메뉴 건너뛰기




Volumn 262, Issue 2, 1996, Pages 243-257

The 1.8 Å resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18

Author keywords

cis peptide; Crystal contacts; Glycosyl hydrolase; TIM barrel; X ray structure comparison

Indexed keywords

CHITINASE; GLYCOSIDASE; LYSOZYME; BETA N ACETYLHEXOSAMINIDASE; CONCANAVALIN B PROTEIN, CANAVALIA ENSIFORMIS; GLOBULIN; GLYCOSYLCERAMIDASE; HEVAMINE; N ACETYL BETA GLUCOSAMINIDASE; NARBONIN; VEGETABLE PROTEIN;

EID: 0030595119     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0510     Document Type: Article
Times cited : (168)

References (41)
  • 1
    • 0028086144 scopus 로고
    • The complete DNA sequence of Autographa californica nuclear polyhedrosis virus
    • Ayres, M. D., Howard, S. C., Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology, 202, 586-605.
    • (1994) Virology , vol.202 , pp. 586-605
    • Ayres, M.D.1    Howard, S.C.2    Kuzio, J.3    Lopez-Ferber, M.4    Possee, R.D.5
  • 2
    • 0000268861 scopus 로고
    • Calculation of an OMIT map
    • Bhat, T. N. (1988). Calculation of an OMIT map. J. Appl. Crystallog. 21, 279-281.
    • (1988) J. Appl. Crystallog. , vol.21 , pp. 279-281
    • Bhat, T.N.1
  • 3
    • 0028799896 scopus 로고
    • Cloning of a cDNA encoding chitotriosidase, a human chitinase produced by macrophages
    • Boot, R. G., Renkema, G. H., Strijland, A., van Zonneveld, A. J. & Aerts, J. M. F. G. (1995). Cloning of a cDNA encoding chitotriosidase, a human chitinase produced by macrophages. J. Biol. Chem. 270, 26252-26256.
    • (1995) J. Biol. Chem. , vol.270 , pp. 26252-26256
    • Boot, R.G.1    Renkema, G.H.2    Strijland, A.3    Van Zonneveld, A.J.4    Aerts, J.M.F.G.5
  • 4
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
    • Brünger, A. T. (1992). Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature, 355, 472-475.
    • (1992) Nature , vol.355 , pp. 472-475
    • Brünger, A.T.1
  • 5
    • 0023140814 scopus 로고
    • Crystallographic R factor refinement by molecular dynamics
    • Brünger, A. T., Kuriyan, J. & Karplus, M. (1987). Crystallographic R factor refinement by molecular dynamics. Science, 235, 458-460.
    • (1987) Science , vol.235 , pp. 458-460
    • Brünger, A.T.1    Kuriyan, J.2    Karplus, M.3
  • 6
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, R. A. & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallog. sect. A, 47, 392-400.
    • (1991) Acta Crystallog. Sect. A , vol.47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 7
    • 0025284257 scopus 로고
    • The evolution of α/β barrel enzymes
    • Farber, G. K. & Petsko, G. A. (1990). The evolution of α/β barrel enzymes. Trends Biochem. Sci. 15, 228-234.
    • (1990) Trends Biochem. Sci. , vol.15 , pp. 228-234
    • Farber, G.K.1    Petsko, G.A.2
  • 8
    • 0027471830 scopus 로고
    • Crystal structure of an endochitinase from Hordeum vulgare L. seeds
    • Hart, P. J., Monzingo, A. F., Ready, M. P., Ernst, S. R. & Robertus, J. D. (1993). Crystal structure of an endochitinase from Hordeum vulgare L. seeds. J. Mol. Biol. 229, 189-193.
    • (1993) J. Mol. Biol. , vol.229 , pp. 189-193
    • Hart, P.J.1    Monzingo, A.F.2    Ready, M.P.3    Ernst, S.R.4    Robertus, J.D.5
  • 9
    • 0028845991 scopus 로고
    • Crystal structure of concanavalin B at 1.65 Å resolution. An "inactivated" chitinase from seeds of Canavalia ensiformis
