Molecular classification of papillary thyroid carcinoma: Distinct BRAF, RAS, and RET/PTC mutation-specific gene expression profiles discovered by DNA microarray analysis

Oncogene

Volumn 24, Issue 44, 2005, Pages 6646-6656

  Giordano, Thomas J ^a   Kuick, Rork ^a   Thomas, Dafydd G ^a   Misek, David E ^a   Vinco, Michelle ^a   Sanders, Donita ^a   Zhu, Zhaowen ^b   Ciampi, Raffaele ^b   Roh, Michael ^a   Shedden, Kerby ^a   Gauger, Paul ^a   Doherty, Gerard ^a   Thompson, Norman W ^a   Hanash, Samir ^a   Koenig, Ronald J ^a   Nikiforov, Yuri E ^b  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

Author keywords

Activating mutation; DNA microarray; Molecular profiling; RET RAS RAF MAPK signaling pathway; Thyroid cancer

Indexed keywords

ARTICLE; DNA MICROARRAY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; GENE MUTATION; GENE NUMBER; GENOTYPE; HUMAN; HUMAN TISSUE; IMMUNE RESPONSE; IMMUNOHISTOCHEMISTRY; MORPHOLOGY; POINT MUTATION; PREDICTION; PRIORITY JOURNAL; SEPARATION TECHNIQUE; SIGNAL TRANSDUCTION; THYROID CARCINOMA;

BASE SEQUENCE; DNA PRIMERS; GENE EXPRESSION PROFILING; GENES, RAS; HUMANS; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION, FLUORESCENCE; IODIDE PEROXIDASE; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ONCOGENE PROTEINS; PROTO-ONCOGENE PROTEINS B-RAF; PROTO-ONCOGENE PROTEINS C-RET; RECEPTOR PROTEIN-TYROSINE KINASES; RECEPTORS, CELL SURFACE; THYROID NEOPLASMS; TRANSCRIPTION, GENETIC;

EID: 27144556185     PISSN: 09509232     EISSN: 14765594     Source Type: Journal    
DOI: 10.1038/sj.onc.1208822     Document Type: Article

References (83)

