Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 10, 2000, Pages 5322-5327

  Bishop, J G ^a,b   Dean, A M ^c   Mitchell Olds, T ^a  

^a MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^b WASHINGTON STATE UNIVERSITY   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHITINASE;

ADAPTATION; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; ENZYME STRUCTURE; GENETIC SELECTION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ARABIDOPSIS; BRASSICA; BRASSICACEAE; CHITINASE; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PROTEIN CONFORMATION;

ARABIS; BRASSICACEAE; DICOTYLEDONEAE; EMBRYOPHYTA; FUNGI; PRIMATES;

EID: 0034625046     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.10.5322     Document Type: Article

References (53)

1. Thompson, J. N. & Burdon, J. J. (1992) Nature (London) 360, 121-125.
2. Simms, E. L. (1996) BioScience 46, 136-145.
3. Caicedo, A. L., Schaal, B. A. & Kunkel, B. N. (1999) Proc. Natl. Acad. Sci. USA 96, 302-306.
4. Stahl, E. A., Dwyer, G., Mauricio, R., Kreitman, M. & Bergelson, J. (1999) Nature (London) 400, 667-671.
5. Meyers, B. C., Shen, K. A., Rohani, P., Gaut, B. S. & Michelmore, R. W. (1998) Plant Cell 11, 1833-1846.
6. Wang, G. L., Ruan, D., Song, W. Y., Sideris, S., Chen, L., Pi, L. Y., Zhang, S., Zhang, Z., Fauquet, C., Gaut, B. S., et al. (1998) Plant Cell 10, 765-779.
7. McDowell, J. M., Dhandaydam, M., Long, T. A., Aarts, M. G. M., Goff, S., Holub, E. B. & Dangl, J. L. (1998) Plant Cell 10, 1861-1874.
8. Frey, M., Chomet, P., Glawischnig, E., Stettner, C., Gruen, S., Winklmair, A., Eisenriech, W., Bacher, A., Meeley, R. B., Briggs, S. P., et al. (1997) Science 277, 696-699.
9. Bowyer, P., Clarke, B. R., Lunness, P., Daniels, M. J. & Osbourn, A. E. (1995) Science 267, 371-374.
10. Glazebrook, J., Zooki, M., Mert, F., Kagan, I., Rogers, E. E., Crute, I. R., Holub, E. B., Hammerschmits, R. & Ausubel, F. M. (1997) Genetics 146, 381-392.
11. Sevan, M., Bancroft, I., Bent, E., Love, K., Goodman, H., Dean, C., Bergkamp, R., Kirksse, W., Van Staveren, M., Stiekema, W., et al. (1998) Nature (London) 391, 485-488.
12. Ham, K., Wu, S., Darvill, A. G. & Albersheim, P. (1997) Plant J. 11, 169-179.
13. Golding, G. B. & Dean, A. M. (1998) Mol. Biol. Evol. 15, 355-369.
14. Samac, D. A., Hironaka, C. M., Yallaly, P. E. & Shah, D. M. (1990) Plant Physiol. 93, 907-914.
15. Collinge, D. B., Kragh, K. M., Mikkelsen, J. D., Nielsen, K. K., Rasmussen, U. & Vad, K. (1993) Plant J. 3, 31-40.
16. Broglie, K., Chet, I., Holliday, M., Cressman, R., Biddle, P., Knowlton, S., Mauvais, C. J. & Broglie, R. (1991) Science 254, 1194-1197.
17. Jach, G., Goerhardt, B., Mundy, J., Logemann, J., Pinsdorf, E., Lean, R., Schell, J. & Maas, C. (1995) Plant J. 8, 97-109.
18. Grison, R., Grezes-Besset, B., Schneider, M., Lucante, N., Olsen, L., Leguay, J.-J. & Toppan, A. (1996) Nat. Biotechnol. 4, 643-656.
19. Brunner, F., Stintzi, A., Fritig, B. & Legrand, M. (1998) Plant J. 14, 225-234.
