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Volumn 26, Issue 1, 2004, Pages 19-30

Recent progress, developments, and issues in comparative fungal genomics

Author keywords

Bioinformatics; BLAST; Data mining; Fungal genes

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); EUKARYOTA; FUNGI; MYXOGASTRIA; PROKARYOTA;

EID: 3042666911     PISSN: 07060661     EISSN: 17152992     Source Type: Journal    
DOI: 10.1080/07060660409507108     Document Type: Article
Times cited : (8)

References (113)
  • 2
    • 0035195789 scopus 로고    scopus 로고
    • Beyond comparison - antibiotics from genome data?
    • Alekshun, M. N., 2001. Beyond comparison - antibiotics from genome data?. Nat. Biotechnol., 19:1124–1125.
    • (2001) Nat. Biotechnol , vol.19 , pp. 1124-1125
    • Alekshun, M.N.1
  • 4
    • 0037468230 scopus 로고    scopus 로고
    • Sacrifice for the greater good
    • Anonymous. 2003. Sacrifice for the greater good. Nature (London), 421:875
    • (2003) Nature (London) , vol.421 , pp. 875
  • 6
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant, Arabidopsis thaliana
    • Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant, Arabidopsis thaliana. Nature (London), 408:796–815.
    • (2000) Nature (London) , vol.408 , pp. 796-815
  • 8
    • 0037023308 scopus 로고    scopus 로고
    • Opening the door to comparative plant biology
    • Bennetzen, J., 2002. Opening the door to comparative plant biology. Science (Washington, D.C.), 296:60–63.
    • (2002) Science (Washington, D.C.) , vol.296 , pp. 60-63
    • Bennetzen, J.1
  • 9
    • 0028839560 scopus 로고
    • Heterogeneity of genome sizes among natural isolates of Escherichia colia
    • Bergthorsson, U., and Ochman, H., 1995. Heterogeneity of genome sizes among natural isolates of Escherichia colia. J. Bacteriol., 10:5784–5789.
    • (1995) J. Bacteriol , vol.10 , pp. 5784-5789
    • Bergthorsson, U.1    Ochman, H.2
  • 11
    • 0034118874 scopus 로고    scopus 로고
    • Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae
    • Braun, E. L., Halpern, A. L., Nelson, M. A., and Natvig, D. O., 2000. Large-scale comparison of fungal sequence information:mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae. Genome Res., 10:416–430.
    • (2000) Genome Res , vol.10 , pp. 416-430
    • Braun, E.L.1    Halpern, A.L.2    Nelson, M.A.3    Natvig, D.O.4
  • 13
    • 0141607966 scopus 로고    scopus 로고
    • Programmed for success
    • Buckingham, S., 2003. Programmed for success. Nature (London), 425:209–215.
    • (2003) Nature (London) , vol.425 , pp. 209-215
    • Buckingham, S.1
  • 15
    • 0024328536 scopus 로고
    • Altering the genome by homologous recombination
    • Capecchi, M. R., 1989. Altering the genome by homologous recombination. Science (Washington, D.C.), 244:1288–1292.
    • (1989) Science (Washington, D.C.) , vol.244 , pp. 1288-1292
    • Capecchi, M.R.1
  • 17
  • 19
    • 0031831222 scopus 로고    scopus 로고
    • Supernumerary chromosomes in filamentous fungi
    • Covert, S. F., 1998. Supernumerary chromosomes in filamentous fungi. Curr. Genet., 33:311–319.
    • (1998) Curr. Genet , vol.33 , pp. 311-319
    • Covert, S.F.1
  • 20
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • da Silva, A. C., Ferro, J. A., Reinach, F. C., Farah, C. S., Furlan, L. R., Quaggio, R. B., 2002. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), 417:459–463.
    • (2002) Nature (London) , vol.417 , pp. 459-463
    • da Silva, A.C.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5    Quaggio, R.B.6
  • 21
    • 0041358614 scopus 로고    scopus 로고
    • Discovery of un characterized cellular systems by genome-wide analyses of functional linkages
    • Date, S. V., and Marcotte, E. M., 2003. Discovery of un characterized cellular systems by genome-wide analyses of functional linkages. Nat. Biotechnol., 21:1055–1062.