1. Aldred MA, Huang Y, Liyanarachchi S, Pellegata NS, Gimm O, Jhiang S, Davuluri RV, de la Chapelle A and Eng C. (2004). J. Clin. Oncol., 22, 3531-3539.
2. Allander SV, Nupponen NN, Ringner M, Hosteller G, Maher GW, Goldberger N, Chen Y, Carpten J, Elkahloun AG and Meltzer PS. (2001). Cancer Res., 61, 8624-8628.
3. Baker Jr JR. (1995). J. Clin. Endocrinol. Metab., 80, 3419-3420.
4. Balmain A, Gray J and Ponder B. (2003). Nat. Genet., 33 (Suppl), 238-244.
5. Barden CB, Shister KW, Zhu B, Guiter G, Greenblatt DY, Zeiger MA and Fahey III TJ. (2003). Clin. Cancer Res., 9, 1792-1800.
6. Batistatou A, Zolota V and Scopa CD. (2002). Endocr. Pathol., 13, 111-115.
7. Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen G, Gharib TG, Thomas DG, Lizyness ML, Kuick R, Hayasaka S, Taylor JM, Iannettoni MD, Orringer MB and Hanash S. (2002). Nat. Med., 8, 816-824.
8. Begum S, Rosenbaum E, Henrique R, Cohen Y, Sidransky D and Westra WH. (2004). Mod. Pathol., 17, 1359-1363.
9. Bertucci F, Borie N, Ginestier C, Groulet A, Charafe-Jauffret E, Adelaide J, Geneix J, Bachelart L, Finetti P, Koki A, Hermitte F, Hassoun J, Debono S, Viens P, Fert V, Jacquemier J and Birnbaum D. (2004). Oncogene, 23, 2564-2575.
10. Bongarzone I and Pierotti MA. (2003). Tumori, 89, 514-516.
11. Bongarzone I, Pierotti MA, Monzini N, Mondellini P, Manenti G, Donghi R, Pilotti S, Grieco M, Santoro M and Fusco A. (1989). Oncogene, 4, 1457-1462.
12. Bounacer A, Wicker R, Caillou B, Cailleux AF, Sarasin A, Schlumberger M and Suarez HG. (1997). Oncogene, 15, 1263-1273.
13. Capella G, Matias-Guiu X, Ampudia X, de Leiva A, Perucho M and Prat J. (1996). Diagn. Mol. Pathol., 5, 45-52.
14. Carlomagno F, Vitagliano D, Guida T, Basolo F, Castellone MD, Melillo RM, Fusco A and Santoro M. (2003). J. Clin. Endocrinol. Metab., 88, 1897-1902.
15. Carlomagno F, Vitagliano D, Guida T, Ciardiello F, Tortora G, Vecchio G, Ryan AJ, Fontanini G, Fusco A and Santoro M. (2002). Cancer Res., 62, 7284-7290.
16. Chevillard S, Ugolin N, Vielh P, Ory K, Levalois C, Elliott D, dayman GL and El-Naggar AK. (2004). Clin. Cancer Res., 10, 6586-6597.
17. Ciampi R, Knauf JA, Kerler R, Gandhi M, Zhu Z, Nikiforova MN, Rabes HM, Fagin JA and Nikiforov YE. (2005). J. Clin. Invest., 115, 94-101.
18. Ciro M, Bracken AP and Helin K. (2003). Curr. Opin. Cell Biol., 15, 213-220.
19. Cohen Y, Xing M, Mambo E, Guo Z, Wu G, Trink B, Beller U, Westra WH, Ladenson PW and Sidransky D. (2003). J. Natl. Cancer Inst., 95, 625-627.
20. Cuccuru G, Lanzi C, Cassinelli G, Pratesi G, Tortoreto M, Petrangolini G, Seregni E, Martinetti A, Laccabue D, Zanchi C and Zunino F. (2004). J. Natl. Cancer Inst., 96, 1006-1014.
21. Dancey JE. (2004). Cancer Cell, 5, 411-415.
22. De Micco C. (2003). Am. J. Clin. Pathol., 120, 803 (author reply 804).
23. DeGroot LJ, Kaplan EL, McCormick M and Straus FH. (1990). J. Clin. Endocrinol Metab., 71, 414-424.
24. DeLellis RA, Lloyd RV, Heitz PU and Eng C (eds.). (2004). Tumours of Endocrine Organs. IARC Press: Lyon.
25. Dobashi Y, Sugimura H, Sakamoto A, Mernyei M, Mori M, Oyama T and Machinami R. (1994). Diagn. Mol. Pathol., 3, 9-14.
26. Donghi R, Longoni A, Pilotti S, Michieli P, Della Porta G and Pierotti MA. (1993). J. Clin. Invest., 91, 1753-1760.
27. Ezzat S, Zheng L, Kolenda J, Safarian A, Freeman JL and Asa SL. (1996). Thyroid, 6, 409-416.
28. Fagin JA. (2002). Endocrinology, 143, 2025-2028.
29. Finley DJ, Arora N, Zhu B, Gallagher L and Fahey III TJ. (2004). J. Clin. Endocrinol. Metab., 89, 3214-3223.
30. Frattini M, Ferrario C, Bressan P, Balestra D, De Cecco L, Mondellini P, Bongarzone I, Collini P, Gariboldi M, Pilotti S, Pierotti MA and Greco A. (2004). Oncogene, 23, 7436-7440.
