem, 2003, 51, 3770-3775.
34. Goesaert, H.; Gebruers, K.; Brijs, K.; Courtin, C.M.; Delcour, J.A. J. Cereal Sci., 2003, 38, 317-324.
35. Goesaert, H.; Debyser, W.; Gebruers, K.; Proost, P.; Van Damme, J.; Delcour, J.A. Cereal Chem, 2001, 78, 453-457.
36. Goesaert, H.; Gebruers, K.; Courtin, C.M.; Proost, P. Van Damme, J.; Delcour, J.A. J. Cereal Sci., 2002, 36, 177-185.
37. Flatman, R.; McLauchlan, W.R.; Juge, N.; Furniss, C.; Berrin, J.-G.; Hughes, R.K.; Manzanares, P.; Ladbury, J.E.; O'Brien, R.; Williamson, G. Biochem. J, 2002, 365, 773-781.
38. Elliott, G.O.; Hughes, R.K.; Juge, N.; Kroon, P.A.; Williamson, G. FEBS Lett., 2002, 519, 66-70.
39. Payan, F.; Flatman, R.; Porciero, S.; Williamson, G.; Juge, N.; Roussel, A. Biochem. J., 2003, 372, 399-405.
40. MacCabe, A.P.; Fernandez-Espinar, M.T.; de Graaff, L.H.; Visser, J.; Ramon, D. Gene, 1996, 175, 29-33.
41. Belshaw, N.J.; Haigh, N.P.; Fish, N.M.; Archer, D.B.; Alcocer, M.J. Appl. Microbiol. Biotechnol., 2002, 60, 455-60.
42. Payan, F.; Leone, P.; Furniss, C.; Tahir, T.A.; Durand, A.; Porciero, S.; Manzanares, P.; Williamson, G.; Gilbert, H.; Juge, N.; Roussel, A. J. Biol. Chem., 2004, 279, 36029-36027.
43. Törrönen, A.; Harkki, A.; Rouvinen, J. EMBO J., 1994, 13, 2493-2501.
44. Fierens, K.; Brijs, K.; Courtin, C.M.; Gebruers, K;. Goesaert, H.; Raeschelders, G.; Robben, J. Van Campenhout, S.; Volckaert, G.; Delcour, J.A. FEBS Lett., 2003, 540, 259-263.
45. Satoh, S.; Sturm, A.; Fujii, T.; Chrispeels, M.J. Planta, 1992, 188, 432-438.
46. Qin, Q.; Bergmann, C.W.; Rose, J.K.C.; Saladie, M.; Kumar Kolli, V.S.; Albertsheim, B.; Darvill A.G.; York, W.S. Plant J., 2003, 34, 327-338.
47. Sansen, S.; Verboven, C.; De Ranter, C.J.; Gebruers, K.; Brijs, K.; Courtin, C.M.; Delcour, J.A.; Rabijns, A. Acta Crystallogr. D. Biol. Crystallogr., 2003, 59, 744-746.
48. Sansen, S.; De Ranter, C.J.; Gebruers, K.; Brijs, K.; Courtin, C.M.; Delcour, J.A.; Rabijns, A. J. Biol. Chem., 2004, 279, 36022-36028.
49. Yang, J.; Quail, J.W. Acta Crystallogr. D. Biol. Crystallogr., 1999, 55, 625-630.
50. Krengle, U.; Dijkstra, B.W. J. Mol. Biol., 1996, 263, 70-78.
51. Henrissat, B. In Chitin and Chitinases; Jolles, P.; Muzzarelli, R.A.A., Eds; Birkhauser Verlag: Basel Switzerland, 1999, pp. 137-156.
52. Tews, I.; Terwisscha van Scheltinga, A.C.; Perrakis, A.; Wilson, K.S.; Dijkstra, B.W. J. Am. Chem. Soc., 1997, 119, 7954-7959.
53. Hennig, M.; Jansonius, J.N.; Terwisscha van Scheltinga, A.C.; Dijkstra, B.W.; Schlesier, B. J. Mol. Biol., 1995, 254, 237-246.