    • (2003) Nat. Biotechnol , vol.21 , pp. 1055-1062
    • Date, S.V.1    Marcotte, E.M.2
  • 22
    • 0037351682 scopus 로고    scopus 로고
    • Schizo saccharomyces pombe essential genes: a pilot study
    • Decottignies, A., Sanchez-Perez, I., and Nurse, P., 2003. Schizo saccharomyces pombe essential genes:a pilot study. Genome Res., 13:399–406.
    • (2003) Genome Res , vol.13 , pp. 399-406
    • Decottignies, A.1    Sanchez-Perez, I.2    Nurse, P.3
  • 24
    • 0037468171 scopus 로고    scopus 로고
    • Draft guidelines ease restrictions on use of genome sequence data
    • Dennis, C., 2003. Draft guidelines ease restrictions on use of genome sequence data. Nature (London), 421:877–878.
    • (2003) Nature (London) , vol.421 , pp. 877-878
    • Dennis, C.1
  • 25
    • 0030797897 scopus 로고    scopus 로고
    • A meiotically reproducible chromosome length polymorphism in the ascomycete fungus Ophiostoma ulmi (sensu lato)
    • Dewar, K., Bousquet, J., Dufour, J., and Bernier, L., 1997. A meiotically reproducible chromosome length polymorphism in the ascomycete fungus Ophiostoma ulmi (sensu lato). Mol. Gen. Genet., 255:38–44.
    • (1997) Mol. Gen. Genet , vol.255 , pp. 38-44
    • Dewar, K.1    Bousquet, J.2    Dufour, J.3    Bernier, L.4
  • 26
    • 0033955274 scopus 로고    scopus 로고
    • Evolution of genes and taxa: a primer
    • Doyle, J. J., and Gaut, B. S., 2000. Evolution of genes and taxa:a primer. Plant Mol. Biol., 42:1–23.
    • (2000) Plant Mol. Biol , vol.42 , pp. 1-23
    • Doyle, J.J.1    Gaut, B.S.2
  • 27
    • 0034118874 scopus 로고    scopus 로고
    • Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae
    • Edward, L., Braun, E. L., Halpern, A. L., Nelson, M. A., and Natvig, D. O., 2000. Large-scale comparison of fungal sequence information:mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae. Genome Res., 10:416–430.
    • (2000) Genome Res , vol.10 , pp. 416-430
    • Edward, L.1    Braun, E.L.2    Halpern, A.L.3    Nelson, M.A.4    Natvig, D.O.5
  • 28
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C., 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature (London), 391:806–811.
    • (1998) Nature (London) , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 29
    • 0036789811 scopus 로고    scopus 로고
    • Identifying essential genes in fungal pathogens of humans
    • Firon, A., and d'Enfert, C., 2002. Identifying essential genes in fungal pathogens of humans. Trends Microbiol., 10:456–462.
    • (2002) Trends Microbiol , vol.10 , pp. 456-462
    • Firon, A.1    d'Enfert, C.2
  • 30
    • 0034178257 scopus 로고    scopus 로고
    • Homology, a personal view on some of the problems
    • Fitch, W. M., 2000. Homology, a personal view on some of the problems. Trends Genet., 16:227–231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 33
    • 0036889014 scopus 로고    scopus 로고
    • The value of complete microbial genome sequencing (You get what you pay for)
    • Fraser, C. M., Eisen, J. A., Nelson, K. E., Paulsen, I. T., and Salzberg, S. L., 2002. The value of complete microbial genome sequencing (You get what you pay for). J. Bacteriol., 184:6403–6405.
    • (2002) J. Bacteriol , vol.184 , pp. 6403-6405
    • Fraser, C.M.1    Eisen, J.A.2    Nelson, K.E.3    Paulsen, I.T.4    Salzberg, S.L.5
  • 34
    • 0041864035 scopus 로고    scopus 로고
    • Genome sequences from the sea
    • Fuhrman, J., 2003. Genome sequences from the sea. Nature (London), 424:1001–1002.
