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Volumn 14, Issue 2, 2003, Pages 226-231

Fungal genomics beyond Saccharomyces cerevisiae?

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 0038742815     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0958-1669(03)00020-X     Document Type: Review
Times cited : (27)

References (35)
  • 2
    • 0037148758 scopus 로고    scopus 로고
    • The genome sequence of Schizosaccharomyces pombe
    • Report on the complete genome sequence of the second fungus to be sequenced. Provides the first evaluation of the diversity of fungi and a comparison with other prokaryotic and eukaryotic organisms based on whole genome sequences.
    • Wood V., Gwilliam R., Rajandream M.A., Lyne M., Lyne R., Stewart A., Sgouros J., Peat N., Hayles J., Baker S.et al. The genome sequence of Schizosaccharomyces pombe. Nature. 415:2002;871-880 Report on the complete genome sequence of the second fungus to be sequenced. Provides the first evaluation of the diversity of fungi and a comparison with other prokaryotic and eukaryotic organisms based on whole genome sequences.
    • (2002) Nature , vol.415 , pp. 871-880
    • Wood, V.1    Gwilliam, R.2    Rajandream, M.A.3    Lyne, M.4    Lyne, R.5    Stewart, A.6    Sgouros, J.7    Peat, N.8    Hayles, J.9    Baker, S.10
  • 3
    • 0000437806 scopus 로고    scopus 로고
    • Genomics for fungi
    • Edited by Howard RJ, Gow NA. Heidelberg: Springer
    • Bennett JW, Arnold J: Genomics for fungi. In A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research. Edited by Howard RJ, Gow NA. Heidelberg: Springer; 2002:267-297. This review summarizes the history and present status of fungal genomics, and gives a nice overview of general methods, databases and possible future applications.
    • (2002) A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research , pp. 267-297
    • Bennett, J.W.1    Arnold, J.2
  • 4
    • 0036360821 scopus 로고    scopus 로고
    • Progress of Aspergillus oryzae genomics
    • Machida M. Progress of Aspergillus oryzae genomics. Adv. Appl. Microbiol. 51:2002;81-106.
    • (2002) Adv. Appl. Microbiol. , vol.51 , pp. 81-106
    • Machida, M.1
  • 5
    • 85031191672 scopus 로고    scopus 로고
    • Fungal Genome Initiative: White paper developed by the Fungal Research Community. 2002. URL: http://www-genome.wi.mit.edu/seq/fgi/. Proposal for the genome sequencing of 15 fungi giving reasons for the importance of each species and the whole project. Five fungi each are chosen from the fields of commercial applications, medical applications and evolution and fungal diversity.
    • (2002) White Paper Developed by the Fungal Research Community
  • 6
    • 0037204930 scopus 로고    scopus 로고
    • Sequencing. Chimps and fungi make genome
    • Pennisi E. Sequencing. Chimps and fungi make genome. Science. 296:2002;1589-1591.
    • (2002) Science , vol.296 , pp. 1589-1591
    • Pennisi, E.1
  • 7
    • 0035458366 scopus 로고    scopus 로고
    • The art and design of genetic screens: Yeast
    • Forsburg S.L. The art and design of genetic screens: yeast. Nat. Rev. Genet. 2:2001;659-668.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 659-668
    • Forsburg, S.L.1
  • 8
    • 0036735329 scopus 로고    scopus 로고
    • The art and design of genetic screens: Filamentous fungi
    • Casselton L., Zolan M. The art and design of genetic screens: filamentous fungi. Nat. Rev. Genet. 3:2002;683-697.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 683-697
    • Casselton, L.1    Zolan, M.2
  • 9
    • 0035319601 scopus 로고    scopus 로고
    • Emerging technologies in yeast genomics
    • Kumar A., Snyder M. Emerging technologies in yeast genomics. Nat. Rev. Genet. 2:2001;302-312.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 302-312
    • Kumar, A.1    Snyder, M.2
  • 10
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • This paper presents the first work that is based on a mutant collection that comprises a nearly complete set of gene deletion mutants. Using a parallel analysis strategy, the importance of single genes for growth under different conditions was investigated.
    • Giaever G., Chu A.M., Ni L., Connelly C., Riles L., Veronneau S., Dow S., Lucau-Danila A., Anderson K., Andre B.et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418:2002;387-391 This paper presents the first work that is based on a mutant collection that comprises a nearly complete set of gene deletion mutants. Using a parallel analysis strategy, the importance of single genes for growth under different conditions was investigated.
    • (2002) Nature , vol.418 , pp. 387-391
    • Giaever, G.1    Chu, A.M.2    Ni, L.3    Connelly, C.4    Riles, L.5    Veronneau, S.6    Dow, S.7    Lucau-Danila, A.8    Anderson, K.9    Andre, B.10
  • 11
    • 0035775725 scopus 로고    scopus 로고
    • A new approach to decoding life: Systems biology
    • This paper gives an outlook on the data from functional genomics might be integrated in order to achieve a better understanding of the systems that are operating in living organisms. It reviews the necessary frameworks and summarizes the first attempts within this field.