54. Hennig, M.; Pfeffer-Hennig, S.; Dauter, Z.; Wilson, K. Acta Crystallogr. D. Biol. Crystallogr., 1995, 51, 177-189.
55. Terwisscha van Scheltinga, A.C.; Hennig, M. Dijkstra, B.W. J. Mol. Biol., 1996, 262, 243-257.
56. Furniss, C.C.S.M.; Belshaw, N.J.; Alcocer, M.J.; Williamson, G.; Elliott, G.O.; Gebruers, K.; Haigh, N.P.; Fish, N.M.; Kroon, P.A. Biochim. Biophys. Acta, 2002, 1598, 24-29.
57. Tahir, T.A.; Berrin, J.G.; Flatman, R.; Roussel, A.; Roepstorff, P.; Williamson G.; Juge, N. J. Biol. Chem., 2002, 277, 44035-44043.
58. Brutus, A.; Villard, C.; Durand, A.; Tahir, T.; Furniss, C.; Puigserver, A.; Juge, N.; Giardina, T. Biochim. Biophys. Acta, 2004, 1701, 121-128.
59. Furniss, C.S.M.; Williamson, G.; Kroon, P.A. J. Sci. Food Agric., 2005, 85 (4) in press.
60. Sidhu, P.K.; Fincher, G.B. Plant Physiol., 1999, 121, 685.
61. Banik, M.; Garrett, T.P.J.; Fincher, G.B. Plant Mol. Biol., 1996, 31, 1163-1172.
62. Banik, M.; Li, C.D.; Langridge, P.; Fincher, G.B. Mol. Gen. Genet., 1997, 253, 599-608.
63. Sancho, A.I.; Faulds, C.B.; Svensson, B.; Bartolome, B.; Williamson, G.; Juge, N. Biochim. Biophys. Acta, 2003, 1650, 136-144.
64. Vallée, F.; Kadziola, A.; Bourne, Y.; Juy, M.; Rodenburg, K.W.; Svensson, B.; Haser, R. Structure, 1998, 6, 649-659.
65. Gottschalk, M.; Schuster, E.; Sprössler, B. US patent No. 5,306,633, 1994.
66. Gebruers, K. PhD dissertation, Katholieke Universiteit Leuven, Belgium, 2002.
67. Goesaert, H. PhD dissertation, Katholieke Universiteit Leuven, Belgium, 2002.
68. Sørensen, J.F. In Recent Advances in Enzymes in Grain Processing; Courtin, C.M.; Veraverbeke, W.S.; Delcour, J.A., Eds, Laboratory of Food Chemistry, K.U. Leuven: Leuven, Belgium, 2003, pp. 241-245.
69. Igawa, T.; Ochiai-Fukuda, T.; Takahashi-Ando, N.; Ohsato, S.; Shibata, T.; Yamaguchi, I; Kimura, M. Plant Cell Physiol., 2004, 45, 1347-1360.
70. Bellincampi, D.; Camardella, L.; Delcour, J.A.; Desseaux, V.; D'Ovidio, R.; Durand, A.; Elliott, G.; Gebruers, K.; Giovane, A.; Juge, N.; Sorensen, J.F.; Svensson, B.; Vairo, D. Biochim. Biophys. Acta, 2004, 1696, 265-274.
71. Neuhaus, J.M.; Fritig, B.; Linthorst, H.J.M.; Meins, F.; Mikkelsen, J.D.; Ryals, J. Plant Mol. Biol. Rep., 1996, 14, 102-104.
72. Bishop, J.G.; Dean, A.M.; Mitchell-Olds, T. Proc. Natl. Acad. Sci. USA, 2000, 97, 5322-5327.
73. Coutinho, P.M.; Stam, M.; Blanc, E.; Henrissat, B. Trends Plant Sci., 2003, 8, 563-565.
74. Green, J.A.; Xie, S.; Roberts, M. Pepsin Rev. Reprod., 1998, 3, 62-69.
75. D'Ovidio, R.; Mattei, B.; Roberti, S.; Bellincampi, D. Biochim. Biophys. Acta, 2004, 1696, 237-244.
76. Dash, C.; Rao, M. J. Biol. Chem., 2001, 276, 2487-2493.
77. Dash, C.; Ahmad, A.; Nath, D.; Rao, M. Antimicrob. Agents Chemother., 2001, 45, 2008-2017.
78. Dash, C.; Vathipadiekal, V.; George, S.P.; Rao, M. J. Biol. Chem., 2002, 277, 17978-17986.