BALSA: Bayesian algorithm for local sequence alignment

Nucleic Acids Research

Volumn 30, Issue 5, 2002, Pages 1268-1277

  Webb, Bobbie Jo M ^a,b   Liu, Jun S ^c   Lawrence, Charles E ^a,d  

^a WADSWORTH CENTER   (United States)

^b RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^c HARVARD UNIVERSITY   (United States)

^d Rensselaer Polytechnic Institute   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANALYTICAL ERROR; AUTOMATION; BAYES THEOREM; COMPUTER PROGRAM; CONTROLLED STUDY; PRIORITY JOURNAL; PROBABILITY; REVIEW; SCORING SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE;

EID: 0036493242     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.5.1268     Document Type: Review

References (19)

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3. Identification of common molecular subsequences
4. A general method applicable to the search for similarities in the amino acid sequence of two proteins
5. A sequence similarity search algorithm based on a probabilistic interpretation of an alignment scoring system
6. Matching sequences under deletion/insertion constraints
7. Bayesian adaptive sequence alignment algorithms
8. Bayesian inference on biopolymer models
9. Amino acid substitution matrices from protein blocks
10. Improved tools for biological sequence comparison
11. Basic local alignment tool
12. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
13. Applications and statistics for multiple high-scoring segments in molecular sequences
14. Empirical statistical estimates for sequence similarity searches
15. A unified statistical framework for sequence comparison and structure comparison