    • (2003) Nature (London) , vol.424 , pp. 1001-1002
    • Fuhrman, J.1
  • 36
    • 0142231860 scopus 로고    scopus 로고
    • The unseen genome: gems among the junk
    • Gibbs, W. W., 2003. The unseen genome:gems among the junk. Sci. Am., 289 (5):46–53.
    • (2003) Sci. Am , vol.289 , Issue.5 , pp. 46-53
    • Gibbs, W.W.1
  • 38
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu, Z., Steinmetz, L. M., Gu, X., Scharfe, C., Davis, R. W., and Li, W.-H., 2003. Role of duplicate genes in genetic robustness against null mutations. Nature (London), 421:63–66.
    • (2003) Nature (London) , vol.421 , pp. 63-66
    • Gu, Z.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.-H.6
  • 39
    • 0037008177 scopus 로고    scopus 로고
    • Beyond Arabidopsis genome: opportunities for comparative genomics
    • Hall, A. E., Fiebig, A., and Preuss, D., 2002. Beyond Arabidopsis genome:opportunities for comparative genomics. Plant Physiol. (Bethesda), 129:1439–1447.
    • (2002) Plant Physiol. (Bethesda) , vol.129 , pp. 1439-1447
    • Hall, A.E.1    Fiebig, A.2    Preuss, D.3
  • 41
    • 0038742815 scopus 로고    scopus 로고
    • Fungal genomics beyond Saccharomyces cerevisiae
    • Hofmann, G., McIntyre, M., and Nielsen, J., 2003. Fungal genomics beyond Saccharomyces cerevisiae. Curr. Opin. Biotechnol., 14:226–231.
    • (2003) Curr. Opin. Biotechnol , vol.14 , pp. 226-231
    • Hofmann, G.1    McIntyre, M.2    Nielsen, J.3
  • 42
    • 0037783949 scopus 로고    scopus 로고
    • Distinguishing plant and fungal sequences in ESTs from infected plant tissues
    • Hsiang, T., and Goodwin, P. H., 2003. Distinguishing plant and fungal sequences in ESTs from infected plant tissues. J. Microbiol. Methods, 54:339–351.
    • (2003) J. Microbiol. Methods , vol.54 , pp. 339-351
    • Hsiang, T.1    Goodwin, P.H.2
  • 43
    • 0036790072 scopus 로고    scopus 로고
    • Novel strategies in antifungal lead discovery
    • Jiang, B., Bussey, H., and Roemer, T., 2002. Novel strategies in antifungal lead discovery. Curr. Opin. Microbiol., 5:466–471.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 466-471
    • Jiang, B.1    Bussey, H.2    Roemer, T.3
  • 44
    • 0034139837 scopus 로고    scopus 로고
    • Searching the expressed sequence tag (EST) databases: panning for genes
    • Jongeneel, V., 2001. Searching the expressed sequence tag (EST) databases:panning for genes. Brief. Bioinform., 1:76–92.
    • (2001) Brief. Bioinform , vol.1 , pp. 76-92
    • Jongeneel, V.1
  • 45
  • 47
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E. S., 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature (London), 423:241–254.
    • (2003) Nature (London) , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 48
    • 0033947041 scopus 로고    scopus 로고
    • A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici)
    • Keon, J., Bailey, A., and Hargreaves, J., 2000. A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici). Fungal Genet. Biol., 29:118–133.
    • (2000) Fungal Genet. Biol , vol.29 , pp. 118-133
    • Keon, J.1    Bailey, A.2    Hargreaves, J.3
  • 50
    • 0034625235 scopus 로고    scopus 로고
    • The impact of comparative genomics on our understanding of evolution
    • Koonin, E. V., Aravind, L., and Kondrashov, A. S., 2000. The impact of comparative genomics on our understanding of evolution. Cell, 101:573–576.
    • (2000) Cell , vol.101 , pp. 573-576
    • Koonin, E.V.1    Aravind, L.2    Kondrashov, A.S.3
  • 51
    • 0035991175 scopus 로고    scopus 로고
    • Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum
    • Kruger, W. M., Pritsch, C., Chao, S., and Muehlbauer, G. J., 2002. Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. Mol. Plant-Microbe Interact., 15:445–455.
