Specific characterization of substrate and inhibitor binding sites of a glycosyl hydrolase family 11 xylanase from Aspergillus niger

Journal of Biological Chemistry

Volumn 277, Issue 46, 2002, Pages 44035-44043

  Tahir, Tariq A ^a   Berrin, Jean Guy ^a,b   Flatman, Ruth ^a   Roussel, Alain ^c   Roepstorff, Peter ^d   Williamson, Gary ^a,e   Juge, Nathalie ^a,b  

^a INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^b AIX MARSEILLE UNIVERSITY   (France)

^c Centre National de la Recherche Scientifique   (France)

^d UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^e NESTLÉ RESEARCH CENTER   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; ELECTROPHORESIS; ENZYME KINETICS; ENZYMES; HYDROLYSIS; MUTAGENESIS; SURFACE PLASMON RESONANCE; TITRATION;

ELECTROPHORETIC TITRATION;

BIOCHEMISTRY;

GLYCOSIDASE; INHIBITOR PROTEIN; TRYPTOPHAN; TYROSINE; UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLANASE INHIBITOR PROTEIN I;

ARTICLE; ASPERGILLUS NIGER; BINDING SITE; CIRCULAR DICHROISM; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYME KINETICS; ENZYME SPECIFICITY; ENZYME STABILITY; ENZYME STRUCTURE; HYDROLYSIS; NONHUMAN; PICHIA PASTORIS; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS; SURFACE PLASMON RESONANCE; TITRIMETRY; WHEAT;

AMINO ACID SEQUENCE; ASPARAGINE; ASPERGILLUS NIGER; BINDING SITES; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CIRCULAR DICHROISM; CLONING, MOLECULAR; DNA MUTATIONAL ANALYSIS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HYDROGEN-ION CONCENTRATION; IMMUNOBLOTTING; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; N-GLYCOSYL HYDROLASES; PICHIA; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY; SURFACE PLASMON RESONANCE; TIME FACTORS; TRYPTOPHAN; TYROSINE; XYLAN ENDO-1,3-BETA-XYLOSIDASE; XYLOSIDASES;

ASPERGILLUS; ASPERGILLUS NIGER; PICHIA; PICHIA PASTORIS; TRITICUM AESTIVUM;

EID: 0037113937     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M205657200     Document Type: Article

References (63)

