-
1
-
-
0034671841
-
GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming
-
Toulme, F. et al. GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming. EMBO J. 19, 6853-6859 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 6853-6859
-
-
Toulme, F.1
-
2
-
-
1542616348
-
Translocation of Escherichia coli RNA polymerase against a protein roadblock in vivo highlights a passive sliding mechanism for transcript elongation
-
Mosrin-Huaman, C., Turnbough, C. L. Jr & Rahmouni, A. R. Translocation of Escherichia coli RNA polymerase against a protein roadblock in vivo highlights a passive sliding mechanism for transcript elongation. Mol. Microbiol. 51, 1471-1481 (2004).
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1471-1481
-
-
Mosrin-Huaman, C.1
Turnbough Jr., C.L.2
Rahmouni, A.R.3
-
3
-
-
0035943341
-
70-retaining transcription elongation complexes from Escherichia coli
-
70-retaining transcription elongation complexes from Escherichia coli. Cell 106, 443-451 (2001).
-
(2001)
Cell
, vol.106
, pp. 443-451
-
-
Bar-Nahum, G.1
Nudler, E.2
-
4
-
-
0035943446
-
70 with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA
-
70 with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell 106, 453-463 (2001).
-
(2001)
Cell
, vol.106
, pp. 453-463
-
-
Mukhopadhyay, J.1
-
5
-
-
2542505377
-
Helicases become mechanistically simpler and functionally more complex
-
von Hippel, P. H. Helicases become mechanistically simpler and functionally more complex. Nature Struct. Mol. Biol. 11, 494-496 (2004).
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 494-496
-
-
Von Hippel, P.H.1
-
6
-
-
0035951425
-
A general model for nucleic acid helicases and their 'coupling' within macromolecular machines
-
von Hippel, P. H. & Delagoutte, E. A general model for nucleic acid helicases and their 'coupling' within macromolecular machines. Cell 104, 177-190 (2001).
-
(2001)
Cell
, vol.104
, pp. 177-190
-
-
Von Hippel, P.H.1
Delagoutte, E.2
-
7
-
-
0037294467
-
Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes
-
Delagoutte, E. & von Hippel, P. H. Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: integration of helicases into cellular processes. Q. Rev. Biophys. 36, 1-69 (2003).
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 1-69
-
-
Delagoutte, E.1
Von Hippel, P.H.2
-
8
-
-
0028962338
-
Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: 'Jumping' of RNA polymerase and asymmetric expansion and contraction of the 'transcription bubble'
-
Zaychikov, E., Denissova, L. & Heumann, H. Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: 'jumping' of RNA polymerase and asymmetric expansion and contraction of the 'transcription bubble'. Proc. Natl Acad. Sci. USA 92, 1739-1743 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 1739-1743
-
-
Zaychikov, E.1
Denissova, L.2
Heumann, H.3
-
9
-
-
0029818631
-
Transcription processivity: Protein-DNA interactions holding together the elongation complex
-
Nudler, E., Avetissova, E., Markovtsov, V. & Goldfarb, A. Transcription processivity: protein-DNA interactions holding together the elongation complex. Science 273, 211-217 (1996).
-
(1996)
Science
, vol.273
, pp. 211-217
-
-
Nudler, E.1
Avetissova, E.2
Markovtsov, V.3
Goldfarb, A.4
-
10
-
-
0032541021
-
Spatial organization of transcription elongation complex in Escherichia Coli
-
Nudler, E., Gusarov, I., Avetissova, E., Kozlov, M. & Goldfarb, A. Spatial organization of transcription elongation complex in Escherichia Coli. Science 281, 424-428 (1998).
-
(1998)
Science
, vol.281
, pp. 424-428
-
-
Nudler, E.1
Gusarov, I.2
Avetissova, E.3
Kozlov, M.4
Goldfarb, A.5
-
11
-
-
0034725870
-
A structural model of transcription elongation
-
Korzheva, N. et al. A structural model of transcription elongation. Science 289, 619-625 (2000).
-
(2000)
Science
, vol.289
, pp. 619-625
-
-
Korzheva, N.1
-
12
-
-
0031552174
-
The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
-
Nudler, E., Mustaev, A., Lukhtanov, E. & Goldfarb, A. The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 89, 33-41 (1997).