20. Verburg, J. G. & Huynh, Q. K. (1991) Plant Physiol. 95, 450-455.
21. Neuhaus, J.-M., Ahl-Goy, P., Hinz, U., Flores, U. & Meins, F. (1991) Plant Mol. Biol. 16, 151-161.
22. Broekhaert, W. F., Van Parajs, J., Allen, A. K. & Peumans, W. J. (1988) Physiol. Mol. Plant Pathol. 33, 319-331.
23. Mauch, F., Mauch-Mani, B. & Boller, T. (1988) Plant Physiol. 88, 936-942.
24. Hodge, A., Gooday, G. W. & Alexander, I. J. (1996) Phytochemistry 41, 77-84.
25. Sakuda, S., Isogai, A., Matsumoto, S. & Suzuki, A. (1986) Tetrahedron Lett. 27, 2475-2478.
26. Koch, M., Bishop, J. G. & Mitchell-Olds, T. (1999) Plant Biol. 1, 529-537.
27. Felsenstein, J. (1996) PHYLIP Phylogeny Inference Package (Univ. of Washington, Seattle), Version 3.5.
28. Adachi, J. & Hasegawa, M. (1996) MOLPHY (Computer Science Monographs, Institute of Statistical Mathematics, Tokyo).
29. Li, W.-H. (1993) J. Mol. Evol. 36, 96-99.
30. Wolfe, K. (1997) LI93 (Trinity College, Dublin).
31. Zhang, J., Kumar, S. & Nei, M. (1997) Mol. Biol. Evol. 14, 1335-1338.
32. Messier, W. & Stewart, C.-B. (1997) Nature (London) 385, 151-154.
33. Wright, F. (1990) Gene 87, 23-29.
34. Lloyd, A. T. & Sharp, P. M. (1992) J. Hered. 83, 239-240.
35. Nielsen, R. & Yang, Z. (1998) Genetics 148, 929-936.
36. Yang, Z. (1999) PAML (University College, London).
37. Yang, Z. & Nielsen, R. (1998) J. Mol. Evol. 46, 409-418.
38. Yang, Z. (1998) Mol. Biol. Evol. 15, 568-573.
39. Hart, P. J., Pfluger, H. D., Monzingo, A. F., Hollis, T. & Robertus, J. D. (1995) J. Mol. Biol. 248, 402-413.
40. Brameld, K. A. & Goddard, W. A., III (1998) Proc. Natl. Acad. Sci. USA 95, 4276-4281.
41. Song, H., Inaka, K., Maenaka, K. & Matsushima, M. (1994) J. Mol. Biol. 244, 522-540.
42. Terwisschavan Scheltinga, A. C., Armand, S., Kalk, K. H., Isogai, A., Henrissat, B. & Dijkstra, B. W. (1995) Biochemistry 34, 15619-15623.
43. Hughes, A. L. & Nei, M. (1988) Nature (London) 335, 167-170.
44. Endo, T., Ikeo, K. & Gojobori, T. (1996) Mol. Biol. Evol. 13, 685-690.
45. Richman, A. D. & Kohn, J. R. (1999) Proc. Natl. Acad. Sci. USA 96, 168-172.
46. Monzingo, A. F., Marcotte, E. M., Hart, P. J. & Robertus, J. D. (1996) Nat. Struct. Biol. 3, 133-140.
47. Schock, H. B., Garsky, V. M. & Kuo, L. C. (1996) J. Biol. Chem. 271, 31957-31963.
48. Collins, J. R., Burk, S. K. & Erikson, J. W. (1995) Nat. Struct. Biol. 2, 334-338.
49. Van Pelt-Heerschap, H. & Sietsma, J. H. (1990) Mycol. Res. 94, 979-984.
50. Stotz, H. U., Bishop, J. G., Bergmann, C. W., Koch, M., Albersheim, P., Darvill, A. G. & Labavitch, J. M. (2000) Mol. Physiol. Plant Pathol. 56, 117-118.
51. Iseli-Gamboni, B., Boller, T. & Neuhaus, J.-M. (1998) Plant Sci. 134, 45-51.
52. Allona, I., Collada, C., Casado, R., Paz-Ares, J. & Aragoncillo, C. (1996) Plant Mol. Biol. 32, 1171-1176.
53. Swofford, D. L. (1998) PAUP*, Phylogenetic Analysis Using Parsimony (Sinauer, Sunderland, MA), Version 4.