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Volumn 406, Issue 6797, 2000, Pages 799-803

Microbial genome sequencing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENE; BACTERIAL GENETICS; GENE SEQUENCE; GENETIC ANALYSIS; GENOME; NONHUMAN; PRIORITY JOURNAL; REVIEW;

EID: 0034680168     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/35021244     Document Type: Review
Times cited : (137)

References (37)
  • 2
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae
    • Fleischmann, R. D. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae. Science 269, 496-512 (1995).
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 4
    • 0001899550 scopus 로고
    • TIGR assembler: A new tool for assembling large shotgun sequencing projects
    • Sutton, G. G., White, O., Adams, M. D. & Kerlavage, A. R. TIGR Assembler: a new tool for assembling large shotgun sequencing projects. Genome Sci. Technol. 1, 9-19 (1995).
    • (1995) Genome Sci. Technol. , vol.1 , pp. 9-19
    • Sutton, G.G.1    White, O.2    Adams, M.D.3    Kerlavage, A.R.4
  • 6
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.1    Eddy, S.R.2
  • 7
    • 0033976458 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman, A. et al. The Pfam Protein Families Database. Nucleic Acids Res. 28, 263-266 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 263-266
    • Bateman, A.1
  • 8
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese, C. R. & Fox, G. E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl Acad. Sci. USA 74, 5088-5090 (1977).
    • (1977) Proc. Natl Acad. Sci. USA , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 9
    • 0030091189 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies, J. Origins and evolution of antibiotic resistance. Microbiology 12, 9-16 (1996).
    • (1996) Microbiology , vol.12 , pp. 9-16
    • Davies, J.1
  • 10
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence, J. G. & Ochman, H. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA 95, 9413-9417 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 11
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle, W. F. Phylogenetic classification and the universal tree. Science 284, 2124-2129 (1999).
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 12
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosomes: A challenge en route to a tree of genomes
    • Martin, W. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays 21, 99-104 (1999).
    • (1999) Bioessays , vol.21 , pp. 99-104
    • Martin, W.1
  • 13
    • 0031736121 scopus 로고    scopus 로고
    • Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
    • Aravind, L., Tatusov, R. L., Wolf, Y. I., Walker, D. R. & Koonin, E. V. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 14, 442-444 (1998).
    • (1998) Trends Genet. , vol.14 , pp. 442-444
    • Aravind, L.1    Tatusov, R.L.2    Wolf, Y.I.3    Walker, D.R.4    Koonin, E.V.5
  • 14
    • 0033609333 scopus 로고    scopus 로고
    • Genome sequencing of thermotoga muritima: Evidence for lateral gene transfer between bacteria and archaea
    • Nelson, K. E. et al. Genome sequencing of Thermotoga muritima: evidence for lateral gene transfer between bacteria and archaea. Nature 399, 323-329 (1999).
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1
  • 15
    • 0342768762 scopus 로고    scopus 로고
    • Archaeal and bacterial hyperthermophiles: Horizontal gene exchange or common ancestry?
    • Kyrpides, N. C. & Olsen, G. J. Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry? Trends Genet 15, 298-299 (1999).
    • (1999) Trends Genet , vol.15 , pp. 298-299
    • Kyrpides, N.C.1    Olsen, G.J.2
  • 16
    • 0033118273 scopus 로고    scopus 로고
    • Proteome composition and codon usage in spirochaetes: Species-specific and DNA strand-specific mutational biases
    • Lafay, B. et al. Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. Nucleic Acids Res. 27, 1642-1649 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1642-1649
    • Lafay, B.1
  • 17
    • 0027616543 scopus 로고
    • Alignment-ambigous nucleotide sites and the exclusion of systematic data
    • Gatesy, J., Desalle, R. & Wheller, W. Alignment-ambigous nucleotide sites and the exclusion of systematic data. Mol. Phylog. Evol. 2, 152-157 (1993).
    • (1993) Mol. Phylog. Evol. , vol.2 , pp. 152-157
    • Gatesy, J.1    Desalle, R.2    Wheller, W.3
  • 18
    • 0032874259 scopus 로고    scopus 로고
    • The rooting of the universal tree of life is not reliable
    • Philippe, H. & Forterre, P. The rooting of the universal tree of life is not reliable. J. Mol. Evol. 49, 509-523 (1999).
    • (1999) J. Mol. Evol. , vol.49 , pp. 509-523
    • Philippe, H.1    Forterre, P.2
  • 19
    • 0029610851 scopus 로고
    • The RecA protein as a model molecular systematic studies of bacteria: Comparison of trees of RecAs and 16s rRNAs from the same species
    • Eisen, J. A. The RecA protein as a model molecular systematic studies of bacteria: comparison of trees of RecAs and 16s rRNAs from the same species. J. Mol. Evol. 41, 1105-1123 (1995).
    • (1995) J. Mol. Evol. , vol.41 , pp. 1105-1123
    • Eisen, J.A.1
  • 20