-
(1997)
Cell
, vol.89
, pp. 33-41
-
-
Nudler, E.1
Mustaev, A.2
Lukhtanov, E.3
Goldfarb, A.4
-
13
-
-
0032113494
-
Crucial role of the RNA:DNA hybrid in the processivity of transcription
-
Sidorenkov, I., Komissarava, N. & Kashlev, M. Crucial role of the RNA:DNA hybrid in the processivity of transcription. Mol. Cell 2, 55-64 (1998).
-
(1998)
Mol. Cell
, vol.2
, pp. 55-64
-
-
Sidorenkov, I.1
Komissarava, N.2
Kashlev, M.3
-
14
-
-
0025082365
-
RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage
-
Monforte, J. A., Kahn, J. D. & Hearst, J. E. RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage. Biochemistry 29, 7882-7890 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 7882-7890
-
-
Monforte, J.A.1
Kahn, J.D.2
Hearst, J.E.3
-
15
-
-
0030584091
-
Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
-
Reeder, T. C. & Hawley, D. K. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. Cell 87, 767-777 (1996).
-
(1996)
Cell
, vol.87
, pp. 767-777
-
-
Reeder, T.C.1
Hawley, D.K.2
-
16
-
-
0031059249
-
Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
-
Komissarova, N. & Kashlev, M. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded. Proc. Natl Acad. Sci. USA 94, 1755-1760 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
17
-
-
0032438195
-
Functional topography of nascent RNA in elongation intermediates of RNA polymerase
-
Komissarova, N. & Kashlev, M. Functional topography of nascent RNA in elongation intermediates of RNA polymerase. Proc. Natl Acad. Sci. USA 95, 14699-14704 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14699-14704
-
-
Komissarova, N.1
Kashlev, M.2
-
18
-
-
0026084789
-
A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli
-
Yager, T. D. & von Hippel, P. H. A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli. Biochemistry 30, 1097-1118 (1991). Presents a thermodynamic analysis of the formation of transcription complexes.
-
(1991)
Biochemistry
, vol.30
, pp. 1097-1118
-
-
Yager, T.D.1
Von Hippel, P.H.2
-
19
-
-
0036385743
-
Active Escherichia coli transcription elongation complexes are functionally homogeneous
-
Pasman, Z. & von Hippel, P. H. Active Escherichia coli transcription elongation complexes are functionally homogeneous. J. Mol. Biol. 322, 505-519 (2002).
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 505-519
-
-
Pasman, Z.1
Von Hippel, P.H.2
-
20
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang, G. et al. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution. Cell 98, 811-824 (1999).
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
-
21
-
-
0034671288
-
RNA potymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
-
Ebright, R. H. RNA potymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. J. Mol. Biol. 304, 687-698 (2000).
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 687-698
-
-
Ebright, R.H.1
-
22
-
-
0033568350
-
A zinc-binding site in the largest subunit of DNA-dependent RNA polymerase is involved in enzyme assembly
-
Markov, D., Naryshkina, T., Mustaev, A. & Severinov, K. A zinc-binding site in the largest subunit of DNA-dependent RNA polymerase is involved in enzyme assembly. Genes Dev. 13, 2439-2448 (1999).
-
(1999)
Genes Dev.
, vol.13
, pp. 2439-2448
-
-
Markov, D.1
Naryshkina, T.2
Mustaev, A.3
Severinov, K.4
-
23
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev, D. G. et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 417, 712-719 (2002).
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
-
24
-
-
4444270274
-
A conserved zinc binding domain in the largest subunit of DNA-dependent RNA polymerase modulates intrinsic transcription termination and antitermination but does not stabilize the elongation complex
-
King, R. A., Markov, D., Sen, R., Severinov, K. & Weisberg, R. A. A conserved zinc binding domain in the largest subunit of DNA-dependent RNA polymerase modulates intrinsic transcription termination and antitermination but does not stabilize the elongation complex. J. Mol. Biol. 342, 1143-1154 (2004).
