Fungal biology and agriculture: Revisiting the field

Molecular Plant-Microbe Interactions

Volumn 16, Issue 10, 2003, Pages 859-866

  Yarden, O ^a   Ebbole, D J ^b   Freeman, S ^c   Rodriguez, R J ^d,e   Dickman, M B ^f  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b TEXAS A AND M UNIVERSITY   (United States)

^c VOLCANI CENTER   (Israel)

^d U S GEOLOGICAL SURVEY   (United States)

^e UNIVERSITY OF WASHINGTON   (United States)

^f UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGI;

EID: 0141453445     PISSN: 08940282     EISSN: None     Source Type: Journal    
DOI: 10.1094/MPMI.2003.16.10.859     Document Type: Review

References (45)

1. Apel-Birkhold P. C., and Walton, J. D. 1996. Cloning, disruption, and expression of two endo-beta 1,4-xylanase genes, XYL2 and XYL3, from Cochliobolus carbonum. Appl. Environ. Microbiol. 62:4129-4135.
2. Baker, B., Zambryski, P., Staskawicz, B., and Dinesh-Kumar, S. P. 1997. Signaling in plant-microbe interactions. Science 276:726-733.
3. Ballvora, A., Ercolano, M. R., Weib, J., Meksem, K., Bormann, C. A., Oberhagemann, P., Salamini, F., and Gebhardt, C. 2002. The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LgR class of plant resistance genes. Plant J. 30:361-371.
4. Bennett, J. W. 1997. White paper: Genomics for filamentous fungi. Fungal Genet. Biol. 21:3-7.
5. Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellamn, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C. A., Causton, H. C., Gaasterland, T., Glenisson, P., Holstege, F. C. P., Kim, I. F., Markowitz, V., Matese, J. C., Parkinson, H., Robinson, A., Sarkans, U., Schulze-Kremer, S., Stewart, J., Taylor, R., Vlo, J., and Vingron, M. 2001. Minimum information about a microarray experiment (M1AME) - toward standards for microarray data. Nat. Genet. 29:365-371.
6. Carbone, I., and Kohn, L. M. 2001. A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. Mol. Ecol. 10:947-964.
7. Coppins B. J., and Wolseley, P. 2002. Lichens of tropical forests. Pages 113-131 in: Tropical Mycology: Volume 2, Micromycetes. R. Watling, J. C. Frankland, A. M. Ainsworth, S. Isaac, and C. H. Robinson, eds. CABI Publishing, Wallingford, U.K.
8. Couch, B. C., and Kohn, L. M. 2002. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94:683-693.
9. Dean, R. A. 1997. Signal pathways and appressorium morphogenesis. Annu. Rev. Phytopathol. 35:211-234.
10. de Backer, M. D., Ilyina, T., Ma, X. J., Vandoninck, S., Luyten, W. H., and Vanden-Bossche, H. 2001. Genomic profiling of the response of Candida albicans to itraconazole treatment using a DNA microarray. Antimicrob. Agents Chemother. 45:1660-1670.
11. deJong, C. F., Takken, F. L., Cai, X., de Wit, P. J., and Joosten, M. H. 2002. Attenuation of Cf-mediated defense responses at elevated temperatures correlates with a decrease in elicitor-binding sites. Mol. Plant-Microbe Interact. 15:1040-1049.
12. deJong, J. C., McCormack, B. J., Smirnoff, N., and Talbot, N. J. 1997. Glycerol generates turgot in rice blast. Nature 389:244-245.
13. Dickman, M. B., Park, Y. K., Oltersdorf, T., Li, W., Clemente, T., and French. R. 2001. Abrogation of disease development in plants expressing animal anti-apoptotic genes. Proc. Natl. Acad. Sci. U.S.A. 98: 6957-6962.
