-
1
-
-
3242884054
-
Fine-scale phylogenetic architecture of a complex bacterial community
-
Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, Distel DL, Polz MF (2004) Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430:551-554
-
(2004)
Nature
, vol.430
, pp. 551-554
-
-
Acinas, S.G.1
Klepac-Ceraj, V.2
Hunt, D.E.3
Pharino, C.4
Ceraj, I.5
Distel, D.L.6
Polz, M.F.7
-
2
-
-
19044401068
-
Community genomics in microbial ecology and evolution
-
Allen EE, Banfield JF (2005) Community genomics in microbial ecology and evolution. Nat Rev Microbiol 3:489-98
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 489-498
-
-
Allen, E.E.1
Banfield, J.F.2
-
3
-
-
0033972854
-
Genetic variation: Molecular mechanisms and impact on microbial evolution
-
Arber W (2000) Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol Rev 24:1-7
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 1-7
-
-
Arber, W.1
-
4
-
-
0037307413
-
Signatures of natural selection in the human genome
-
Bamshad M, Wooding SP (2003) Signatures of natural selection in the human genome. Nat Rev Genet 4: 99-111
-
(2003)
Nat Rev Genet
, vol.4
, pp. 99-111
-
-
Bamshad, M.1
Wooding, S.P.2
-
6
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Beja O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP, Jovanovich SB, Gates CM, Feldman RA, Spudich JL, Spudich EN, DeLong EF (2000) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289:1902-1906
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Beja, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
DeLong, E.F.12
-
7
-
-
22544432221
-
Larger islands house more bacterial taxa
-
Bell T, Ager D, Song J-I, Newman JA, Thompson IP, Lilley AK, van der Gast CJ (2005) Larger islands house more bacterial taxa. Science 308:1884
-
(2005)
Science
, vol.308
, pp. 1884
-
-
Bell, T.1
Ager, D.2
Song, J.-I.3
Newman, J.A.4
Thompson, I.P.5
Lilley, A.K.6
van der Gast, C.J.7
-
8
-
-
6944240079
-
Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment
-
Bielawski JP, Dunn KA, Sabehi G, Beja O (2004) Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment. Proc Natl Acad Sci USA 101:14924-14829
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14829-14924
-
-
Bielawski, J.P.1
Dunn, K.A.2
Sabehi, G.3
Beja, O.4
-
9
-
-
8744289725
-
Long-chain N-acyltyrosine synthases from environmental DNA
-
Brady SF, Chao CJ, Clardy J (2004) Long-chain N-acyltyrosine synthases from environmental DNA. Appl Environ Microbiol 70:6865-6870
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6865-6870
-
-
Brady, S.F.1
Chao, C.J.2
Clardy, J.3
-
10
-
-
0015275944
-
Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature
-
Brock T, Brock K, Belly R, Weiss R (1972) Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Archiv fur Mikrobiologie 84:54-68
-
(1972)
Archiv Fur Mikrobiologie
, vol.84
, pp. 54-68
-
-
Brock, T.1
Brock, K.2
Belly, R.3
Weiss, R.4
-
11
-
-
2342462305
-
Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements
-
Brugger K TE, Redder P, Chen L, Garrett RA (2004) Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements. Biochem Soc Trans 32:179-183
-
(2004)
Biochem Soc Trans
, vol.32
, pp. 179-183
-
-
Brugger, K.T.E.1
Redder, P.2
Chen, L.3
Garrett, R.A.4
-
12
-
-
0034020551
-
Perspective: Sex, recombination, and the efficacy of selection - Was Weismann right?
-
Burt A (2000) Perspective: sex, recombination, and the efficacy of selection-was Weismann right? Evolution Int J Org Evolution 54:337-351
-
(2000)
Evolution Int J Org Evolution
, vol.54
, pp. 337-351
-
-
Burt, A.1
-
13
-
-
0002016595
-
Endemism and biodiversity of thermophilic cyanobacteria
-
Castenholz RW (1996) Endemism and biodiversity of thermophilic cyanobacteria. Nova Hedwigia 112:33-47
-
(1996)
Nova Hedwigia
, vol.112
, pp. 33-47
-
-
Castenholz, R.W.1
-
14
-
-
0034467820
-
Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil
-
Cho J-C, Tiedje JM (2000) Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil. Appl Environ Microbiol 66:5448-5456
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5448-5456
-
-
Cho, J.-C.1
Tiedje, J.M.2
-
15
-
-
0036407157
-
What Are Bacterial Species?