    • Ideker T., Galitski T., Hood L. A new approach to decoding life: systems biology. Annu. Rev. Genomics. Hum. Genet. 2:2001;343-372 This paper gives an outlook on the data from functional genomics might be integrated in order to achieve a better understanding of the systems that are operating in living organisms. It reviews the necessary frameworks and summarizes the first attempts within this field.
    • (2001) Annu. Rev. Genomics. Hum. Genet. , vol.2 , pp. 343-372
    • Ideker, T.1    Galitski, T.2    Hood, L.3
  • 12
    • 0036284760 scopus 로고    scopus 로고
    • An expanded role for microbial physiology in metabolic engineering and functional genomics: Moving towards systems biology
    • Nielsen J., Olsson L. An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology. FEMS Yeast Research. 2:2002;175-181.
    • (2002) FEMS Yeast Research , vol.2 , pp. 175-181
    • Nielsen, J.1    Olsson, L.2
  • 14
    • 0036726369 scopus 로고    scopus 로고
    • Global analysis of gene expression in yeast
    • Horak C.E., Snyder M. Global analysis of gene expression in yeast. Funct. Integr. Genomics. 2:2002;171-180.
    • (2002) Funct. Integr. Genomics. , vol.2 , pp. 171-180
    • Horak, C.E.1    Snyder, M.2
  • 15
    • 0036729529 scopus 로고    scopus 로고
    • The transcriptional program of meiosis and sporulation in fission yeast
    • Mata J., Lyne R., Burns G., Bahler J. The transcriptional program of meiosis and sporulation in fission yeast. Nat. Genet. 32:2002;143-147.
    • (2002) Nat. Genet. , vol.32 , pp. 143-147
    • Mata, J.1    Lyne, R.2    Burns, G.3    Bahler, J.4
  • 16
    • 0034894633 scopus 로고    scopus 로고
    • Gene information for fungal plant pathogens from expressed sequences
    • Skinner W., Keon J., Hargreaves J. Gene information for fungal plant pathogens from expressed sequences. Curr. Opin. Microbiol. 4:2001;381-386.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 381-386
    • Skinner, W.1    Keon, J.2    Hargreaves, J.3
  • 17
    • 0037134512 scopus 로고    scopus 로고
    • Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays
    • This paper represents the first analysis where large scale EST sequencing is combined with the use of cDNA arrays in order to elucidate fundamental differences between S. cerervisiae and T. reesei in their responses to exhaustion of glucose in the growth medium.
    • Chambergo F.S., Bonaccorsi E.D., Ferreira A.J., Ramos A.S., Ferreira J.J. Jr., Abrahao-Neto J., Farah J.P., El Dorry H. Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays. J. Biol. Chem. 277:2002;13983-13988 This paper represents the first analysis where large scale EST sequencing is combined with the use of cDNA arrays in order to elucidate fundamental differences between S. cerervisiae and T. reesei in their responses to exhaustion of glucose in the growth medium.
    • (2002) J. Biol. Chem. , vol.277 , pp. 13983-13988
    • Chambergo, F.S.1    Bonaccorsi, E.D.2    Ferreira, A.J.3    Ramos, A.S.4    Ferreira J.J., Jr.5    Abrahao-Neto, J.6    Farah, J.P.7    El Dorry, H.8
  • 18
    • 0036939689 scopus 로고    scopus 로고
    • ChsZ, a gene for a novel class of chitin synthase from Aspergillus oryzae
    • Chigira Y., Abe K., Gomi K., Nakajima T. chsZ, a gene for a novel class of chitin synthase from Aspergillus oryzae. Curr. Genet. 41:2002;261-267.
    • (2002) Curr. Genet. , vol.41 , pp. 261-267
    • Chigira, Y.1    Abe, K.2    Gomi, K.3    Nakajima, T.4
  • 20
    • 0036203423 scopus 로고    scopus 로고
    • Metabolic engineering of the morphology of Aspergillus oryzae by altering chitin synthesis
    • Muller C., McIntyre M., Hansen K., Nielsen J. Metabolic engineering of the morphology of Aspergillus oryzae by altering chitin synthesis. Appl. Environ. Microbiol. 68:2002;1827-1836.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1827-1836
    • Muller, C.1    McIntyre, M.2    Hansen, K.3    Nielsen, J.4
  • 21
  • 22
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • Bader G.D., Hogue C.W. Analyzing yeast protein-protein interaction data obtained from different sources. Nat. Biotechnol. 20:2002;991-997.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.2
  • 24
    • 0035987407 scopus 로고    scopus 로고
    • The post-genomic era of interactive proteomics: Facts and perspectives
    • Auerbach D., Thaminy S., Hottiger M.O., Stagljar I. The post-genomic era of interactive proteomics: facts and perspectives. Proteomics. 2:2002;611-623.