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogioy based on gene content
    • Snel, B., Bork, P. & Huynen, M. A. Genome phylogioy based on gene content. Nature Genet. 21, 108-110 (1999).
    • (1999) Nature Genet. , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 21
    • 0032766490 scopus 로고    scopus 로고
    • Comparative genomics of the Archaea (Euyarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
    • Makarova, K. S. et al. Comparative genomics of the Archaea (Euyarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res. 9, 608-628 (1999).
    • (1999) Genome Res. , vol.9 , pp. 608-628
    • Makarova, K.S.1
  • 23
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R., Rivera, M. Lake, J. A. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. USA 96, 3801-3806 (1999).
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.2    Lake, J.A.3
  • 24
    • 0033552961 scopus 로고    scopus 로고
    • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen. Helicobacter pylori
    • Alm, R. A. et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen. Helicobacter pylori. Nature 397, 176-180 (1999).
    • (1999) Nature , vol.397 , pp. 176-180
    • Alm, R.A.1
  • 25
    • 0034654345 scopus 로고    scopus 로고
    • Genome sequences of Chlomydia trachomatis MoPn and Chlamydia pneumoniae AR39
    • Read, T. D. et al. Genome sequences of Chlomydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28, 1397-1406 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1397-1406
    • Read, T.D.1
  • 26
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb, J. F. et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547 (1997).
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.F.1
  • 27
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complex genome sequence
    • Cole, S. T. et al. Deciphering the biology of Mycobacterium tuberculosis from the complex genome sequence. Nature 393, 537-544 (1998).
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1
  • 28
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genetalium
    • Fraser, C. M. et al. The minimal gene complement of Mycoplasma genetalium. Science 270, 397-403 (1995).
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 29
    • 10544255079 scopus 로고    scopus 로고
    • Complete sequence analysis of the genome of the bacterium, Mycoplasma pneumoniae
    • Himmelreich, R. et al. Complete sequence analysis of the genome of the bacterium, Mycoplasma pneumoniae. Nucleic Acids Res. 24, 4420-4291 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4420-14291
    • Himmelreich, R.1
  • 30
    • 0032540874 scopus 로고    scopus 로고
    • Complete genome sequence of Treponema pallidum, the syphilis spirochete
    • Fraser, C. M. et al. Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science 281, 375-388 (1998).
    • (1998) Science , vol.281 , pp. 375-388
    • Fraser, C.M.1
  • 31
    • 12744257602 scopus 로고    scopus 로고
    • Chromosome 2 sequence of the human malaria parasite plasmodium falciparum
    • Gardner, M. J. et al. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Science 282, 1126-1132 (1998).
    • (1998) Science , vol.282 , pp. 1126-1132
    • Gardner, M.J.1
  • 32
    • 0031470826 scopus 로고    scopus 로고
    • Genomic sequence of a lyme disease spirochaete. Borrelia burgdorferi
    • Fraser, C. M. et al. Genomic sequence of a lyme disease spirochaete. Borrelia burgdorferi. Nature 390, 580-586 (1997).
    • (1997) Nature , vol.390 , pp. 580-586
    • Fraser, C.M.1
  • 33
    • 0029618707 scopus 로고
    • Characterization of repetitive DNA in the Mycoplasma genitalium genome: Possible role in the generation of antigenic variation
    • Peterson, S. N. et al. Characterization of repetitive DNA in the Mycoplasma genitalium genome: possible role in the generation of antigenic variation. Proc. Natl Acad Sci. USA 92, 11829-11833 (1995).
    • (1995) Proc. Natl Acad Sci. USA , vol.92 , pp. 11829-11833
    • Peterson, S.N.1
  • 34
    • 0034629284 scopus 로고    scopus 로고
    • Identification of vaccine candidates against serogroup B meningococcus by whole genome sequencing
    • Pizza, M. et al. Identification of vaccine candidates against serogroup B meningococcus by whole genome sequencing. Science 287, 1816-1820 (2000).
    • (2000) Science , vol.287 , pp. 1816-1820
    • Pizza, M.1
  • 35
    • 0034629478 scopus 로고    scopus 로고
    • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
    • Tettelin, H. et al. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287, 1809-1815 (2000).
    • (2000) Science , vol.287 , pp. 1809-1815
    • Tettelin, H.1
  • 36
    • 0033520336 scopus 로고    scopus 로고
    • Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs
    • Jomaa, H. et al. Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs. Science 285, 1573-1576 (1999).
    • (1999) Science , vol.285 , pp. 1573-1576
    • Jomaa, H.1
  • 37
    • 0033520437 scopus 로고    scopus 로고
    • Planting the seeds of new antirmalarial drugs
    • Ridley, R. G. Planting the seeds of new antirmalarial drugs. Science 285, 1502-1503 (1999).
    • (1999) Science , vol.285 , pp. 1502-1503
    • Ridley, R.G.1


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