The complete genome sequence of Mycobacterium avium subspecies paratuberculosis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 35, 2005, Pages 12344-12349

  Li, Lingling ^a   Bannantine, John P ^c   Zhang, Qing ^a   Amonsin, Alongkorn ^a   May, Barbara J ^a   Alt, David ^c   Banerji, Nilanjana ^a,b   Kanjilal, Sagarika ^a,b   Kapur, Vivek ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF MINNESOTA MEDICAL SCHOOL   (United States)

^c NATIONAL ANIMAL DISEASE CENTER   (United States)

Author keywords

Genomics; Johne's disease; Molecular diagnostics

Indexed keywords

LIGASE; NUCLEOTIDE; RIBOSOME RNA; SALICYL AMP LIGASE; TRANSFER RNA; UNCLASSIFIED DRUG; VIRULENCE FACTOR;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BASE PAIRING; BOVIDS; CATTLE; CHROMOSOME ANALYSIS; CLONE; DIAGNOSTIC TEST; GENE CLUSTER; GENE SEQUENCE; GENE TARGETING; GENETIC SELECTION; IMMUNOLOGICAL TECHNIQUE; MBTA GENE; MULTIGENE FAMILY; MYCOBACTERIUM AVIUM; MYCOBACTERIUM PARATUBERCULOSIS; MYCOBACTIN GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PARATUBERCULOSIS; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY;

ANIMALS; BACTERIAL PROTEINS; CATTLE; CHROMOSOME MAPPING; DNA, BACTERIAL; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; HUMANS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MYCOBACTERIUM PARATUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS; OXAZOLES; REPETITIVE SEQUENCES, NUCLEIC ACID; SPECIES SPECIFICITY; VIRULENCE;

BOS TAURUS; BOVINAE; MYCOBACTERIUM AVIUM;

EID: 24644441020     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0505662102     Document Type: Article

References (69)