-
Cohan FM (2002) What Are Bacterial Species? Annu Rev Microbiol 56:457-487
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
16
-
-
0028173732
-
The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes
-
Cohan FM (1994) The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes. American Naturalist 143:965-986
-
(1994)
American Naturalist
, vol.143
, pp. 965-986
-
-
Cohan, F.M.1
-
17
-
-
0035046481
-
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B
-
Cooper VS, Schneider D, Blot M, Lenski RE (2001) Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. JBacteriol 183:2834-2841
-
(2001)
JBacteriol
, vol.183
, pp. 2834-2841
-
-
Cooper, V.S.1
Schneider, D.2
Blot, M.3
Lenski, R.E.4
-
18
-
-
19144366982
-
The metagenomics of soil
-
Daniel R (2005) The metagenomics of soil. Nat Rev Microbiol 3:470-478
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 470-478
-
-
Daniel, R.1
-
20
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong EF (2005) Microbial community genomics in the ocean. Nat Rev Microbiol 3:459-469
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 459-469
-
-
DeLong, E.F.1
-
21
-
-
0036790017
-
Microbial population genomics and ecology
-
DeLong EF (2002) Microbial population genomics and ecology. Curr Opin Microbiol 5:520-524
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 520-524
-
-
DeLong, E.F.1
-
22
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle WF (1999) Phylogenetic classification and the universal tree. Science 284:2124-2128.
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
23
-
-
0028341112
-
Tempo, mode the progenote and the universal root
-
Doolittle WF, Brown JR (1994) Tempo, mode the progenote and the universal root. Proc Natl Acad Sci USA 91:6721-6728
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6721-6728
-
-
Doolittle, W.F.1
Brown, J.R.2
-
24
-
-
0037188519
-
The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA)
-
Enright MC, Robinson DA, Randle G, Feil EJ, Grundmann H, Spratt BG (2002) The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA). Proc Nartl Acad Sci USA 99:7687-7692
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7687-7692
-
-
Enright, M.C.1
Robinson, D.A.2
Randle, G.3
Feil, E.J.4
Grundmann, H.5
Spratt, B.G.6
-
25
-
-
0035909914
-
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
-
Falush D, Kraft C, Taylor NS, Correa P, Foz JG, Achtman M, Suerbaum S (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA 98:15056-15061
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 15056-15061
-
-
Falush, D.1
Kraft, C.2
Taylor, N.S.3
Correa, P.4
Foz, J.G.5
Achtman, M.6
Suerbaum, S.7
-
26
-
-
0037853350
-
How Clonal is Staphylococcus aureus?
-
Feil EJ, Cooper JE, Grundmann H, Robinson DA, Enright MC, Berendt T, Peacock SJ, Smith JM, Murphy M, Spratt BG, Moore CE, Day NPJ (2003) How Clonal is Staphylococcus aureus? J Bacteriol 185:3307-3316
-
(2003)
J Bacteriol
, vol.185
, pp. 3307-3316
-
-
Feil, E.J.1
Cooper, J.E.2
Grundmann, H.3
Robinson, D.A.4
Enright, M.C.5
Berendt, T.6
Peacock, S.J.7
Smith, J.M.8
Murphy, M.9
Spratt, B.G.10
Moore, C.E.11
Day, N.P.J.12
-
27
-
-
0034128665
-
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data
-
Feil EJ, Smith JM, Enright MC, Spratt BG (2000) Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. Genetics 154:1439-1450
-
(2000)
Genetics
, vol.154
, pp. 1439-1450
-
-
Feil, E.J.1
Smith, J.M.2
Enright, M.C.3
Spratt, B.G.4
-
28
-
-
0034769889
-
Recombination and the population structures of bacterial pathogens
-
Feil EJ, Spratt BG (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55:561-590
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 561-590
-
-
Feil, E.J.1
Spratt, B.G.2
-
29
-
-
0033616769
-
Evolution of microbial diversity during prolonged starvation
-
Finkel SE, Kolter R (1999) Evolution of microbial diversity during prolonged starvation. Proc Natl Acad Sci USA 96:4023-4027
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4023-4027
-
-
Finkel, S.E.1
Kolter, R.2
-
30
-
-
0037052531
-
Global Dispersal of free-living microbial eukaryote species
-
Finlay BJ (2002) Global Dispersal of free-living microbial eukaryote species. Science 296:1061-1063
-
(2002)
Science
, vol.296
, pp. 1061-1063
-
-
Finlay, B.J.1
-
31
-
-
0001122789
-
The distribution of gene ratios for rare mutations