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1143-1154
-
-
King, R.A.1
Markov, D.2
Sen, R.3
Severinov, K.4
Weisberg, R.A.5
-
25
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
-
Gnatt, A. L., Cramer, P., Fu, J., Bushnell, D. A. & Kornberg, R. D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution. Science 292, 1876-1882 (2001). Describes the structure of an elongating RNA polymerase including the transcription bubble, the RNA-DNA hybrid and the RNA-polymerase active site.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
26
-
-
0036753435
-
Swing-gate model of nucleotide entry into the RNA polymerase active center
-
Epshtein, V. et al. Swing-gate model of nucleotide entry into the RNA polymerase active center. Mol. Cell 10, 623-634 (2002).
-
(2002)
Mol. Cell
, vol.10
, pp. 623-634
-
-
Epshtein, V.1
-
27
-
-
1142310578
-
Structural basis of transcription: Separation of RNA from DNA by RNA polymerase II
-
Westover, K. D., Bushnell, D. A. & Kornberg, R. D. Structural basis of transcription: separation of RNA from DNA by RNA polymerase II. Science 303, 1014-1016 (2004).
-
(2004)
Science
, vol.303
, pp. 1014-1016
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
28
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer, P. et al. Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288, 640-649 (2000).
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
-
29
-
-
0043244877
-
Structure and function of the transcription elongation factor GreB bound to bacteria RNA polymerase
-
Opalka, N. et al. Structure and function of the transcription elongation factor GreB bound to bacteria RNA polymerase. Cell 114, 335-345 (2003). Structural demonstration of the binding of GreB to RNA polymerase and the mechanism of RNA-chain cleavage during editing.
-
(2003)
Cell
, vol.114
, pp. 335-345
-
-
Opalka, N.1
-
30
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer, P., Bushnell, D. A. & Komberg, R. D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 292, 1863-1876 (2001).
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Komberg, R.D.3
-
31
-
-
0037543997
-
Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase
-
Sosunov, V. et al. Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase. EMBO J. 22, 2234-2244 (2003). Provides evidence to support a two-metal-ion active site in RNA polymerase.
-
(2003)
EMBO J.
, vol.22
, pp. 2234-2244
-
-
Sosunov, V.1
-
32
-
-
0037086450
-
Structure-based analyse of RNA polymerase function: The largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length
-
Kuznedelov, K., Korzheva, N., Mustaev, A. & Severinov, K. Structure-based analyse of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length. EMBO J. 21, 1369-1378 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 1369-1378
-
-
Kuznedelov, K.1
Korzheva, N.2
Mustaev, A.3
Severinov, K.4
-
33
-
-
0344413496
-
The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
-
Toulokhonov, I. & Landick, R. The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination. Mol. Cell 12, 1125-1136 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 1125-1136
-
-
Toulokhonov, I.1
Landick, R.2
-
34
-
-
0345492316
-
Macromolecular complexes that unwind nucleic acids
-
von Hippel, P. H. & Delagoutte, E. Macromolecular complexes that unwind nucleic acids. Bioessays 25, 1168-1177 (2003).
-
(2003)
Bioessays
, vol.25
, pp. 1168-1177
-
-
Von Hippel, P.H.1
Delagoutte, E.2
-
35
-
-
0026728955
-
The single-nucleotide addition cycle in transcription: A biophysical and biochemical perspective
-
Erie, D. A., Yager, T. D. & von Hippel, P. H. The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. Annu. Rev. Biophys. Biomol. Struct. 21, 379-415 (1992). Provides mechanistic details of the single-nucleotide-addition and -excision cycle.
-
(1992)
Annu. Rev. Biophys. Biomol. Struct.
, vol.21
, pp. 379-415
-
-
Erie, D.A.1
Yager, T.D.2
Von Hippel, P.H.3
-
36
-
-
0000359208
-
Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Hopfield, J. J. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA 71, 4135-4139 (1974).