    • Hennig, M., Jansonius, J. N., Terwisscha van Scheltinga, A. C., Dijkstra, B. W. & Schlesier, B. (1995a). Crystal structure of concanavalin B at 1.65 Å resolution. An "inactivated" chitinase from seeds of Canavalia ensiformis. J. Mol. Biol. 254, 237-246.
    • (1995) J. Mol. Biol. , vol.254 , pp. 237-246
    • Hennig, M.1    Jansonius, J.N.2    Terwisscha Van Scheltinga, A.C.3    Dijkstra, B.W.4    Schlesier, B.5
  • 11
    • 0025654530 scopus 로고
    • Weak sequence homologies among chitinases detected by clustering analysis
    • Henrissat, B. (1990). Weak sequence homologies among chitinases detected by clustering analysis. Protein Seq. Data Anal. 3, 523-526.
    • (1990) Protein Seq. Data Anal. , vol.3 , pp. 523-526
    • Henrissat, B.1
  • 12
    • 0027225980 scopus 로고
    • New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat, B. & Bairoch, A. (1993). New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 293, 781-788.
    • (1993) Biochem. J. , vol.293 , pp. 781-788
    • Henrissat, B.1    Bairoch, A.2
  • 13
    • 0028268204 scopus 로고
    • Structural similarity of plant chitinase and lysozymes from animals and phage - An evolutionary connection
    • Holm, L. & Sander, C. (1994). Structural similarity of plant chitinase and lysozymes from animals and phage - an evolutionary connection. FEBS Letters, 340, 129-132.
    • (1994) FEBS Letters , vol.340 , pp. 129-132
    • Holm, L.1    Sander, C.2
  • 15
    • 0025739769 scopus 로고
    • The primary structure of hevamine, an enzyme with lysozyme/chitinase activity from Hevea brasiliensis latex
    • Jekel, P. A., Hartmann, J. B. H. & Beintema, J. J. (1991). The primary structure of hevamine, an enzyme with lysozyme/chitinase activity from Hevea brasiliensis latex. Eur. J. Biochem. 200, 123-130.
    • (1991) Eur. J. Biochem. , vol.200 , pp. 123-130
    • Jekel, P.A.1    Hartmann, J.B.H.2    Beintema, J.J.3
  • 16
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjelgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A, 47, 110-119.
    • (1991) Acta Crystallog. Sect. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3    Kjelgaard, M.4
  • 17
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 18
    • 0001581521 scopus 로고
    • Biological function of 'pathogenesis-related' proteins: Four PR proteins of tobacco have 1,3-β-glucanase activity
    • Kauffmann, S., Legrand, M., Geoffroy, P. & Fritig, B. (1987). Biological function of 'pathogenesis-related' proteins: four PR proteins of tobacco have 1,3-β-glucanase activity. EMBO J. 6, 3209-3212.
    • (1987) EMBO J. , vol.6 , pp. 3209-3212
    • Kauffmann, S.1    Legrand, M.2    Geoffroy, P.3    Fritig, B.4
  • 19
    • 0027668880 scopus 로고
    • Sequence of a cDNA and expression of the gene encoding epidermal and gut chitinases of Manduca sexta
    • Kramer, K. J., Corpuz, L., Choi, H. K. & Muthukrishnan, S. (1993). Sequence of a cDNA and expression of the gene encoding epidermal and gut chitinases of Manduca sexta. Insect Biochem. Mol. Biol. 23, 691-701.
    • (1993) Insect Biochem. Mol. Biol. , vol.23 , pp. 691-701
    • Kramer, K.J.1    Corpuz, L.2    Choi, H.K.3    Muthukrishnan, S.4
  • 20
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P. J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24, 946-950.
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 21
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallog. 26, 283-291.