1. Biely, P. (1985) Trends Biotechnol, 3, 286-290
2. Biely, P. (1993) in Hemicellulose and hemicellulases (Coughlan M. P., Hazlewood G. P., eds) pp. 29-51, Portland Press, London
3. Henrissat, B. (1991) Biochem. J. 280, 309-316
4. Henrissat, B., and Bairoch, A. (1993) Biochem. J. 293, 781-788
5. Henrissat, B., and Bairoch, A. (1996) Biochem. J. 316, 695-696
6. Jeffries, T. W. (1996) Curr. Opin. Biotechnol. 7, 337-342
7. Biely, P., Vrsansaka, M., Tenkanen, M., and Kluepfel, D. (1997) J. Biotechnol. 57, 151-166
8. Sapag, A., Wouters, J., Lambert, C., de Ioannes, P., Eyzaguirre, J., and Depiereux, E. (2002) J. Biotechnol. 95, 109-131
9. McCarter, J. D., and Withers, S. G. (1994) Curr. Opin. Struct. Biol. 4, 885-892
10. Davies, G., and Henrissat, B. (1995) Structure 3, 853-859
11. Vocadlo, D. J., Davies, G. J., Laine, R., and Withers, S. G. (2001) Nature 412, 835-838
12. Withers, S. G. (1995) in Carbohydrate Engineering (Petersen, S. B., Svensson, S., and Pedersen, S., eds) pp. 97-113, Elsevier Science Publishers B. V., Amsterdam
13. Wakarchuk, W. W., Campbell, R. L., Sung, W. L., Davoodi, J., and Yaguchi, M. (1994) Protein Sci. 3, 467-475
14. Joshi, M. D., Sidhu, G., Nielsen, J. E., Brayer, G. D., Withers, S. G., and McIntosh, L. P. (2001) Biochemistry 40, 10115-10139
15. Harris, G. W., Pickersgill, R. W., Connerton, I., Debeire, P., Touzel, J. P., Breton, C., and Perez, S. (1997) Proteins 29, 77-86
16. Sabini, E., Sulzenbacher, G., Dauter, M., Dauter, Z., Jorgensen, P. L., Schulein, M., Dupont, C., Davies, G. J., and Wilson, K. S. (1999) Chem. Biol. 6, 483-492
17. Sabini, E., Wilson, K. S., Danielsen, S., Schulein, M., and Davies, G. J. (2001) Acta Crystallogr. Sect. D 57, 1344-1347
18. McCarthy, A. A., Morris, D. D., Bergquist, P. L., and Baker, E. N. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 1367-1375
19. Wouters, J., Georis, J., Engher, D., Vandenhaute, J., Dusart, J., Frere, J. M., Depiereux, E., and Charlier, P. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1813-1819
20. Campbell, R., Rose, D., Wakarchuk, W., To, R., Sung, W., and Yaguchi, M. (1993) in Proceedings of the 2nd TRICEL Symposium on Trichoderma reesei Cellulases and Other Hydrolases (Suominen, P., and Reinikainen, T., eds) pp. 63-72, Foundation for Biotechnical and Industrial Fermentation Research, Espoo, Finland
21. Törrönen, A., Harkki, A., and Rouvinen, J. (1994) EMBO J. 13, 2493-2501
22. Törrönen, A., and Rouvinen, J. (1995) Biochemistry 34, 847-856
23. Muilu, J., Törrönen, A., Perakyla, M., and Rouvinen, J. (1998) Proteins 31, 434-444
24. Krengle, U., and Dijkstra, B. W. (1996) J. Mol. Biol. 263, 70-78
25. Fushinobu, S., Ito, K., Konno, M., Wakagi, T., and Matsuzawa, H. (1998) Protein Eng. 11, 1121-1128
26. Gruber, K., Klintschar, G., Hayn, M., Schlacher, A., Steiner, W., and Kratky, C. (1998) Biochemistry 37, 13475-13485
27. Kumar, P. R., Eswaramoorthy, S., Vithayathil, P. J., and Viswamitra, M. A. (2000) J. Mol. Biol. 295, 581-593
28. Törrönen, A., and Rouvinen, J. (1997) J. Biotechnol. 57, 137-149
29. Havukainen, R., Törrönen, A., Laitinen, T., and Rouvinen, J. (1996) Biochemistry 35, 9617-9624
30. Sidhu, G., Withers, S. G., Nguyen, N. T., McIntosh, L. P., Ziser, L., and Brayer, G. D. (1999) Biochemistry 38, 5346-5354
31. Davies, G. J., Wilson, K., and Henrissat, B. (1997) Biochem. J. 321, 557-559
32. Hessing, J. G. M., van Rotterdam, C., Verbakel, J. M. A., Roza, M., Maat, J., van Gorcom, R. F. M., and van den Hondel, C. A. M. J. J. (1994) Curr. Genet. 26, 228-232
33. Berrin, J. G., Williamson, G., Puigserver, A., Chaix, J. C., McLauchlan, W. R., and Juge, N. (2000) Protein Expression Purif. 19, 179-187
34. Hessing, J. G. M., van Gorcom, R. F. M., Verbakel, J. M. A., Roza, M., and Maat, J. (December 26, 1991) PCT International Patent Application WO/91/19782