    • (2002) Mol. Plant-Microbe Interact , vol.15 , pp. 445-455
    • Kruger, W.M.1    Pritsch, C.2    Chao, S.3    Muehlbauer, G.J.4
  • 52
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart, D. J., and Winzeler, E. A., 2000. Genomics, gene expression and DNA arrays. Nature (London), 405:827–836.
    • (2000) Nature (London) , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 53
    • 0036346002 scopus 로고    scopus 로고
    • Genomic approaches to fungal pathogenicity
    • Lorenz, M. C., 2002. Genomic approaches to fungal pathogenicity. Curr. Opin. Microbiol., 5:372–378.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 372-378
    • Lorenz, M.C.1
  • 54
    • 0037960785 scopus 로고    scopus 로고
    • The 0.1% portrait of human history
    • Maher, B. A., 2003. The 0.1% portrait of human history. The Scientist, 17 (13):28–29.
    • (2003) The Scientist , vol.17 , Issue.13 , pp. 28-29
    • Maher, B.A.1
  • 55
    • 0037083705 scopus 로고    scopus 로고
    • DNA sequencer protests being scooped with his own data
    • Marshall, E., 2002. DNA sequencer protests being scooped with his own data. Nature (London), 295:1206–1207.
    • (2002) Nature (London) , vol.295 , pp. 1206-1207
    • Marshall, E.1
  • 57
    • 0004123745 scopus 로고
    • Farnham, Surrey, U.K.: British Crop Protection Council
    • Mellanby, K., 1992. The DDT Story, Farnham, Surrey, U.K.:British Crop Protection Council.
    • (1992) The DDT Story
    • Mellanby, K.1
  • 58
    • 0030765448 scopus 로고    scopus 로고
    • MIPS: a database for protein sequences, homology data and yeast genome information
    • Mewes, H. W., Albermann, K., Heumann, K., Liebl, S., and Pfeiffer, F., 1997a. MIPS:a database for protein sequences, homology data and yeast genome information. Nucl. Acids Res., 25:28–30.
    • (1997) Nucl. Acids Res , vol.25 , pp. 28-30
    • Mewes, H.W.1    Albermann, K.2    Heumann, K.3    Liebl, S.4    Pfeiffer, F.5
  • 60
    • 0036790007 scopus 로고    scopus 로고
    • Microbial genome evolution: sources of variability
    • Mira, A., Klasson, L., and Andersson, S. G. E., 2002. Microbial genome evolution:sources of variability. Curr. Opin. Microbiol., 5:506–512.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 506-512
    • Mira, A.1    Klasson, L.2    Andersson, S.G.E.3
  • 61
    • 0038275922 scopus 로고    scopus 로고
    • The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens
    • Mitchell, T. K., Thon, M. R., Jeong, J.-S., Brown, D., Deng, J., and Dean, R. A., 2003. The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens. New Phytol., 159:53–61.
    • (2003) New Phytol , vol.159 , pp. 53-61
    • Mitchell, T.K.1    Thon, M.R.2    Jeong, J.-S.3    Brown, D.4    Deng, J.5    Dean, R.A.6
  • 62
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature (London), 420:520–562.
    • (2002) Nature (London) , vol.420 , pp. 520-562
  • 63
    • 21144457199 scopus 로고    scopus 로고
    • From sequence to consequence: in silico hypothesis generation and testing
    • Pallen, M., 2002. From sequence to consequence:in silico hypothesis generation and testing. Methods Microbiol., 33:27–48.
    • (2002) Methods Microbiol , vol.33 , pp. 27-48
    • Pallen, M.1
  • 64
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp, B., Pal, C., and Hurst, L. D., 2003. Dosage sensitivity and the evolution of gene families in yeast. Nature (London), 424:194–197.
    • (2003) Nature (London) , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 65
    • 21144438005 scopus 로고    scopus 로고
    • Annotation of microbial genomes
    • Parkhill, J., 2002. Annotation of microbial genomes. Methods Microbiol., 33:3–26.