14. Galagan, J. E., Calvo, S. E., Borkovich, K. A., Selker, E. U., Read, N. D., FitzHugh, W., Ma, L.-J., Smirnov, S., Purcell, S., Rehman, B., Elkins, T., Engels, R., Wang, S., Nielsen, C. B., Butler, J., Jaffe, D., Endrizzi, M., Qui, D., Ianakiev, P. Bell-Pedersen, D. Nelson, M. A., Werner-Washburne, M., Selitrennikoff, C. P., Kinsey, J. A., Braun, E. L., Zelter, A., Schulte, U., Kothe, G. O., Jedd, G., Mewes, W., Staben, C., Marcotte, E., Greenberg, D., Roy, A., Foley, K., Naylor, J., Stange-Thomann, N., Barrett, R., Gnerre, S., Kamal, M., Kamvysselis, M., Bielke, C., Rudd, S., Frishman, D., Krystofova, S., Rasmussen, C., Metzenberg, R. L., Perkins, D. D., Kroken, S., Catcheside, D., Li, W., Pratt, R. J., Osmani, S. A., DeSouza, C. P. C., Glass, L. Orbach, M. J., Berglund, J. A., Voelker, R., Yarden, O., Plamann, M., Seiler, S., Dunlap, J., Radford, A. Aramayo, R., Natvig, D. O., Alex, L. A., Mannhaupt, G., Ebbole, D. J., Freitag, M., Paulsen, I., Sachs, M. S., Lander, E. S., Nusbaum C., and Birren, B. 2003. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868.
15. Gatehouse, A. M. R., Ferry, N., and Raemaekers, J. M. 2002. The case of the monarch butterfly: a verdict returned. Trends Genet. 18:249-251.
16. Hawksworth, D. L. 2001. The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol. Res. 105:1422-1432.
17. Howard, R. J., Ferrari, M. A., Roach, D. H., and Money, N. P. 1991. Penetration of hard substrates by a fungus employing enormous turgor pressure. Proc. Natl. Acad. Sci. U.S.A. 88:11281-11284
18. Howard, R. J., and Gow N. A. R., eds. 2001. Biology of the fungal cell. In: The Mycota. K. Esser, ed. Springer-Verlag, Berlin.
19. Jones, J. D. G. 2001. Putting knowledge of plant disease resistance genes to work. Curr. Opin. Plant Biol. 4:281-287.
20. Kahmann R., and Basse, C. 2001. Fungal gene expression during pathogenesis-related development and host plant colonization. Curr. Opin. Microbiol. 4:374-380.
21. Kang, S. Lebrun, M. H., Farrall, L., and Valent, B. 2001. Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol. Plant-Microbe Interact. 14:671-674.
22. Lan, C. Y., Newport, G. Murillo, L. A., Jones, T., Scherer, S., Davis, R. W., and Agabian, N. 2002. Metabolic specialization associated with phenotypic switching in Candida albicans. Proc. Natl. Acad. Sci. U.S.A. 99:14907-14912.
23. Lee, N., and Kronstad, J. W. 2002. ras2 Controls morphogenesis, pheromone response, and pathogenicity in the fungal pathogen Ustilago maydis. Euk. Cell 1:954-966.
24. Lewis, Z. A., Correa, A., Schwerdtfeger, C., Link, K. L., Xie, X., Gomer, H. R., Thomas, T., Ebbole, D. J., and Bell-Pedersen, D. 2002. Overexpression of WHITE COLLAR-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa. Mol. Microbiol. 45:917-931.
25. Lopez-Otin, C., and Overall, C. M. 2002. Protease degradomics: a new challenge for proteomics. Nat. Rev. Mol. Cell. Biol. 3:509-519.
26. Lorenz, M. C. 2002. Genomic approaches to fungal pathogenicity. Curr. Opin. Microbiol. 5:372-378.
27. Melin, P., Schnurer, J., and Wagner, E. G. 2002. Proteome analysis of Aspergillus nidulans reveals proteins associated with the response to the antibiotic concanamycin A, produced by Streptomyces species. Mol. Genet. Genomics. 267:695-702.