    • (1993) J. Appl. Crystallog. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 22
    • 0001480645 scopus 로고
    • Biological function of pathogenesis-related proteins: Four tobacco pathogenesis-related proteins are chitinases
    • Legrand, M., Kauffmann, S., Geoffroy, P. & Fritig, B. (1987). Biological function of pathogenesis-related proteins: four tobacco pathogenesis-related proteins are chitinases. Proc. Natl Acad. Sci. USA, 84, 6750-6754.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 6750-6754
    • Legrand, M.1    Kauffmann, S.2    Geoffroy, P.3    Fritig, B.4
  • 23
    • 0001099937 scopus 로고
    • Traitement statistique des erreurs dans la determination des structures crystalline
    • Luzzati, V. (1952). Traitement statistique des erreurs dans la determination des structures crystalline. Acta Crystallog. 5, 802-810.
    • (1952) Acta Crystallog. , vol.5 , pp. 802-810
    • Luzzati, V.1
  • 25
    • 0029379651 scopus 로고
    • Lectins as plant defense proteins
    • Peumans, W. J. & van Damme, E. J. M. (1995). Lectins as plant defense proteins. Plant Physiol. 109, 347-352.
    • (1995) Plant Physiol. , vol.109 , pp. 347-352
    • Peumans, W.J.1    Van Damme, E.J.M.2
  • 27
    • 0029644724 scopus 로고
    • Crystal structure of endo-β-N-acetylglucosaminidase H at 1.9 Å resolution: Active-site geometry and substrate recognition
    • Rao, V. H., Guan, C. & van Roey, P. (1995). Crystal structure of endo-β-N-acetylglucosaminidase H at 1.9 Å resolution: active-site geometry and substrate recognition. Structure, 3, 449-457.
    • (1995) Structure , vol.3 , pp. 449-457
    • Rao, V.H.1    Guan, C.2    Van Roey, P.3
  • 28
    • 84944812409 scopus 로고
    • Improved fourier coefficients for maps using phases from partial structures with errors
    • Read, R. J. (1986). Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallog. sect. A, 42, 140-149.
    • (1986) Acta Crystallog. Sect. A , vol.42 , pp. 140-149
    • Read, R.J.1
  • 29
    • 0029137828 scopus 로고
    • Protein motifs. 4. The structure and evolution of α/β barrel proteins
    • Reardon, D. & Farber, G. K. (1995). Protein motifs. 4. The structure and evolution of α/β barrel proteins. FASEB J. 9, 497-503.
    • (1995) FASEB J. , vol.9 , pp. 497-503
    • Reardon, D.1    Farber, G.K.2
  • 30
    • 0020392369 scopus 로고
    • Serratia marcescens chitinase: One-step purification and use for the determination of chitin
    • Roberts, R. L. & Cabib, E. (1982). Serratia marcescens chitinase: one-step purification and use for the determination of chitin. Anal. Biochem. 127, 402-412.
    • (1982) Anal. Biochem. , vol.127 , pp. 402-412
    • Roberts, R.L.1    Cabib, E.2
  • 31
    • 50549158514 scopus 로고
    • Localized acquired resistance to plant virus infection in hypersensitive hosts
    • Ross, A. F. (1961). Localized acquired resistance to plant virus infection in hypersensitive hosts. Virology, 14, 329-339.
    • (1961) Virology , vol.14 , pp. 329-339
    • Ross, A.F.1
  • 32
    • 0025270501 scopus 로고
    • Crystallization of hevamine, an enzyme with lysozyme/chitinase activity from Hevea brasiliensis latex
    • Rozeboom, H. J., Budiani, A., Beintema, J. J. & Dijkstra, B. W. (1990). Crystallization of hevamine, an enzyme with lysozyme/chitinase activity from Hevea brasiliensis latex. J. Mol. Biol. 212, 441-443.
    • (1990) J. Mol. Biol. , vol.212 , pp. 441-443
    • Rozeboom, H.J.1    Budiani, A.2    Beintema, J.J.3    Dijkstra, B.W.4
