The effects of rate variation on ancestral inference in the coalescent

Genetics

Volumn 156, Issue 3, 2000, Pages 1427-1436

  Markovtsova, L ^a   Marjoram, P ^a   Tavare, S ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MITOCHONDRIAL DNA;

ARTICLE; DNA SEQUENCE; GENE MUTATION; HAPLOTYPE; HUMAN; MATHEMATICAL MODEL; MATHEMATICAL PARAMETERS; PHYLOGENY; PRIORITY JOURNAL;

ALGORITHMS; BAYES THEOREM; DNA; DNA, MITOCHONDRIAL; EVOLUTION; MARKOV CHAINS; MODELS, GENETIC; MODELS, STATISTICAL; MUTATION; PHYLOGENY; PROBABILITY; REPRODUCIBILITY OF RESULTS; TIME; VARIATION (GENETICS);

PROKARYOTA;

EID: 0033762150     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism
2. The latent roots of certain Markov chains arising in genetics: A new approach. I. Haploid models
3. The effects of variable mutation rates across sites on the phylogenetic estimation of effective population size of mutation rate of DNA sequences
4. Coalescents and genealogical structure under neutrality
5. Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees
6. Evolutionary trees from DNA sequence data: A maximum likelihood approach
7. Ancestral inference in population genetics
8. Monte Carlo sampling methods using Markov chains and their applications
9. Gene genealogies and the coalescent process
10. On the genealogy of large populations
11. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
12. Maximum likelihood estimation of population growth rates based on the coalescent
13. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
14. Estimating substitution rates from molecular data using the coalescent
15. Modeling the evolution of the human mitochondrial genome
16. The age of a unique event polymorphism
17. Bayesian phylogenetic inference via Markov chain Monte Carlo methods
18. Equations of state calculations by fast computing machine
19. Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA
20. Estimation of the amount of DNA polymorphism when the neutral mutation rate varies among sites
21. The mutation rate in the human mtDNA control region
22. The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites
23. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
24. Inferring coalescence times from DNA sequence data
25. Inching towards reality: An improved likelihood model of sequence evolution
26. Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA
27. Extensive mitochondrial diversity within a single Amerindian tribe
28. On the number of segregating sites in genetical models without recombination
29. Genealogical inference from microsatellite data
30. Among-site rate variation and its impact on phylogenetic analyses
31. Statistical properties of a DNA sample under the finite-sites model
32. Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method