-
Fisher RA (1930) The distribution of gene ratios for rare mutations. Proc Royal Soc London: Biol Sci 50: 205-220
-
(1930)
Proc Royal Soc London: Biol Sci
, vol.50
, pp. 205-220
-
-
Fisher, R.A.1
-
33
-
-
0029786916
-
Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium
-
Garcia-Pichel F, Prufert-Bebout L, Muyzer G (1996) Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium. Appl Environ Microbiol 62:3284-3291
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3284-3291
-
-
Garcia-Pichel, F.1
Prufert-Bebout, L.2
Muyzer, G.3
-
34
-
-
23944437942
-
Opinion: Re-evaluating prokaryotic species
-
Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, Thompson FL, Swings J (2005) Opinion: re-evaluating prokaryotic species. Nat Rev Microbiol 3: 733-739
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
Feil, E.J.6
Stackebrandt, E.7
Van de Peer, Y.8
Vandamme, P.9
Thompson, F.L.10
Swings, J.11
-
36
-
-
15844412621
-
Sex increases the efficacy of natural selection in experimental yeast populations
-
Goddard MR, Godfray HCJ, Burt A (2005) Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434:636-640
-
(2005)
Nature
, vol.434
, pp. 636-640
-
-
Goddard, M.R.1
Godfray, H.C.J.2
Burt, A.3
-
37
-
-
16244378569
-
The origin and evolution of human pathogens
-
Groisman EA, Casadesus J (2005) The origin and evolution of human pathogens. Mol Microbiol 56:1-7
-
(2005)
Mol Microbiol
, vol.56
, pp. 1-7
-
-
Groisman, E.A.1
Casadesus, J.2
-
38
-
-
0141592799
-
Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea
-
Hallam SJ, Girguis PR, Preston CM, Richardson PM, DeLong EF (2003) Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Appl Environ Microbiol 69: 5483-5491
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5483-5491
-
-
Hallam, S.J.1
Girguis, P.R.2
Preston, C.M.3
Richardson, P.M.4
DeLong, E.F.5
-
40
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68:669-685
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
41
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
-
Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 5:R245-249
-
(1998)
Chem Biol
, vol.5
-
-
Handelsman, J.1
Rondon, M.R.2
Brady, S.F.3
Clardy, J.4
Goodman, R.M.5
-
42
-
-
0037133168
-
Amplification-mutagenesis: Evidence that "directed" Adaptive mutation and general hypermutability result from growth with a selected gene amplification
-
Hendrickson H, Slechta ES, Bergthorsson U, Andersson DI, Roth JR (2002) Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification. Proc Natl Acad Sci USA 99:2164-2169
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2164-2169
-
-
Hendrickson, H.1
Slechta, E.S.2
Bergthorsson, U.3
Andersson, D.I.4
Roth, J.R.5
-
43
-
-
0032863699
-
Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate
-
Henne A, Daniel R, Schmitz RA, Gottschalk G (1999) Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate. Appl Environ Microbiol 65:3901-3907
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3901-3907
-
-
Henne, A.1
Daniel, R.2
Schmitz, R.A.3
Gottschalk, G.4
-
44
-
-
0032870181
-
Changes in cell size and DNA content in Sulfolobus cultures during dilution and temperature shift experiments
-
Hjort K, Bernander R (1999) Changes in cell size and DNA content in Sulfolobus cultures during dilution and temperature shift experiments. J Bacteriol 181:5669-5675
-
(1999)
J Bacteriol
, vol.181
, pp. 5669-5675
-
-
Hjort, K.1
Bernander, R.2
-
46
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH, Jr. (2004) Mobile elements: drivers of genome evolution. Science 303:1626-1632
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
48
-
-
0025970149
-
Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence
-
Kreitman M, Hudson RR (1991) Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence. Genetics 127:565-582
-
(1991)
Genetics
, vol.127
, pp. 565-582
-
-
Kreitman, M.1
Hudson, R.R.2
-
49
-
-
0023988195
-
Genomic mapping by fingerprinting random clones: A mathematical analysis
-
Lander ES, Waterman MS (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2:231-239
-
(1988)
Genomics
, vol.2
, pp. 231-239
-
-
Lander, E.S.1
Waterman, M.S.2
-
50
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence JG, Ochman H (1997) Amelioration of bacterial genomes: rates of change and exchange. J Molec Evol 44:383-397.