    • (2002) Methods Microbiol , vol.33 , pp. 3-26
    • Parkhill, J.1
  • 66
    • 0042355274 scopus 로고    scopus 로고
    • Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis, and Bordetella bronchiseptica
    • Parkhill, J., Sebaihia, M., Preston, A., Murphy, L. D., Thomson, N., Harris, D. E., 2003. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis, and Bordetella bronchiseptica. Nat. Genet., 35:32–40.
    • (2003) Nat. Genet , vol.35 , pp. 32-40
    • Parkhill, J.1    Sebaihia, M.2    Preston, A.3    Murphy, L.D.4    Thomson, N.5    Harris, D.E.6
  • 67
    • 0036789782 scopus 로고    scopus 로고
    • The impact of genomics on anti-infectives drug discovery and development
    • Parkinson, T., 2002. The impact of genomics on anti-infectives drug discovery and development. Trends Microbiol., 10:S22–S26.
    • (2002) Trends Microbiol , vol.10 , pp. S22-S26
    • Parkinson, T.1
  • 68
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson, W. R., 1990. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol., 183:63–98.
    • (1990) Methods Enzymol , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 69
    • 0032512799 scopus 로고    scopus 로고
    • Empirical statistical estimates for sequence similarity searches
    • Pearson, W. R., 1998. Empirical statistical estimates for sequence similarity searches. J. Mol. Evol., 276:71–84.
    • (1998) J. Mol. Evol , vol.276 , pp. 71-84
    • Pearson, W.R.1
  • 70
    • 0036007665 scopus 로고    scopus 로고
    • Computational gene finding in plants
    • Pertea, M., and Salzberg, S. L., 2002. Computational gene finding in plants. Plant Mol. Biol., 48:39–48.
    • (2002) Plant Mol. Biol , vol.48 , pp. 39-48
    • Pertea, M.1    Salzberg, S.L.2
  • 71
    • 0034764340 scopus 로고    scopus 로고
    • Having a BLAST with bioinformatics (and avoiding BLASTphemy)
    • Pertsemlidis, A., and Fondon, J. W., 2002. Having a BLAST with bioinformatics (and avoiding BLASTphemy). Genome Biol., 2 (10):1–10.
    • (2002) Genome Biol , vol.2 , Issue.10 , pp. 1-10
    • Pertsemlidis, A.1    Fondon, J.W.2
  • 72
    • 0027268468 scopus 로고
    • Major chomosomal length polymorphisms are evident after meiosis in the phyto pathogenic fungus Leptosphaeria maculans
    • Plummer, K. M., and Howlett, B. J., 1993. Major chomosomal length polymorphisms are evident after meiosis in the phyto pathogenic fungus Leptosphaeria maculans. Curr. Genet., 24:107–113.
    • (1993) Curr. Genet , vol.24 , pp. 107-113
    • Plummer, K.M.1    Howlett, B.J.2
  • 73
    • 0028999343 scopus 로고
    • Inheritance of chromosomal length polymorphisms in the ascomycete Leptosphaeria maculans
    • Plummer, K. M., and Howlett, B. J., 1995. Inheritance of chromosomal length polymorphisms in the ascomycete Leptosphaeria maculans. Mol. Gen. Genet., 247:416–422.
    • (1995) Mol. Gen. Genet , vol.247 , pp. 416-422
    • Plummer, K.M.1    Howlett, B.J.2
  • 74
    • 0000417978 scopus 로고
    • The parasexual cycle in fungi
    • Pontecorvo, G., 1956. The parasexual cycle in fungi. Annu. Rev. Microbiol., 10:393–400.
    • (1956) Annu. Rev. Microbiol , vol.10 , pp. 393-400
    • Pontecorvo, G.1
  • 75
    • 0037166741 scopus 로고    scopus 로고
    • Refining transgenic mice
    • Pray, L., 2002. Refining transgenic mice. The Scientist, 16 (13):34
    • (2002) The Scientist , vol.16 , Issue.13 , pp. 34
    • Pray, L.1
  • 77
    • 0035664149 scopus 로고    scopus 로고
    • Bioinformatic tools for DNA/protein sequence analysis, functional assignment of genes and protein classification
    • Rehm, B. H. A., 2001. Bioinformatic tools for DNA/protein sequence analysis, functional assignment of genes and protein classification. Appl. Microbiol. Biotechnol., 57:579–592.