28. Money, N. P. 1999. Biophysics: Fungus punches its way in. Nature 401:332-333.
29. Murad, A. M., d'Enfert, C., Gaillardin, C., Tournu, H., Tekaia, F., Talibi, D., Marechal, D., Marchais, V., Cottin, J., and Brown, A. J. 2001. Transcript profiling in Candida albicans reveals new cellular functions for the transcriptional repressors CaTup1, CaMig1 and CaNrg1. Mol. Microbiol. 42:981-993.
30. O'Donnell, P. J., Jones, J. B., Antoine, F. R., Ciardi, J., and Klee, H. J. 2001. Ethylene-dependent salicylic acid regulates an expanded cell death response to a plant pathogen. Plant J. 25:315-323.
31. Park, G., Xue, G. Y., Zheng, L., Lam, S., and Xu, J. R. 2002. MSTI2 regulates infectious growth but not appressorium formation in the rice blast fungus Magnaporthe grisea Mol. Plant-Microbe Interact. 15:183-192.
32. Pennisi, E. 2001. The push to pit genomics against fungal pathogens. Science 292:2273-2274.
33. Perkins, D. D. 1991. In praise of diversity. Pages 3-26 in: More Gene Manipulations in Fungi, J. W. Bennet and L. L. Lasure, eds. Academic Press, San Diego, CA.
34. Pilloff, R. K., Devadas, S. K., Enyedi, A., and Raina, R. 2002. The Arabidopsis gain-of-function mutant dll spontaneously develops lesions mimicking cell death associated with disease. Plant J. 30:61-70.
35. Pringle, A., and Taylor, J. W. 2002. The fitness of filamentous fungi. Trends Microbiol. 10:474-481.
36. Sanchez, G. M., Smart, C. D., Simko, I., Bonierbale, M., Ewing, E. E., May, G., Greenland, A., and Fry, W. E. 2000. Identification of two new R-genes to Phytophthora infestans from Solanum berthaultii. (Abstr.) Phytopathology 90:S68.
37. Scott-Craig, J. S., Panaccione, D. G., Cervone, F, and Walton, J. D. 1990. Endopolygalacturonase is not required for pathogenicity of Cochliobolus carbonum on maize. Plant Cell 2:1191-1200.
38. Sequeira, L. 2000. Legacy for the millennium: a century of progress in plant pathology. Annu. Rev. Phytopathol. 38:1-17.
39. Soanes, D. M., Skinner, W., Keon, J., Hargreaves, J., and Talbot, N. J. 2002. Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol. Plant-Microbe Interact. 15:421-427.
40. Takken, F. L. W. Luderer, R., Gabriëls, S. H. E. J., Westerink. N., Lu, R., de Wit, P. J. G. M., and Joosten, M. H. A. J. 2000. A functional cloning strategy, based on a binary PVX-expression vector, to isolate HR-inducing cDNAs of plant pathogens. Plant J. 24:275-283.
41. Tucker, S. L., and Talbot. N. J. 2001. Surface attachment and pre-penetration stage development by plant pathogenic fungi. Annu. Rev. Phytopathol. 39:385-417
42. Tyler, B. M. 2002. Molecular basis of recognition between Phytophthora pathogens and their hosts. Annu. Rev. Phytopathol. 40:137-167.
43. van West, P., Lis, S., Shepherd, S. J., and Gow, N. A. R. 2001. Identification of stage specific secreted proteins in Phytophthora sp. 10th Int. Congr. Mol. Plant Microbe Interact. Madison, WI.
44. Wolf, M. S., and McDermott, J. M. 1994. Population genetics of plant pathogen interactions: the example of the Erysiphe graminis-Horedum vulagare pathosystem. Annu. Rev. Phytopathol. 32:89-113.
45. Xu, J. R., and Hamer, J. G. 1996. MAP kinase and cAMP signaling regulate infection structure formation and pathogenic growth in the rice blast fungus Magnaporthe grisea. Genes Dev. 10:2696-2706.