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4135-4139
-
-
Hopfield, J.J.1
-
37
-
-
0030950638
-
RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA
-
Komissarova, N. & Kashlev, M. RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA. J. Biol. Chem. 272, 15329-15338 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15329-15338
-
-
Komissarova, N.1
Kashlev, M.2
-
38
-
-
0032483305
-
NTP concentration effects on initial transcription by T 7 RNAP indicate that translocation occurs through passive sliding and reveal that divergent promoters have distinct NTP concentration requirements for productive initiation
-
Guajardo, R., Lopez, P., Dreyfus, M. & Sousa, R. NTP concentration effects on initial transcription by T7 RNAP indicate that translocation occurs through passive sliding and reveal that divergent promoters have distinct NTP concentration requirements for productive initiation. J. Mol. Biol. 281, 777-792 (1998).
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 777-792
-
-
Guajardo, R.1
Lopez, P.2
Dreyfus, M.3
Sousa, R.4
-
39
-
-
7444253928
-
Sequence-dependent kinetic model for transcription elongation by RNA polymerase
-
Bai, L., Shundrovsky, A. & Wang, M. D. Sequence-dependent kinetic model for transcription elongation by RNA polymerase. J. Mol. Biol. 344, 335-349 (2004).
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 335-349
-
-
Bai, L.1
Shundrovsky, A.2
Wang, M.D.3
-
40
-
-
0027761137
-
Multiple RNA polymerase conformations and GreA: Control of the fidelity of transcription
-
Erie, D. A., Hajiseyedjavadi, O., Young, M. C. & von Hippel, P. H. Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science 262, 867-873 (1993).
-
(1993)
Science
, vol.262
, pp. 867-873
-
-
Erie, D.A.1
Hajiseyedjavadi, O.2
Young, M.C.3
Von Hippel, P.H.4
-
41
-
-
0032524661
-
Transcriptional fidelity and proofreading by RNA porymerase II
-
Thomas, M. J., Platas, A. A. & Hawley, D. K. Transcriptional fidelity and proofreading by RNA porymerase II. Cell 93, 627-637 (1998).
-
(1998)
Cell
, vol.93
, pp. 627-637
-
-
Thomas, M.J.1
Platas, A.A.2
Hawley, D.K.3
-
42
-
-
0026701388
-
GreA protein: A transcription elongation factor from Escherichia coli
-
Borukhov, S., Polyakov, A., Nikiforov, V. & Goldfarb, A. GreA protein: a transcription elongation factor from Escherichia coli. Proc. Natl Acad. Sci. USA 89, 8899-8902 (1992).
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 8899-8902
-
-
Borukhov, S.1
Polyakov, A.2
Nikiforov, V.3
Goldfarb, A.4
-
43
-
-
0027536870
-
Transcript cleavage factors from E. coli
-
Borukhov, S., Sagitov, V. & Goldfarb, A. Transcript cleavage factors from E. coli. Cell 72, 459-466 (1993).
-
(1993)
Cell
, vol.72
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
44
-
-
0029015817
-
Intrinsic transcript cleavage activity of RNA polymerase
-
Orlova, M., Newlands, J., Das, A., Goldfarb, A. & Borukhov, S. Intrinsic transcript cleavage activity of RNA polymerase. Proc. Natl Acad. Sci. USA 92, 4596-4600 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 4596-4600
-
-
Orlova, M.1
Newlands, J.2
Das, A.3
Goldfarb, A.4
Borukhov, S.5
-
45
-
-
0346243938
-
Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase
-
Laptenko, O., Lee, J., Lomakin, I. & Borukhov, S. Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase. EMBO J. 22, 6322-6334 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 6322-6334
-
-
Laptenko, O.1
Lee, J.2
Lomakin, I.3
Borukhov, S.4
-
46
-
-
0347994909
-
Donation of catalytic residues to RNA polymerase active center by transcription factor Gre
-
Sosunova, E. et al. Donation of catalytic residues to RNA polymerase active center by transcription factor Gre. Proc. Natl Acad. Sci. USA 100, 15469-15474 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15469-15474
-
-
Sosunova, E.1
-
47
-
-
0345047725
-
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
-
Neuman, K. C., Abbondanzieri, E. A., Landick, R., Gelles, J. & Block, S. M. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell 115, 437-447 (2003). Discusses the role of pauses in the regulation of transcription.