-
(1997)
J Molec Evol
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
51
-
-
0028365256
-
Dynamics of adaptation and diversification: A 10,000-generation experiment with bacterial populations
-
Lenski RE, Travisano M (1994) Dynamics of adaptation and diversification: A 10,000-generation experiment with bacterial populations. Proc Natl Acad Sci USA 91:6808-6814
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6808-6814
-
-
Lenski, R.E.1
Travisano, M.2
-
52
-
-
0019619751
-
Periodic selection, infectious gene exchange and the genetic structure of Escherichia coli populations
-
Levin BR (1981) Periodic selection, infectious gene exchange and the genetic structure of Escherichia coli populations. Genetics 99:1-23
-
(1981)
Genetics
, vol.99
, pp. 1-23
-
-
Levin, B.R.1
-
53
-
-
0003421005
-
-
Sunderland, MA, Sinauer Associates, Inc
-
Li W (1997) Molecular Evolution. Sunderland, MA, Sinauer Associates, Inc.
-
(1997)
Molecular Evolution
-
-
Li, W.1
-
54
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS (2003) The origins of genome complexity. Science 302:1401-1404
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
56
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden MCJ, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, Zhang Q, Zhou J, Zurth K, Caugant DA, Feavers IM, Achtman M, Spratt BG (1998) Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95: 3140-3145
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.8
Zurth, K.9
Caugant, D.A.10
Feavers, I.M.11
Achtman, M.12
Spratt, B.G.13
-
57
-
-
0344931878
-
Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity
-
Majewski J, Cohan FM (1999) Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity. Genetics 152:1459-1474
-
(1999)
Genetics
, vol.152
, pp. 1459-1474
-
-
Majewski, J.1
Cohan, F.M.2
-
58
-
-
0031930791
-
The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus
-
Majewski J, Cohan FM (1998) The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus. Genetics 148:13-18
-
(1998)
Genetics
, vol.148
, pp. 13-18
-
-
Majewski, J.1
Cohan, F.M.2
-
59
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald H, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, H.1
Kreitman, M.2
-
60
-
-
0033775190
-
Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus
-
Miller SR, Castenholz RW (2000) Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus. Appl Environ Microbiol 66:4222-4229
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4222-4229
-
-
Miller, S.R.1
Castenholz, R.W.2
-
61
-
-
0242386452
-
Tracing the evolution of gene loss in obligate bacterial symbionts
-
Moran NA (2003) Tracing the evolution of gene loss in obligate bacterial symbionts. Curr Opin Microbiol 6: 512-518
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 512-518
-
-
Moran, N.A.1
-
62
-
-
27944474033
-
Selectionism and Neutralism in Molecular Evolution
-
doi:10.1093/molbev/msi242
-
Nei M (2005) Selectionism and Neutralism in Molecular Evolution. Mol Biol Evol doi:10.1093/molbev/msi242
-
(2005)
Mol Biol Evol
-
-
Nei, M.1
-
63
-
-
29244466844
-
Metabolism and genomics: Adventures derived from complete genome sequencing
-
Nelson KE, Methé B (2005) Metabolism and genomics: adventures derived from complete genome sequencing. Rev Mineral Geochem 59:279-294
-
(2005)
Rev Mineral Geochem
, vol.59
, pp. 279-294
-
-
Nelson, K.E.1
Methé, B.2
-
64
-
-
24744468387
-
Bacterial genome size reduction by experimental evolution