1. Harris, J. E. & Lammerding, A. M. (2001) J. Food Prot. 64, 2103-2110.
2. Chi, J., VanLeeuwen, J. A., Weersink, A. & Keefe, G. P. (2002) Prev. Vet. Med. 55, 137-153.
3. Ott, S. L., Wells, S. J. & Wagner, B. A. (1999) Prev. Vet. Med. 40, 179-192.
4. Grant, I. R., Ball, H. J. & Rowe, M. T. (2002) Appl. Environ. Microbiol. 68, 2428-2435.
5. Streeter, R. N., Hoffsis, G. F., Bech-Nielsen, S., Shulaw, W. P. & Rings, D. M. (1995) Am. J. Vet. Res. 56, 1322-1324.
6. Sweeney, R. W. (1996) Vet. Clin. North Am. Food Anim. Pract. 12, 305-312.
7. Greenstein, R. J. (2003) Lancet Infect. Dis. 3, 507-514.
8. Clarke, C. J. (1997) Vet. J. 153, 245-247.
9. Cousins, D. V., Whittington, R., Marsh, I., Masters, A., Evans, R. J. & Kluver, P. (1999) Mol. Cell Probes 13, 431-442.
10. Colgrove, G. S., Thoen, C. O., Blackburn, B. O. & Murphy, C. D. (1989) Vet. Microbiol. 19, 183-187.
11. Bannantine, J. P., Zhang, Q., Li, L. L. & Kapur, V. (2003) BMC Microbiol. 3, 10.
12. Hurley, S. S., Splitter, G. A. & Welch, R. A. (1989) J. Clin. Microbiol. 27, 1582-1587.
13. Saxegaard, F. & Baess, I. (1988) Apmis 96, 37-42.
14. Foley-Thomas, E. M., Whipple, D. L., Bermudez, L. E. & Barletta, R. G. (1995) Microbiology 141, 1173-1181.
15. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J. F., Dougherty, B. A., Merrick, J. M., et al. (1995) Science 269, 496-512.
16. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1999) in Current Protocols in Molecular Biology (Wiley, New York), Vol. 1, pp. 2.4.1-2.4.5.
17. Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M. A. & Barrell, B. (2000) Bioinformatics 16, 944-945.
18. Delcher, A. L., Harmon, D., Kasif, S., White, O. & Salzberg, S. L. (1999) Nucleic Acids Res. 27, 4636-4641.
19. Aggarwal, G. & Ramaswamy, R. (2002) J. Biosci. 27, 7-14.
20. Lowe, T. M. & Eddy, S. R. (1997) Nucleic Acids Res. 25, 955-964.
21. Cole, S. T. & Barrell, B. G. (1998) Novartis Found. Symp. 217, 160-172; discussion, 172-177.
22. Cole, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry, C. E., III, et al. (1998) Nature 393, 537-544.
23. Lobry, J. R. (1996) Mol. Biol. Evol. 13, 660-665.
24. Gordon, S. V., Heym, B., Parkhill, J., Barrell, B. & Cole, S. T. (1999) Microbiology 145, 881-892.
25. Lee, T. Y., Lee, T. J., Belisle, J. T., Brennan, P. J. & Kim, S. K. (1997) Tuber. Lung Dis. 78, 13-19.
26. Perret, X., Viprey, V., Freiberg, C. & Broughton, W. J. (1997) J. Bacteriol. 179, 7488-7496.
27. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., et al. (1997) Nature 390, 249-256.
28. Blattner, F. R., Plunkett, G., III, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) Science 277, 1453-1474.
29. Tekaia, F., Gordon, S. V., Garnier, T., Brosch, R., Barrell, B. G. & Cole, S. T. (1999) Tuber. Lung Dis. 79, 329-342.
30. Burne, R. A. & Chen, Y. Y. (2000) Microbes Infect. 2, 533-542.
31. Av-Gay, Y. & Everett, M. (2000) Trends Microbiol. 8, 238-244.
32. Nei, M. & Gojobori, T. (1986) Mol. Biol. Evol. 3, 418-426.
33. Yamaoka, T., Yano, M., Kondo, M., Sasaki, H., Hino, S., Katashima, R., Moritani, M. & Itakura, M. (2001) J. Biol. Chem. 276, 21285-21291.
34. Quadri, L. E., Sello, J., Keating, T. A., Weinreb, P. H. & Walsh, C. T. (1998) Chem. Biol. 5, 631-645.
35. Semret, M., Zhai, G., Mostowy, S., Cleto, C., Alexander, D., Cangelosi, G., Cousins, D., Collins, D. M., van Soolingen, D. & Behr, M. A. (2004) J. Bacteriol. 186, 6332-6334.
36. Ramakrishnan, L., Federspiel, N. A. & Falkow, S. (2000) Science 288, 1436-1439.
37. Skeiky, Y. A., Ovendale, P. J., Jen, S., Alderson, M. R., Dillon, D. C., Smith, S., Wilson, C. B., Orme, I. M., Reed, S. G. & Campos-Neto, A. (2000) J. Immunol. 165, 7140-7149.