-
(2003)
Cell
, vol.115
, pp. 437-447
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
48
-
-
0346258014
-
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
-
Shaevitz, J. W., Abbondanzieri, E. A., Landick, R. & Block, S. M. Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426, 684-687 (2003).
-
(2003)
Nature
, vol.426
, pp. 684-687
-
-
Shaevitz, J.W.1
Abbondanzieri, E.A.2
Landick, R.3
Block, S.M.4
-
49
-
-
0034691146
-
Pausing by bacteria RNA polymerase is mediated by mechanistically distinct classes of signals
-
Artsimovitch, I. & Landick, R. Pausing by bacteria RNA polymerase is mediated by mechanistically distinct classes of signals. Proc. Natl Acad. Sci. USA 97, 7090-7095 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 7090-7095
-
-
Artsimovitch, I.1
Landick, R.2
-
50
-
-
0019331859
-
DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription
-
Martin, F. H. & Tinoco, I. Jr. DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription. Nucleic Acids Res. 8, 2295-2299 (1980).
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 2295-2299
-
-
Martin, F.H.1
Tinoco Jr., I.2
-
51
-
-
0028091898
-
Stability of Escherichia coli transcription complexes near an intrinsic terminator
-
Wilson, K. S. & von Hippel, P. H. Stability of Escherichia coli transcription complexes near an intrinsic terminator. J. Mol. Biol. 244, 36-51 (1994).
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 36-51
-
-
Wilson, K.S.1
Von Hippel, P.H.2
-
52
-
-
0035957687
-
Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins
-
Toulokhonov, I., Artsimovitch, I. & Landick, R. Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins. Science 292, 730-733 (2001).
-
(2001)
Science
, vol.292
, pp. 730-733
-
-
Toulokhonov, I.1
Artsimovitch, I.2
Landick, R.3
-
53
-
-
0033120034
-
The mechanism of intrinsic transcription termination
-
Gusarov, I. & Nudler, E. The mechanism of intrinsic transcription termination. Mol. Cell 3, 495-504 (1999).
-
(1999)
Mol. Cell
, vol.3
, pp. 495-504
-
-
Gusarov, I.1
Nudler, E.2
-
54
-
-
0036863659
-
Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination
-
Komissarova, N., Becker, J., Solter, S., Kireeva, M. & Kashlev, M. Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination. Mol Cell 10, 1151-1162 (2002).
-
(2002)
Mol. Cell
, vol.10
, pp. 1151-1162
-
-
Komissarova, N.1
Becker, J.2
Solter, S.3
Kireeva, M.4
Kashlev, M.5
-
55
-
-
0033597435
-
Mechanism of intrinsic transcription termination and antitermination
-
Yamell, W. S. & Roberts, J. W. Mechanism of intrinsic transcription termination and antitermination. Science 284, 611-615 (1999).
-
(1999)
Science
, vol.284
, pp. 611-615
-
-
Yamell, W.S.1
Roberts, J.W.2
-
56
-
-
0242321017
-
Role of the non-template strand of the elongation bubble in intrinsic transcription termination
-
Ryder, A. M. & Roberts, J. W. Role of the non-template strand of the elongation bubble in intrinsic transcription termination. J. Mol. Biol. 334, 205-213 (2003).
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 205-213
-
-
Ryder, A.M.1
Roberts, J.W.2
-
57
-
-
0038286179
-
RNA polymerase mutations that impair conversion to a termination- resistant complex by Q antiterminator proteins
-
Santangelo, T. J., Mooney, R. A., Landick, R. & Roberts, J. W. RNA polymerase mutations that impair conversion to a termination-resistant complex by Q antiterminator proteins. Genes Dev. 17, 1281-1292 (2003).
-
(2003)
Genes Dev.
, vol.17
, pp. 1281-1292
-
-
Santangelo, T.J.1
Mooney, R.A.2
Landick, R.3
Roberts, J.W.4
-
58
-
-
0023666140
-
Transcription termination factor rho is an RNA-DNA helicase
-
Brennan, C. A., Dombroski, A. J. & Platt, T. Transcription termination factor rho is an RNA-DNA helicase. Cell 48, 945-952 (1987).