-
Nilsson AI, Koskiniemi S, Eriksson S, Kugelberg E, Hinton JCD, Andersson DI (2005) Bacterial genome size reduction by experimental evolution. Proc Natl Acad Sci USA 102:12112-12116
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12112-12116
-
-
Nilsson, A.I.1
Koskiniemi, S.2
Eriksson, S.3
Kugelberg, E.4
Hinton, J.C.D.5
Andersson, D.I.6
-
65
-
-
0022462668
-
Microbial ecology and evolution: A ribosomal RNA approach
-
Olsen GJ, Lane DJ, Giovannoni SJ, Pace NR, Stahl DA (1986) Microbial ecology and evolution: a ribosomal RNA approach. Annu Rev Microbiol 40:337-365
-
(1986)
Annu Rev Microbiol
, vol.40
, pp. 337-365
-
-
Olsen, G.J.1
Lane, D.J.2
Giovannoni, S.J.3
Pace, N.R.4
Stahl, D.A.5
-
66
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace N (1997) A molecular view of microbial diversity and the biosphere. Science 276:730-734
-
(1997)
Science
, vol.276
, pp. 730-734
-
-
Pace, N.1
-
67
-
-
0028164043
-
Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis
-
Palenik B (1994) Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis. Appl Environ Microbiol 60:3212-3219
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 3212-3219
-
-
Palenik, B.1
-
68
-
-
0034073254
-
Protein-coding genes as molecular markers for ecologically distinct populations: The case of two Bacillus species
-
Palys T, Berger E, Mitrica I, Nakamura LK, Cohan FM (2000) Protein-coding genes as molecular markers for ecologically distinct populations: The case of two Bacillus species. Int J Syst Evol Microbiol 50: 1021-1028
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 1021-1028
-
-
Palys, T.1
Berger, E.2
Mitrica, I.3
Nakamura, L.K.4
Cohan, F.M.5
-
69
-
-
0030870289
-
Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
-
Palys T, Nakamura LK, Cohan FM (1997) Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data. Int J Syst Bacteriol 47:1145-1156
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 1145-1156
-
-
Palys, T.1
Nakamura, L.K.2
Cohan, F.M.3
-
72
-
-
2442551475
-
The importance of physical isolation to microbial diversification
-
Papke RT, Ward DM (2004) The importance of physical isolation to microbial diversification. FEMS Microbial Ecol 48:293-303
-
(2004)
FEMS Microbial Ecol
, vol.48
, pp. 293-303
-
-
Papke, R.T.1
Ward, D.M.2
-
73
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram RJ, VerBerkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield, JF (2005) Community proteomics of a natural microbial biofilm. Science 308:1915-1920
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
VerBerkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake, R.C.6
Shah, M.7
Hettich, R.L.8
Banfield, J.F.9
-
75
-
-
0042878464
-
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
-
Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, Arellano A, Coleman M, Hauser L, Hess WR, Johnson ZI, Land M, Lindell D, Post AF, Regala W, Shah M, Shaw SL, Steglich C, Sullivan MB, Ting CS, Tolonen A, Webb EA, Zinser ER, Chisholm SW (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424:1042-1047
-
(2003)
Nature
, vol.424
, pp. 1042-1047
-
-
Rocap, G.1
Larimer, F.W.2
Lamerdin, J.3
Malfatti, S.4
Chain, P.5
Ahlgren, N.A.6
Arellano, A.7
Coleman, M.8
Hauser, L.9
Hess, W.R.10
Johnson, Z.I.11
Land, M.12
Lindell, D.13
Post, A.F.14
Regala, W.15
Shah, M.16
Shaw, S.L.17
Steglich, C.18
Sullivan, M.B.19
Ting, C.S.20
Tolonen, A.21
Webb, E.A.22
Zinser, E.R.23
Chisholm, S.W.24
more..