    • (2001) Appl. Microbiol. Biotechnol , vol.57 , pp. 579-592
    • Rehm, B.H.A.1
  • 78
    • 0036007668 scopus 로고    scopus 로고
    • Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems
    • Reiser, L., Mueller, L. A., and Rhee, S. Y., 2002. Surviving in a sea of data:a survey of plant genome data resources and issues in building data management systems. Plant Mol. Biol., 48:59–74.
    • (2002) Plant Mol. Biol , vol.48 , pp. 59-74
    • Reiser, L.1    Mueller, L.A.2    Rhee, S.Y.3
  • 79
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas, A., Williams, B. L., King, N., and Carroll, S. B., 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature (London), 425:798–804.
    • (2003) Nature (London) , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 81
    • 0037673973 scopus 로고    scopus 로고
    • Yeast rises again
    • Salzberg, S. L., 2003. Yeast rises again. Nature (London), 423:233–234.
    • (2003) Nature (London) , vol.423 , pp. 233-234
    • Salzberg, S.L.1
  • 82
    • 0242500329 scopus 로고    scopus 로고
    • Unrestricted free access works and must continue
    • Salzberg, S., Birney, E., Eddy, S., and White, O., 2003. Unrestricted free access works and must continue. Nature (London), 422:801
    • (2003) Nature (London) , vol.422 , pp. 801
    • Salzberg, S.1    Birney, E.2    Eddy, S.3    White, O.4
  • 83
    • 0036007664 scopus 로고    scopus 로고
    • Plant genome evolution: lessons from comparative genomics at the DNA level
    • Schmidt, R., 2002. Plant genome evolution:lessons from comparative genomics at the DNA level. Plant Mol. Biol., 48:21–37.
    • (2002) Plant Mol. Biol , vol.48 , pp. 21-37
    • Schmidt, R.1
  • 84
    • 0042568725 scopus 로고    scopus 로고
    • Pharmacophylogenomics: genes, evolution and drug targets
    • Searls, D. B., 2003. Pharmacophylogenomics:genes, evolution and drug targets. Nat. Rev., 2:613–623.
    • (2003) Nat. Rev , vol.2 , pp. 613-623
    • Searls, D.B.1
  • 85
    • 0037002267 scopus 로고    scopus 로고
    • Rice as a model for comparative genomics of plants
    • Shimamoto, K., and Kyozuka, J., 2002. Rice as a model for comparative genomics of plants. Annu. Rev. Plant Biol., 53:399–419.
    • (2002) Annu. Rev. Plant Biol , vol.53 , pp. 399-419
    • Shimamoto, K.1    Kyozuka, J.2
  • 88
    • 0033956060 scopus 로고    scopus 로고
    • The COG data-base: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov, R. L., Galperin, M. Y., Natale, D. A., and Koonin, E. V., 2000. The COG data-base:a tool for genome-scale analysis of protein functions and evolution. Nucl. Acids Res., 28:33–36.
    • (2000) Nucl. Acids Res , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 89
    • 0037232978 scopus 로고    scopus 로고
    • Understanding fungi through their genomes
    • Thacker, P. D., 2003. Understanding fungi through their genomes. Bioscience, 53:10–15.
    • (2003) Bioscience , vol.53 , pp. 10-15
    • Thacker, P.D.1
  • 90
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans : a platform for investigating biology
    • The C. elegans Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans:a platform for investigating biology. Science (Washington, D.C.), 282:2012–2018.
    • (1998) Science (Washington, D.C.) , vol.282 , pp. 2012-2018
  • 91
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • The International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature (London), 409:860–921.
    • (2001) Nature (London) , vol.409 , pp. 860-921
  • 93
  • 94
    • 0036677806 scopus 로고    scopus 로고
    • Transcript profiling in the barley mildew pathogen Blumeria graminis by serial analysis of gene expression (SAGE)
    • Thomas, S. W., Glaring, M. A., Rasmussen, S. W., Kinane, J. T., and Oliver, R. P., 2002. Transcript profiling in the barley mildew pathogen Blumeria graminis by serial analysis of gene expression (SAGE). Mol. Plant-Microbe Interact., 15:847–856.