-
(1987)
Cell
, vol.48
, pp. 945-952
-
-
Brennan, C.A.1
Dombroski, A.J.2
Platt, T.3
-
59
-
-
0026527507
-
Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rho
-
Jin, D. J., Burgess, R. R., Richardson, J. P. & Gross, C. A. Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rho. Proc. Natl Acad. Sci. USA 89, 1453-1457 (1992).
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 1453-1457
-
-
Jin, D.J.1
Burgess, R.R.2
Richardson, J.P.3
Gross, C.A.4
-
60
-
-
0030847146
-
Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 1. Characterization and analysis of the reaction
-
Walstrom, K. M., Dozono, J. M., Robic, S. & von Hippel, P. H. Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 1. Characterization and analysis of the reaction. Biochemistry 36, 7980-7992 (1997).
-
(1997)
Biochemistry
, vol.36
, pp. 7980-7992
-
-
Walstrom, K.M.1
Dozono, J.M.2
Robic, S.3
Von Hippel, P.H.4
-
61
-
-
0030848285
-
Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding
-
Walstrom, K. M., Dozono, J. M. & von Hippel, P. H. Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding. Biochemistry 36, 7993-8004 (1997).
-
(1997)
Biochemistry
, vol.36
, pp. 7993-8004
-
-
Walstrom, K.M.1
Dozono, J.M.2
Von Hippel, P.H.3
-
62
-
-
0032508387
-
Rho-dependent termination within the trp t' terminator. II. Effects of kinetic competition and rho processivity
-
Zhu, A. Q. & von Hippel, P. H. Rho-dependent termination within the trp t' terminator. II. Effects of kinetic competition and rho processivity. Biochemistry 37, 11215-11222 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 11215-11222
-
-
Zhu, A.Q.1
Von Hippel, P.H.2
-
63
-
-
0032508378
-
Rho-dependent termination within the trp t' terminator. I. Effects of rho loading and template sequence
-
Zhu, A. Q. & von Hippel, P. H. Rho-dependent termination within the trp t' terminator. I. Effects of rho loading and template sequence. Biochemistry 37, 11202-11214 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 11202-11214
-
-
Zhu, A.Q.1
Von Hippel, P.H.2
-
64
-
-
4344661527
-
Influence of substrate composition on the helicase activity of transcription termination factor Rho: Reduced processivity of Rho hexamers during unwinding of RNA-DNA hybrid regions
-
Walmacq, C., Rahmouni, A. R. & Boudvillain, M. Influence of substrate composition on the helicase activity of transcription termination factor Rho: reduced processivity of Rho hexamers during unwinding of RNA-DNA hybrid regions. J. Mol. Biol. 342, 403-420 (2004).
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 403-420
-
-
Walmacq, C.1
Rahmouni, A.R.2
Boudvillain, M.3
-
65
-
-
0019729701
-
Termination of transcription by nusA gene protein of Escherichia coli
-
Greenblatt, J., McLimont, M. & Hanly, S. Termination of transcription by nusA gene protein of Escherichia coli. Nature 292, 215-220 (1981).
-
(1981)
Nature
, vol.292
, pp. 215-220
-
-
Greenblatt, J.1
McLimont, M.2
Hanly, S.3
-
66
-
-
0026726828
-
NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage λ
-
Li, J., Horwitz, R., McCracken, S. & Greenblatt, J. NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage λ. J. Biol. Chem. 267, 6012-6019 (1992).
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 6012-6019
-
-
Li, J.1
Horwitz, R.2
McCracken, S.3
Greenblatt, J.4
-
67
-
-
0026527997
-
Requirement for E. coli NusG protein in factor-dependent transcription termination
-
Sullivan, S. L. & Gottesman, M. E. Requirement for E. coli NusG protein in factor-dependent transcription termination. Cell 68, 989-994 (1992).
-
(1992)
Cell
, vol.68
, pp. 989-994
-
-
Sullivan, S.L.1
Gottesman, M.E.2
-
68
-
-
0027749638
-
NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling
-
Nehrke, K. W., Zalatan, F. & Platt, T. NusG alters rho-dependent termination of transcription in vitro independent of kinetic coupling. Gene Expr. 3, 119-133 (1993).