31. Frisk T, Foukakis T, Dwight T, Lundberg J, Hoog A, Wallin G, Eng C, Zedenius J and Larsson C. (2002). Genes Chromosomes Cancer, 35, 74-80.
32. Giordano TJ, Shedden KA, Schwartz DR, Kuick R, Taylor JM, Lee N, Misek DE, Greenson JK, Kardia SL, Beer DG, Rennert G, Cho KR, Gruber SB, Fearon ER and Hanash S. (2001). Am. J. Pathol., 159, 1231-1238.
33. Giordano TJ, Thomas DG, Kuick R, Lizyness M, Misek DE, Smith AL, Sanders D, Aljundi RT, Gaueer PG, Thompson NW, Taylor JM and Hanash SM. (2003). Am. J. Pathol., 162, 521-531.
34. Giuffrida D and Gharib H. (2000). Ann. Oncol., 11, 1083-1089.
35. Hanash S. (2004). Nat. Rev. Cancer, 4, 638-644.
36. Hawthorn L, Stein L, Varma R, Wiseman S, Loree T and Tan D. (2004). Head Neck, 26, 1069-1083.
37. Hedenfalk I, Duggan D, Chen Y, Radmacher M, Bittner M, Simon R, Meltzer P, Gusterson B, Esteller M, Kallioniemi OP, Wilfond B, Borg A and Trent J. (2001). N. Engl. J. Med., 344, 539-548.
38. Ho CL, Kurman RJ, Dehari R, Wang TL and Shih Ie M. (2004). Cancer Res., 64, 6915-6918.
39. Huang Y, Prasad M, Lemon WJ, Hampel H, Wright FA, Kornacker K, LiVolsi V, Frankel W, Kloos RT, Eng C, Pellegata NS and de la Chapelle A. (2001). Proc. Natl. Acad. Sci. USA, 98, 15044-15049.
40. Hundahl SA, Fleming ID, Fremgen AM and Menck HR. (1998). Cancer, 83, 2638-2648.
41. Jazaeri AA, Yee CJ, Sotiriou C, Brantley KR, Boyd J and Liu ET. (2002). J. Natl. Cancer Inst., 94, 990-1000.
42. Juhasz F and Fand NR. (1996). J. Clin. Endocrinol. Metab., 81, 4175-4176.
43. Karasarides M, Chiloeches A, Hayward R, Niculescu-Duvaz D, Scanlon I, Friedlos F, Ogilvie L, Hedley D, Martin J, Marshall CJ, Springer CJ and Marais R. (2004). Oncogene, 23, 6292-6298.
44. Karga H, Lee JK, Vickery Jr AL, Thor A, Gaz RD and Jameson JL. (1991). J. Clin. Endocrinol. Metab., 73, 832-836.
45. Kimura ET, Nikiforova MN, Zhu Z, Knauf JA, Nikiforov YE and Fagin JA. (2003). Cancer Res., 63, 1454-1457.
46. LiVolsi VA. (1996). Clin. Oncol. (R. Coll. Radiol.), 8, 281-288.
47. Lloyd RV, Erickson LA, Casey MB, Lam KY, Lohse CM, Asa SL, Chan JK, DeLellis RA, Harach HR, Kakudo K, LiVolsi VA, Rosai J, Sebo TJ, Sobrinho-Simoes M, Wenig BM and Lae ME. (2004). Am. J. Surg. Pathol., 28, 1336-1340.
48. Lowinger TB, Riedl B, Dumas J and Smith RA. (2002). Curr. Pharm. Des., 8, 2269-2278.
49. Luo J, Isaacs WB, Trent JM and Duggan DJ. (2003). Cancer Invest., 21, 937-949.
50. Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, Harris PL, Haserlat SM, Supko JG, Haluska FG, Louis DN, Christiani DC, Settleman J and Haber DA. (2004). N. Engl. J. Med., 350, 2129-2139.
51. Lyons JF, Wilhelm S, Hibner B and Bollag G. (2001). Endocr. Relat. Cancer, 8, 219-225.
52. Machens A, Holzhausen HJ, Lautenschlager C and Dralle H. (2004). Langenbecks Arch. Surg., 389, 278-282.
53. Mazzanti C, Zeiger MA, Costouros NG, Umbricht C, Westra WH, Smith D, Somervell H, Bevilacqua G, Alexander HR, Libutti SK and Costourous N. (2004). Cancer Res., 64, 2898-2903.
54. Miyagi E, Braga-Basaria M, Hardy E, Vasko V, Burman KD, Jhiang S, Saji M and Ringel MD. (2004). Mol. Carcinogen., 41, 98-107.
55. Moretti F, Nanni S and Pontecorvi A. (2000). Baillieres Best Pract. Res. Clin. Endocrinol. Metab., 14, 517-539.
56. Namba H, Rubin SA and Fagin JA. (1990). Mol. Endocrinol., 4, 1474-1479.
57. Nardone HC, Ziober AF, LiVolsi VA, Mandel SJ, Baloch ZW, Weber RS, Mick R and Ziober BL. (2003). Cancer, 98, 1386-1393.
58. Nikiforov YE. (2002). Endocr. Pathol., 13, 3-16.
59. Nikiforova MN, Caudill CM, Biddinger P and Nikiforov YE. (2002). Int. J. Surg. Pathol., 10, 15-22.