-
76
-
-
18844481269
-
Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon MR, August PR, Bettermann AD, Brady SF, Grossman TH, Liles MR, Loiacono, KA, Lynch BA, MacNeil IA, Minor C, Tiong CL, Gilman M, Osburne MS, Clardy J, Handelsman J, Goodman RM (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl Environ Microbiol 66:2541-2547
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
Brady, S.F.4
Grossman, T.H.5
Liles, M.R.6
Loiacono, K.A.7
Lynch, B.A.8
MacNeil, I.A.9
Minor, C.10
Tiong, C.L.11
Gilman, M.12
Osburne, M.S.13
Clardy, J.14
Handelsman, J.15
Goodman, R.M.16
-
77
-
-
0016256082
-
IS2, a genetic element for turn-off and turn-on of gene activity in E coli
-
Saedler H, Reif HJ, Hu S, Davidson N (1974) IS2, a genetic element for turn-off and turn-on of gene activity in E. coli. Mol Gen Genet 132:265-289
-
(1974)
Mol Gen Genet
, vol.132
, pp. 265-289
-
-
Saedler, H.1
Reif, H.J.2
Hu, S.3
Davidson, N.4
-
78
-
-
1642319596
-
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
-
Sarkar SF, Guttman DS (2004) Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70:1999-2012
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1999-2012
-
-
Sarkar, S.F.1
Guttman, D.S.2
-
79
-
-
0031680049
-
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper C, Delong EF, Preston CM, Feldman RA, Wu K-Y, Swanson RV (1998) Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol 180:5003-5009.
-
(1998)
J Bacteriol
, vol.180
, pp. 5003-5009
-
-
Schleper, C.1
Delong, E.F.2
Preston, C.M.3
Feldman, R.A.4
Wu, K.-Y.5
Swanson, R.V.6
-
81
-
-
0025860931
-
Analysis of a marine picoplankton community by 16s ribosomal-RNA gene cloning and sequencing
-
Schmidt TM, Delong EF, Pace NR (1991) Analysis of a marine picoplankton community by 16s ribosomal-RNA gene cloning and sequencing. 173:4371-4378
-
(1991)
, vol.173
, pp. 4371-4378
-
-
Schmidt, T.M.1
Delong, E.F.2
Pace, N.R.3
-
82
-
-
0033786720
-
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements
-
Schneider D, Duperchy E, Coursange E, Lenski RE, Blot M (2000) Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics 156:477-488
-
(2000)
Genetics
, vol.156
, pp. 477-488
-
-
Schneider, D.1
Duperchy, E.2
Coursange, E.3
Lenski, R.E.4
Blot, M.5
-
83
-
-
2942632968
-
Dynamics of insertion sequence elements during experimental evolution of bacteria
-
Schneider D, Lenski RE (2004) Dynamics of insertion sequence elements during experimental evolution of bacteria. Res Microbiol 155:319-327
-
(2004)
Res Microbiol
, vol.155
, pp. 319-327
-
-
Schneider, D.1
Lenski, R.E.2
-
84
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin M, Maddison WP (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123:603-614
-
(1989)
Genetics
, vol.123
, pp. 603-614
-
-
Slatkin, M.1
Maddison, W.P.2
-
85
-
-
0001931821
-
Do Bacteria have population genetics?
-
Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Cambridge University Press, New York
-
Smith JM (1995) Do Bacteria have population genetics? In: SGM Symposium 52: Population Genetics of Bacteria. Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Cambridge University Press, New York, p. 1-12
-
(1995)
SGM Symposium 52: Population Genetics of Bacteria
, pp. 1-12
-
-
Smith, J.M.1
-
87
-
-
0034542564
-
The evolution of mutation rates: Separating causes from consequences
-
Sniegowski PD, Gerrish PJ, Johnson T, Shaver A (2000) The evolution of mutation rates: separating causes from consequences. Bioessays 22:1057-1066
-
(2000)
Bioessays
, vol.22
, pp. 1057-1066
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Johnson, T.3
Shaver, A.4
-
88
-
-
0036417675
-
Does experimental evolution reflect patterns in natural populations? E.coli strains from long-term studies compared with wild isolates
-
Souza V, Travisano M, Turner PE, Eguiarte LE (2002) Does experimental evolution reflect patterns in natural populations? E.coli strains from long-term studies compared with wild isolates. Antonie van Leeuwenhoek 81:143-153
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 143-153
-
-
Souza, V.1
Travisano, M.2
Turner, P.E.3
Eguiarte, L.E.4
-
89
-
-
0034798494
-
The relative contributions of recombination and point mutation to the diversification of bacterial clones
-
Spratt BG, Hanage WP, Feil EJ (2001) The relative contributions of recombination and point mutation to the diversification of bacterial clones. Curr Opin Microbiol 4:602-606
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 602-606
-
-
Spratt, B.G.1
Hanage, W.P.2
Feil, E.J.3
-
90
-
-
0032697215
-
Poles apart: Biodiversity and biogeography of sea ice bacteria
-
Staley JT, Gosink JJ (1999) Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189-215
-
(1999)
Annu Rev Microbiol
, vol.53
, pp. 189-215
-
-
Staley, J.T.1
Gosink, J.J.2
-
91
-
-
0030023659
-
Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
-
Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178:591-599
-
(1996)
J Bacteriol
, vol.178
, pp. 591-599
-
-
Stein, J.L.1
Marsh, T.L.2
Wu, K.Y.3
Shizuya, H.4
DeLong, E.F.5
-
92
-
-
0035091072
-
Allelic diversity and recombination in Campylobacter jejuni
-
Suerbaum S, Lohrengel M, Sonnevend A, Ruberg F, Kist M (2001) Allelic diversity and recombination in Campylobacter jejuni. J Bacteriol 183:2553-2559
-
(2001)
J Bacteriol
, vol.183
, pp. 2553-2559
-
-
Suerbaum, S.1
Lohrengel, M.2
Sonnevend, A.3
Ruberg, F.4
Kist, M.5
-
93
-
-
27844532766
-
Free recombination within Helicobacter pylori
-
Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, Kunstmann E, Dyrek I, Achtman M (1998) Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 43:A7.