    • (2002) Proteomics , vol.2 , pp. 611-623
    • Auerbach, D.1    Thaminy, S.2    Hottiger, M.O.3    Stagljar, I.4
  • 25
    • 0034844811 scopus 로고    scopus 로고
    • Proteome analysis of Aspergillus fumigatus identifies glycosylphosphatidylinositol-anchored proteins associated to the cell wall biosynthesis
    • Bruneau J.M., Magnin T., Tagat E., Legrand R., Bernard M., Diaquin M., Fudali C., Latge J.P. Proteome analysis of Aspergillus fumigatus identifies glycosylphosphatidylinositol-anchored proteins associated to the cell wall biosynthesis. Electrophoresis. 22:2001;2812-2823.
    • (2001) Electrophoresis , vol.22 , pp. 2812-2823
    • Bruneau, J.M.1    Magnin, T.2    Tagat, E.3    Legrand, R.4    Bernard, M.5    Diaquin, M.6    Fudali, C.7    Latge, J.P.8
  • 26
    • 0032828315 scopus 로고    scopus 로고
    • Candida albicans pathogenicity: A proteomic perspective
    • Niimi M., Cannon R.D., Monk B.C. Candida albicans pathogenicity: a proteomic perspective. Electrophoresis. 20:1999;2299-2308.
    • (1999) Electrophoresis , vol.20 , pp. 2299-2308
    • Niimi, M.1    Cannon, R.D.2    Monk, B.C.3
  • 27
    • 0035406437 scopus 로고    scopus 로고
    • Proteins associated with the cell envelope of Trichoderma reesei: A proteomic approach
    • Lim D., Hains P., Walsh B., Bergquist P., Nevalainen H. Proteins associated with the cell envelope of Trichoderma reesei: a proteomic approach. Proteomics. 1:2001;899-909.
    • (2001) Proteomics , vol.1 , pp. 899-909
    • Lim, D.1    Hains, P.2    Walsh, B.3    Bergquist, P.4    Nevalainen, H.5
  • 28
    • 0036047816 scopus 로고    scopus 로고
    • Proteome analysis of Aspergillus nidulans reveals proteins associated with the response to the antibiotic concanamycin A, produced by Streptomyces species
    • Melin P., Schnurer J., Wagner E.G. Proteome analysis of Aspergillus nidulans reveals proteins associated with the response to the antibiotic concanamycin A, produced by Streptomyces species. Mol. Genet. Genomics. 267:2002;695-702.
    • (2002) Mol. Genet. Genomics. , vol.267 , pp. 695-702
    • Melin, P.1    Schnurer, J.2    Wagner, E.G.3
  • 29
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • Griffin T.J., Gygi S.P., Ideker T., Rist B., Eng J., Hood L., Aebersold R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol. Cell Proteomics. 1:2002;323-333.
    • (2002) Mol. Cell Proteomics. , vol.1 , pp. 323-333
    • Griffin, T.J.1    Gygi, S.P.2    Ideker, T.3    Rist, B.4    Eng, J.5    Hood, L.6    Aebersold, R.7
  • 31
    • 0037200931 scopus 로고    scopus 로고
    • A functional genomics approach using metabolomics and in silico pathway analysis
    • Forster J., Gombert A.K., Nielsen J. A functional genomics approach using metabolomics and in silico pathway analysis. Biotechnol. Bioeng. 79:2002;703-712.
    • (2002) Biotechnol. Bioeng. , vol.79 , pp. 703-712
    • Forster, J.1    Gombert, A.K.2    Nielsen, J.3
  • 32
    • 0037087377 scopus 로고    scopus 로고
    • Decreasing acetic acid accumulation by a glycerol overproducing strain of Saccharomyces cerevisiae by deleting the ALD6 aldehyde dehydrogenase gene
    • Eglinton J.M., Heinrich A.J., Pollnitz A.P., Langridge P., Henschke P.A., de Barros L.M. Decreasing acetic acid accumulation by a glycerol overproducing strain of Saccharomyces cerevisiae by deleting the ALD6 aldehyde dehydrogenase gene. Yeast. 19:2002;295-301.
    • (2002) Yeast , vol.19 , pp. 295-301
    • Eglinton, J.M.1    Heinrich, A.J.2    Pollnitz, A.P.3    Langridge, P.4    Henschke, P.A.5    De Barros, L.M.6
  • 33
    • 0037174293 scopus 로고    scopus 로고
    • DNA chips for yeast biotechnology. The case of wine yeasts
    • Review of the problems and potential of DNA microarrays for the investigation of strains of S. cerevisiae used in industry. This paper also summarizes nicely the differences of strains used in laboratories for fundamental research and industrial strains.
    • Perez-Ortin J.E., Garcia-Martinez J., Alberola T.M. DNA chips for yeast biotechnology. The case of wine yeasts. J. Biotechnol. 98:2002;227-241 Review of the problems and potential of DNA microarrays for the investigation of strains of S. cerevisiae used in industry. This paper also summarizes nicely the differences of strains used in laboratories for fundamental research and industrial strains.
    • (2002) J. Biotechnol. , vol.98 , pp. 227-241
    • Perez-Ortin, J.E.1    Garcia-Martinez, J.2    Alberola, T.M.3
  • 34
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3


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