60. Nikiforova MN, Kimura ET, Gandhi M, Biddinger PW, Knauf JA, Basolo F, Zhu Z, Giannini R, Salvatore G, Fusco A, Santoro M, Fagin JA and Nikiforov YE. (2003). J. Clin. Endocrinol. Metab., 88, 5399-5404.
61. Paez JG, Janne PA, Lee JC, Tracy S, Greulich H, Gabriel S, Herman P, Kaye FJ, Lindeman N, Boggon TJ, Naoki K, Sasaki H, Fujii Y, Eck MJ, Sellers WR, Johnson BE and Meyerson M. (2004). Science, 304, 1497-1500.
62. Pavey S, Johansson P, Packer L, Taylor J, Stark M, Pollock PM, Walker GJ, Boyle GM, Harper U, Cozzi SJ, Hansen K, Yudt L, Schmidt C, Hersey P, Ellem KA, O'Rourke MG, Parsons PG, Meltzer P, Ringner M and Hayward NK. (2004). Oncogene, 23, 4060-4067.
63. Prendiville S, Burman KD, Ringel MD, Shmookler BM, Deeb ZE, Wolfe K, Azumi N, Wartofsky L and Sessions RB. (2000). Otolaryngol. Head Neck Surg., 122, 352-357.
64. Rabes HM, Demidchik EP, Sidorow JD, Lengfelder E, Beimfohr C, Hoelzel D and Klugbauer S. (2000). Clin. Cancer Res., 6, 1093-1103.
65. Ruco LP, Stoppacciaro A, Ballarini F, Prat M and Scarpino S. (2001). J. Pathol., 194, 4-8.
66. Santoro M, Carlomagno F, Hay ID, Herrmann MA, Grieco M, Melillo R, Pierotti MA, Bongarzone I, Della Porta G, Berger N, Peix JL, Paulin C, Fabien N, Vecchio G, Jenkins RB and Fusco A. (1992). J. Clin. Invest., 89, 1517-1522.
67. Sawyers CL. (2003). Genes Dev., 17, 2998-3010.
68. Schaefer KL, Brachwitz K, Wai DH, Braun Y, Diallo R, Korsching E, Eisenacher M, Voss R, Van Valen F, Baer C, Selle B, Spahn L, Liao SK, Lee KA, Hogendoorn PC, Reifenberger G, Gabbert HE and Poremba C. (2004). Cancer Res., 64, 3395-3405.
69. Schwartz DR, Kardia SL, Shedden KA, Kuick R, Michailidis G, Taylor JM, Misek DE, Wu R, Zhai Y, Darrah DM, Reed H, Ellenson LH, Giordano TJ, Fearon ER, Hanash SM and Cho KR. (2002). Cancer Res., 62, 4722-4729.
70. Segev DL, Umbricht C and Zeiger MA. (2003). Surg. Oncol., 12, 69-90.
71. Singer G, Oldt III R, Cohen Y, Wang BG, Sidransky D, Kurman RJ and Shih Ie M. (2003). J. Natl. Cancer Inst., 95, 484-486.
72. Smanik PA, Fithian LJ and Jhiang SM. (1994). Biochem. Biophys. Res. Commun., 198, 948-954.
73. Soares P, Trovisco V, Rocha AS, Lima J, Castro P, Preto A, Maximo V, Botelho T, Seruca R and Sobrinho-Simoes M. (2003). Oncogens, 22, 4578-4580.
74. Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein Lonning P and Borresen-Dale AL. (2001). Proc. Natl. Acad. Sci. USA, 98, 10869-10874.
75. Stone M. (1977). Biometrika, 64, 29-38.
76. Suarez HG, Du Villard JA, Caillou B, Schlumberger M, Tubiana M, Parmentier C and Monier R. (1988). Oncogene, 2, 403-406.
77. Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, Mesirov J, Golub TR and Jacks T. (2005). Nat. Genet., 37, 48-55.
78. Tanaka T, Umeki K, Yamamoto I, Sugiyama S, Noguchi S and Ohtaki S. (1996). J. Pathol., 179, 89-94.
79. Viglietto G, Chiappetta G, Martinez-Tello FJ, Fukunaga FH, Tallini G, Rigopoulou D, Visconti R, Mastro A, Santoro M and Fusco A. (1995). Oncogene, 11, 1207-1210.
80. Wasenius VM, Hemmer S, Kettunen E, Knuutila S, Franssila K and Joensuu H. (2003). Clin. Cancer Res., 9, 68-75.
81. Wilhelm SM, Carter C, Tang L, Wilkie D, McNabola A, Rong H, Chen C, Zhang X, Vincent P, McHugh M, Cao Y, Shujath J, Gawlak S, Eveleigh D, Rowley B, Liu L, Adnane L, Lynch M, Auclair D, Taylor I, Gedrich R, Voznesensky A, Riedl B, Post LE, Bollag G and Trail PA. (2004). Cancer Res., 64, 7099-7109.
82. Wreesmann VB, Sieczka EM, Socci ND, Hezel M, Belbin TJ, Childs G, Patel SG, Patel KN, Tallini G, Prystowsky M, Shaha AR, Kraus D, Shah JP, Rao PH, Ghossein R and Singh B. (2004). Cancer Res., 64, 3780-3789.
83. Zhu Z, Gandhi M, Nikiforova MN, Fischer AH and Nikiforov YE. (2003). Am. J. Clin. Pathol., 120, 71-77.