-
(1998)
Proc Natl Acad Sci USA
, vol.43
-
-
Suerbaum, S.1
Smith, J.M.2
Bapumia, K.3
Morelli, G.4
Smith, N.H.5
Kunstmann, E.6
Dyrek, I.7
Achtman, M.8
-
94
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V, Hunt DE, Benoit J, Sarma-Rupavtarm R, Distel DL, Polz MF (2005) Genotypic diversity within a natural coastal bacterioplankton population. Science 307: 1311-1313
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
Hunt, D.E.5
Benoit, J.6
Sarma-Rupavtarm, R.7
Distel, D.L.8
Polz, M.F.9
-
95
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richarson PM, Solovyev VV, Rubin E, Rokhsar DS, Banfield JF (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richarson, P.M.6
Solovyev, V.V.7
Rubin, E.8
Rokhsar, D.S.9
Banfield, J.F.10
-
96
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y-H, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.-H.22
Smith, H.O.23
more..
-
97
-
-
18844397544
-
Global divergence of microbial genome sequences mediated by propagating fronts
-
Vetsigian K, Goldenfeld N (2005) Global divergence of microbial genome sequences mediated by propagating fronts. Proc Natl Acad Sci USA 102:7332-7337
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 7332-7337
-
-
Vetsigian, K.1
Goldenfeld, N.2
-
98
-
-
29244480200
-
On the tendency of varieties to depart indefinitely from the original type
-
London, Macmillan
-
Wallace AR (1870) On the tendency of varieties to depart indefinitely from the original type. In: Natural Selection. London, Macmillan, 40-41
-
(1870)
Natural Selection
, pp. 40-41
-
-
Wallace, A.R.1
-
99
-
-
27844577665
-
Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus 'islandicus'
-
Whitaker RJ, Grogan DW, Taylor JW (2005) Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus 'islandicus'. Molec Biol Evol 22:1-8
-
(2005)
Molec Biol Evol
, vol.22
, pp. 1-8
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
100
-
-
0042242559
-
Geographic barriers isolated endernic population of hyperthermophilic archaea
-
Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolated endernic population of hyperthermophilic archaea. Science 301:976-978
-
(2003)
Science
, vol.301
, pp. 976-978
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
101
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya
-
Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya. Proc Natl Acad Sci USA 87:4576-4579
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
102
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl. Biosci 13:555-556
-
(1997)
Comput Appl. Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
103
-
-
2942650309
-
Escherichia coli evolution during stationary phase
-
Zinser ER, Kolter R (2004) Escherichia coli evolution during stationary phase. Res Microbiol 155:328-336
-
(2004)
Res Microbiol
, vol.155
, pp. 328-336
-
-
Zinser, E.R.1
Kolter, R.2
-
104
-
-
0041817649
-
Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci
-
Zinser ER, Schneider D, Blot M, Kolter R (2003) Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci. Genetics 164:1271-1277
-
(2003)
Genetics
, vol.164
, pp. 1271-1277
-
-
Zinser, E.R.1
Schneider, D.2
Blot, M.3
Kolter, R.4
|