-
(1993)
Gene Expr.
, vol.3
, pp. 119-133
-
-
Nehrke, K.W.1
Zalatan, F.2
Platt, T.3
-
69
-
-
0026095918
-
Assembly of transcription elongation complexes containing the N protein of phage λ and the Escherichia coli elongation factors NusA, NusB, NusG, and S10
-
Mason, S.W. & Greenblatt, J. Assembly of transcription elongation complexes containing the N protein of phage λ and the Escherichia coli elongation factors NusA, NusB, NusG, and S10. Genes Dev. 5, 1504-1512 (1991).
-
(1991)
Genes Dev.
, vol.5
, pp. 1504-1512
-
-
Mason, S.W.1
Greenblatt, J.2
-
70
-
-
10244264641
-
Components of multiprotein-RNA complex that controls transcription elongation in Escherichia coli phage λ
-
Das, A. et al. Components of multiprotein-RNA complex that controls transcription elongation in Escherichia coli phage λ. Methods Enzymol. 274, 374-402 (1996).
-
(1996)
Methods Enzymol.
, vol.274
, pp. 374-402
-
-
Das, A.1
-
71
-
-
0027453160
-
Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10
-
Nodwell, J. R. & Greenblatt, J. Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10. Cell 72, 261-268 (1993).
-
(1993)
Cell
, vol.72
, pp. 261-268
-
-
Nodwell, J.R.1
Greenblatt, J.2
-
72
-
-
0035898536
-
Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination
-
Torres, M., Condon, C., Balada, J. M., Squires, C. & Squires, C. L. Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination. EMBO J. 20, 3811-3820 (2001).
-
(2001)
EMBO J.
, vol.20
, pp. 3811-3820
-
-
Torres, M.1
Condon, C.2
Balada, J.M.3
Squires, C.4
Squires, C.L.5
-
73
-
-
0030979021
-
NusA is required for ribosomal antitermination and for modulation of the transcription elongation rate of both antiterminated RNA and mRNA
-
Vogel, U. & Jensen, K. F. NusA is required for ribosomal antitermination and for modulation of the transcription elongation rate of both antiterminated RNA and mRNA. J. Biol. Chem. 272, 12265-12271 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 12265-12271
-
-
Vogel, U.1
Jensen, K.F.2
-
75
-
-
0025976369
-
Transcript elongation and termination are competitive kinetic processes
-
von Hippel, P.H. & Yager, T.D. Transcript elongation and termination are competitive kinetic processes. Proc. Natl Acad. Sci. USA 88, 2307-2311 (1991). Sets up the transition-state approach to transcription kinetics.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 2307-2311
-
-
Von Hippel, P.H.1
Yager, T.D.2
-
76
-
-
0037058904
-
Reaction pathways in transcript elongation
-
von Hippel, P. H. & Pasman, Z. Reaction pathways in transcript elongation. Biophys. Chem. 101-102, 401-423 (2002). Provides a detailed discussion of the alternative reaction pathways in transcription.
-
(2002)
Biophys. Chem.
, vol.101-102
, pp. 401-423
-
-
Von Hippel, P.H.1
Pasman, Z.2
-
77
-
-
0031558773
-
Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage λ
-
Rees, W., Weitzel, S., Das, A. & von Hippel, P. Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage λ. J. Mol. Biol. 273, 797-893 (1997).
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 797-893
-
-
Rees, W.1
Weitzel, S.2
Das, A.3
Von Hippel, P.4
-
78
-
-
0023645154
-
Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7
-
Levin, J. R. & Chamberlin, M. J. Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7. J. Mol. Biol. 196, 61-84 (1987).
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 61-84
-
-
Levin, J.R.1
Chamberlin, M.J.2
-
79
-
-
0023711743
-
Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators
-
Arndt, K. M. & Chamberlin, M. J. Transcription termination in Escherichia coli. Measurement of the rate of enzyme release from Rho-independent terminators. J. Mol. Biol. 202, 271-285 (1988).
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 271-285
-
-
Arndt, K.M.1
Chamberlin, M.J.2
|