  • 33
    • 0000842166 scopus 로고    scopus 로고
    • Sequence analysis of concanavalin B from Canavalia ensiformis reveals homology to chitinases
    • Schlesier, B., Nong, V. H., Horstmann, C. & Hennig, M. (1996). Sequence analysis of concanavalin B from Canavalia ensiformis reveals homology to chitinases. J. Plant Physiol. 147, 665-674.
    • (1996) J. Plant Physiol. , vol.147 , pp. 665-674
    • Schlesier, B.1    Nong, V.H.2    Horstmann, C.3    Hennig, M.4
  • 34
    • 0003090577 scopus 로고
    • The lysozyme of Hevea brasiliensis latex: Isolation, purification, enzyme kinetics and a partial amino-acid sequence
    • Tata, S. J., Beintema, J. J. & Balabaskaran, S. (1983). The lysozyme of Hevea brasiliensis latex: isolation, purification, enzyme kinetics and a partial amino-acid sequence. J. Rubb. Res. Inst. Malaysia, 31, 35-48.
    • (1983) J. Rubb. Res. Inst. Malaysia , vol.31 , pp. 35-48
    • Tata, S.J.1    Beintema, J.J.2    Balabaskaran, S.3
  • 35
    • 0028774705 scopus 로고
    • Crystal structures of hevamine, a plant defence protein with chitinase and lysozyme activity, and its complex with an inhibitor
    • Terwisscha van Scheltinga, A. C., Kalk, K. H., Beintema, J. J. & Dijkstra, B. W. (1994). Crystal structures of hevamine, a plant defence protein with chitinase and lysozyme activity, and its complex with an inhibitor. Structure, 2, 1181-1189.
    • (1994) Structure , vol.2 , pp. 1181-1189
    • Terwisscha Van Scheltinga, A.C.1    Kalk, K.H.2    Beintema, J.J.3    Dijkstra, B.W.4
  • 36
    • 0028828695 scopus 로고
    • Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: Evidence for substrate assisted catalysis
    • Terwisscha van Scheltinga, A. C., Armand, S., Kalk, K. H., Isogai, A., Henrissat, B. & Dijkstra, B. W. (1995). Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis. Biochemistry, 34, 15619-15623.
    • (1995) Biochemistry , vol.34 , pp. 15619-15623
    • Terwisscha Van Scheltinga, A.C.1    Armand, S.2    Kalk, K.H.3    Isogai, A.4    Henrissat, B.5    Dijkstra, B.W.6
  • 37
    • 84913050729 scopus 로고
    • An efficient general-purpose least-squares refinement program for macromolecular structures
    • Tronrud, D. E., Ten Eyck, L. & Matthews, B. W. (1987). An efficient general-purpose least-squares refinement program for macromolecular structures. Acta Crystallog. sect. A, 43, 489-501.
    • (1987) Acta Crystallog. Sect. A , vol.43 , pp. 489-501
    • Tronrud, D.E.1    Ten Eyck, L.2    Matthews, B.W.3
  • 39
    • 0001376743 scopus 로고
    • Pathogenesis-related proteins
    • van Loon, L. C. (1985). Pathogenesis-related proteins. Plant Mol. Biol. 4, 111-116.
    • (1985) Plant Mol. Biol. , vol.4 , pp. 111-116
    • Van Loon, L.C.1
  • 41
    • 0027216435 scopus 로고
    • Identification of glutamic acid-204 and aspartic acid-200 in chitinase-A1 of Bacillus circulans WL-12 as essential residues for chitinase activity
    • Watanabe, T., Kobori, K., Miyashita, K., Fujii, T., Sakai, H., Uchida, M. & Tanaka, H. (1993). Identification of glutamic acid-204 and aspartic acid-200 in chitinase-A1 of Bacillus circulans WL-12 as essential residues for chitinase activity. J. Biol. Chem. 268, 18567-18572.
    • (1993) J. Biol. Chem. , vol.268 , pp. 18567-18572
    • Watanabe, T.1    Kobori, K.M.K.2    Fujii, T.3    Sakai, H.4    Uchida, M.5    Tanaka, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.