35. Maat, J., Roza, M., Verbakel, J., Stam, H., Santos da Silva, M. J., Bosse, M., Egmond, M. R., Hagemans, M. L. D., Gorcom, R. F. M. V., Hessing, J. G. M., van der Hondel, C. A. M. J. J., and Rotterdam, C. V. (1992) in Xylans and Xylanases (Visser, J., Beldman, G., Kusters-van Somerson, M. A., and Voragen, A. G. J., eds) pp. 349-360, Elsevier Science Publishers B.V., Amsterdam
36. Debyser, W., Peumans, W. J., Van Damme, E. J. M., and Delcour, J. A. (1999) J. Cereal Sci. 30, 39-43
37. Christophersen, C., Andersen, E., Jakobsen, T. S., and Wagner, P. (1997) Starch/Staerke 49, 5-12
38. Bedford, M. R., and Classen, H. L. (1992) in Xylan and Xylanases (Visser, J., Beldman, G., Kusters-van Somerson, M. A., and Voragen, A. G. J., eds) pp. 361-370, Elsevier Science Publishers B. V., Amsterdam
39. Graham, H., and Inborr, J. (1992) in Xylans and Xylanases (Visser J., Beldman G., Kusters-van Someren, M. A., and Voragen, A. G. J., eds) pp. 535-538, Elsevier Science Publishers B. V., Amsterdam
40. Debyser, W., Derdelinckx, G., and Delcour, J. A. (1997) J. Am. Soc. Brew. Chem. 55, 153-156
41. Debyser, W., and Delcour, J. A. (November 5, 1998) WO9849278
42. Rouau, X., and Surget, A. (1998) J. Cereal Sci. 28, 63-70
43. McLauchlan, W. R., Garcia-Conesa, M. T., Williamson, G., Roza, M., Ravenstein, P., and Maat, J. (1999) Biochem. J. 338, 441-446
44. Hessing, M., and Happe, R. P. (February 16, 2000) EP 0979830 A1
45. McLauchlan, W. R., Flatman, R. H., Sancho, A. I., Kakuta, J., Faulds, C. B., Elliot, G. O., Kroon, P. A., Furniss, C. S. M., Juge, N., Ravestein, P., and Williamson, G. (2000) in Proceedings of the 2nd European Symposium on Enzymes in Grain Processing (Simoinen, T., and Tenkanen, M., eds) pp. 55-61, Technical Research Center of Finland (VTT), Helsinki, Finland
46. Gebruers, K., Debyser, W., Goesaert, H., Proost, P., Van Damme, J., and Delcour, J. A. (2001) Biochem. J. 353, 239-244
47. Goesaert, H., Debyser, W., Gebruers, K., Proost, P., Van Damme, J., and Delcour, J. A. (2001) Cereal Chem. 78, 453-457
48. Flatman, R., McLauchlan, W. R., Juge, N., Furniss, C. S., Berrin, J. G., Hughes, R. K., Manzanares, P., Ladbury, J. E., O'Brien, R., and Williamson, G. (2002) Biochem. J. 365, 773-781
49. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene 77, 51-59
50. Cregg, J. M., Barringer, J., Hessler, A. Y., and Madden, K. R. (1985) Mol. Cell. Biol. 5, 3376-3385
51. Hinnen, A., Hicks, J. B., and Fink, G. R. (1978) Proc. Natl. Acad. Sci. U. S. A. 75, 1929-1933
52. Juge, N., Williamson, G., Puigserver, A., Cummings, N., J., Connerton, I. F., and Faulds, C. B. (2001) FEMS Yeast Res. 1, 127-132
53. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
54. Bailey, M. J., Biely, P., and Poutanen, K. (1992) J. Biotechnol. 23, 257-270
55. Gobom, J., Nordhoff, E., Mirgorodskaya, E., Ekman, R., and Roepstorff, P. (1999) J. Mass Spectrom. 34, 105-116
56. Jonsson, U., Fagerstam, L., Ivarsson, B., Johnsson, B., Karlsson, R., Lundh, K., Lofas, S., Persson, B., Roos, H., and Ronnberg, I. (1991) BioTechniques 11, 620-627
57. Johnsson, B., Lofas, S., and Lindquist, G. (1991) Anal. Biochem. 198, 268-277
58. Wilkinson, A. J., Fersht, A. R., Blow, D. M., and Winter, G. (1983) Biochemistry 22, 3581-3586
59. Granzow, R., and Reed, R. (1992) Bio/Technology 10, 390-393
60. Schuster, S. C., Swanson, R. V., Alex, L. A., Bourret, R. B., and Simon, M. I. (1993) Nature 365, 343-347
61. Luttig, M., Pretorius, I. S., and van Zyl, W. H. (1997) Biotechnol. Lett. 19, 411-415
62. Christopher, J. A. (1998) SPOCK Manual, Center for Macromolecular Design, Texas A&M University, College Station, TX
63. Roussel, A., and Cambillau, C. (1991) in Silicon Graphics Geometry Partners Directory, pp. 86, Silicon Graphics, Mountain View, CA