38. Hermans, P. W., van Soolingen, D. & van Embden, J. D. (1992) J. Bacteriol. 174, 4157-4165.
39. Poulet, S. & Cole, S. T. (1995) Arch. Microbiol. 163, 87-95.
40. Fleischmann, R. D., Alland, D., Eisen, J. A., Carpenter, L., White, O., Peterson, J., DeBoy, R., Dodson, R., Gwinn, M., Haft, D., et al. (2002) J. Bacteriol. 184, 5479-5490.
41. Banu, S., Honore, N., Saint-Joanis, B., Philpott, D., Prevost, M. C. & Cole, S. T. (2002) Mol. Microbiol. 44, 9-19.
42. Cole, S. T., Eiglmeier, K., Parkhill, J., James, K. D., Thomson, N. R., Wheeler, P. R., Honore, N., Garnier, T., Churcher, C., Harris, D., et al. (2001) Nature 409, 1007-1011.
43. Haile, Y., Bjune, G. & Wiker, H. G. (2002) Microbiology 148, 3881-3886.
44. Arruda, S., Bomfim, G., Knights, R., Huima-Byron, T. & Riley, L. W. (1993) Science 261, 1454-1457.
45. Kumar, A., Bose, M. & Brahmachari, V. (2003) Infect. Immun. 71, 6083-6087.
46. Kumar, A., Chandolia, A., Chaudhry, U., Brahmachari, V. & Bose, M. (2005) FEMS Immunol. Med. Microbiol. 43, 185-195.
47. Besra, G. S., Sievert, T., Lee, R. E., Slayden, R. A., Brennan, P. J. & Takayama, K. (1994) Proc. Natl. Acad. Sci. USA 91, 12735-12739.
48. Minnikin, D. E. & Goodfellow, M. (1980) Soc. Appl. Bacteriol. Symp. Ser. 8, 189-256.
49. Rhoades, E. R. & Ullrich, H. J. (2000) Immunol. Cell Biol. 78, 301-310.
50. Schorey, J. S., Carroll, M. C. & Brown, E. J. (1997) Science 277, 1091-1093.
51. Bloch, H. & Segal, W. (1956) J. Bacteriol 72, 132-141.
52. Segal, W. & Bloch, H. (1957) Am. Rev. Tuberc. 75, 495-500.
53. Smith, I. (2003) Clin. Microbiol. Rev. 16, 463-496.
54. Ashmarina, L. I., Rusnak, N., Miziorko, H. M. & Mitchell, G. A. (1994) J. Biol. Chem. 269, 31929-31932.
55. Cox, J. S., Chen, B., McNeil, M. & Jacobs, W. R., Jr. (1999) Nature 402, 79-83.
56. Sirakova, T. D., Dubey, V. S., Cynamon, M. H. & Kolattukudy, P. E. (2003) J. Bacteriol. 185, 2999-3008.
57. Sirakova, T. D., Thirumala, A. K., Dubey, V. S., Sprecher, H. & Kolattukudy, P. E. (2001) J. Biol. Chem. 276, 16833-16839.
58. Bannantine, J. P., Hansen, J. K., Paustian, M. L., Amonsin, A., Li, L. L., Stabel, J. R. & Kapur, V. (2004) J. Clin. Microbiol. 42, 106-114.
59. Bannantine, J. P., Huntley, J. F., Miltner, E., Stabel, J. R. & Bermudez, L. E. (2003) Microbiology 149, 2061-2069.
60. Bannantine, J. P., Baechler, E., Zhang, Q., Li, L. & Kapur, V. (2002) J. Clin. Microbiol. 40, 1303-1310.
61. Paustian, M. L., Amonsin, A., Kapur, V. & Bannantine, J. P. (2004) J. Clin. Microbiol. 42, 2675-2681.
62. Gascoyne-Binzi DM, B. R., Frothingham R, Robinson G, Collyns TA, Gelletlie R, Hawkey PM. J. Clin. Microbiol. 39, 69-74.
63. Adair, D. M., Worsham, P. L., Hill, K. K., Klevytska, A. M., Jackson, P. J., Friedlander, A. M. & Keim, P. (2000) J. Clin. Microbiol. 38, 1516-1519.
64. Kim, S. G., Shin, S. J., Jacobson, R. H., Miller, L. J., Harpending, P. R., Stehman, S. M., Rossiter, C. A. & Lein, D. A. (2002) J. Vet. Diagn. Invest. 14, 126-131.
65. Kim, W., Hong, Y. P., Yoo, J. H., Lee, W. B., Choi, C. S. & Chung, S. I. (2002) FEMS Microbiol. Lett. 207, 21-27.
66. Wiid, I. J., Werely, C., Beyers, N., Donald, P. & van Helden, P. D. (1994) J. Clin. Microbiol. 32, 1318-1321.
67. Amonsin, A., Li, L. L., Zhang, Q., Bannantine, J. P., Motiwala, A. S., Sreevatsan, S. & Kapur, V. (2004) J. Clin. Microbiol. 42, 1694-1702.
68. Ghadiali, A. H., Strother, M., Naser, S. A., Manning, E. J. & Sreevatsan, S. (2004) J. Clin. Microbiol. 42, 5345-5348.
69. Motiwala, A. S., Amonsin, A., Strother, M., Manning, E. J., Kapur, V. & Sreevatsan, S. (2004) J. Clin. Microbiol. 42, 1703-1712.