    • (2002) Mol. Plant-Microbe Interact , vol.15 , pp. 847-856
    • Thomas, S.W.1    Glaring, M.A.2    Rasmussen, S.W.3    Kinane, J.T.4    Oliver, R.P.5
  • 98
    • 0036792211 scopus 로고    scopus 로고
    • Genomics of parasitic and symbiotic fungi
    • Tunlid, A., and Talbot, N. J., 2002. Genomics of parasitic and symbiotic fungi. Curr. Opin. Microbiol., 5:513–519.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 513-519
    • Tunlid, A.1    Talbot, N.J.2
  • 102
    • 0037310805 scopus 로고    scopus 로고
    • Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
    • Van Sluys, M. A., de Oliveira, M. C., Monteiro-Vitorello, C. B., Miykai, C. Y., Furlan, L. R., Camargo, L. E., 2003. Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. J. Bacteriol., 185:1018–1026.
    • (2003) J. Bacteriol , vol.185 , pp. 1018-1026
    • Van Sluys, M.A.1    de Oliveira, M.C.2    Monteiro-Vitorello, C.B.3    Miykai, C.Y.4    Furlan, L.R.5    Camargo, L.E.6
  • 103
    • 0034029892 scopus 로고    scopus 로고
    • Robustness against mutations in genetic networks of yeast
    • Wagner, A., 2000. Robustness against mutations in genetic networks of yeast. Nature Genet., 24:355–361.
    • (2000) Nature Genet , vol.24 , pp. 355-361
    • Wagner, A.1
  • 104
    • 0348044549 scopus 로고    scopus 로고
    • Genome trees constructed using five different approaches suggest new major bacterial clades
    • [serial online], Available from www.biomedcentral. com/1471-2148/1/8
    • Wolf, Y. I., Rogozin, I. B., Grishin, N. V., Tatusov, R. L., and Koonin, E. V., 2001. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol., 1:8 [serial online], Available from www.biomedcentral. com/1471-2148/1/8
    • (2001) BMC Evol. Biol , vol.1 , pp. 8
    • Wolf, Y.I.1    Rogozin, I.B.2    Grishin, N.V.3    Tatusov, R.L.4    Koonin, E.V.5
  • 107
    • 0242669367 scopus 로고    scopus 로고
    • Data-mining approaches reveal hidden families of proteases in the genome of malaria parasite
    • Wu, Y., Wang, X., Liu, X., and Wang, Y., 2003. Data-mining approaches reveal hidden families of proteases in the genome of malaria parasite. Genome Res., 13:601–616.
    • (2003) Genome Res , vol.13 , pp. 601-616
    • Wu, Y.1    Wang, X.2    Liu, X.3    Wang, Y.4
  • 110
    • 0034932567 scopus 로고    scopus 로고
    • Fungal genomics and pathogenicity
    • Yoder, O. C., and Turgeon, B. G., 2001. Fungal genomics and pathogenicity. Curr. Opin. Plant Biol., 4:315–321.
    • (2001) Curr. Opin. Plant Biol , vol.4 , pp. 315-321
    • Yoder, O.C.1    Turgeon, B.G.2
  • 111
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu, J., Hu, S., Wang, J., Wang, G. K. S., Li, S. G., Liu, B., 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (Washington), 296:79–92.
    • (2002) Science (Washington) , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wang, G.K.S.4    Li, S.G.5    Liu, B.6
  • 112
    • 0035576433 scopus 로고    scopus 로고
    • Fungi and humans: closer than you think
    • Zeng, Q., Morales, A. J., and Cottarel, G., 2001. Fungi and humans:closer than you think. Trends Genet., 17:682–684.
    • (2001) Trends Genet , vol.17 , pp. 682-684
    • Zeng, Q.1    Morales, A.J.2    Cottarel, G.3
  • 113
    • 0028838341 scopus 로고
    • Chromosome-length polymorphism in fungi
    • Zolan, M. E., 1995. Chromosome-length polymorphism in fungi. Microbiol. Rev., 59:686–698.
    • (1995) Microbiol. Rev , vol.59 , pp. 686-698
    • Zolan, M.E.1


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