Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains

Journal of Bacteriology

Volumn 184, Issue 19, 2002, Pages 5479-5490

  Fleischmann, R D ^a   Alland, D ^a   Eisen, J A ^a   Carpenter, L ^a   White, O ^a   Peterson, J ^a   DeBoy, R ^a   Dodson, R ^a   Gwinn, M ^a   Haft, D ^a   Hickey, E ^a   Kolonay, J F ^a   Nelson, W C ^a   Umayam, L A ^a   Ermolaeva, M ^a   Salzberg, S L ^a   Delcher, A ^a   Utterback, T ^a   Weidman, J ^a   Khouri, H ^a   Gill, J ^a   Mikula, A ^a   Bishai, W ^a   Jacobs Jr , W R ^a   Venter, J C ^a   Fraser, C M ^a   more..

^a J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENYLATE CYCLASE; MEMBRANE PROTEIN; PHOSPHOLIPASE C;

ARTICLE; BACTERIAL GENOME; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; CLINICAL EXAMINATION; COMPARATIVE STUDY; CONTROLLED STUDY; DNA POLYMORPHISM; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; IMMUNE RESPONSE; IMMUNITY; LABORATORY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; STRAIN DIFFERENCE;

BACTERIAL PROTEINS; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; HUMANS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PHYLOGENY; POLYMORPHISM, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TUBERCULOSIS; VARIATION (GENETICS);

ACTINOBACTERIA (CLASS); ANIMALIA; BACTERIA (MICROORGANISMS); MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; PROKARYOTA; UNCULTURED ACTINOMYCETE;

EID: 0036777599     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.19.5479-5490.2002     Document Type: Article

References (42)

1. Transmission of tuberculosis in New York City: An analysis by DNA fingerprinting and conventional epidemiologic methods
2. Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
3. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
4. Basic local alignment search tool
5. Hospital outbreak of multidrug-resistant Mycobacterium tuberculosis infections. Factors in transmission to staff and HIV-infected patients
6. Comparative genomics of BCG vaccines by whole-genome DNA microarray
7. Comparison of the proteome of Mycobacterium tuberculosis strain H37Rv with clinical isolate CDC 1551
8. Virulence of Mycobacterium tuberculosis CDC1551 and H37Rv in rabbits evaluated by Lurie's pulmonary tubercle count method
9. Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica
10. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
11. Alignment of whole genomes
12. IS6110-mediated deletions of wild-type chromosomes of Mycobacterium tuberculosis
13. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
14. New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv
15. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays
16. Comparison of Mycobacterium tuberculosis genomes reveals frequent deletions in a 20 kb variable region in clinical isolates
17. Nosocomial outbreak of tuberculosis in a renal transplant unit: Application of a new technique for restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates
18. Comparing genomes within the species Mycobacterium tuberculosis
19. High-throughput SNP genotyping with the mass-code system
20. HIV signature and sequence variation analysis
21. Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis
22. Mycobacterium tuberculosis CDC1551 induces a more vigorous host response in vivo and in vitro, but is not more virulent than other clinical isolates
23. Nonrandom association of the IS6110 and Mycobacterium tuberculosis: Implications for molecular epidemiological studies
24. Negligible genetic diversity of Mycobacterium tuberculosis host immune system protein targets: Evidence of limited selective pressure
25. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
26. Physical mapping of Mycobacterium bovis BCG Pasteur reveals differences from the genome map of Mycobacterium tuberculosis H37Rv and from M. bovis
27. Granuloma-specific expression of Mycobacterium virulence proteins from the glycine-rich PE-PGRS family
28. Molecular genetic basis of anti-microbial agent resitance in Mycobacterium tuberculosis: 1998 update
29. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
30. Microbial gene identification using interpolated Markov models
31. T cell expression cloning of a Mycobacterium tuberculosis gene encoding a protective antigen associated with the early control of infection
32. The two distinct phospholipases C of Listeria monocytogenes have overlapping roles in escape from a vacuole and cell-to-cell spread
33. Pfam; a comprehensive database of protein domain families based on seed alignments
34. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionary recent global dissemination
35. TIGR assembler: A new tool for assembling large shotgun sequencing projects
36. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
37. An outbreak involving extensive transmission of a virulent strain of Mycobacterium tuberculosis
38. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: Recommendations for a standardized methodology
39. Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica
40. Multiple drug resistance: A world wide threat
41. Mapping of IS6110 flanking regions in clinical isolates of Mycobacterium tuberculosis demonstrates genome plasticity
42. Computer analysis of nucleic acid sequences