메뉴 건너뛰기




Volumn 87, Issue 4, 1996, Pages 767-777

Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLOBIN; OLIGONUCLEOTIDE; RNA POLYMERASE II;

EID: 0030584091     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)81395-1     Document Type: Article
Times cited : (122)

References (45)
  • 1
    • 0025294195 scopus 로고
    • RNA chain elongation by Escherichia coli RNA polymerase: Factors affecting the stability of elongating ternary complex
    • Arndt, K.M., and Chamberlin, M.J. (1990). RNA chain elongation by Escherichia coli RNA polymerase: factors affecting the stability of elongating ternary complex. J. Mol. Biol. 213, 79-108.
    • (1990) J. Mol. Biol. , vol.213 , pp. 79-108
    • Arndt, K.M.1    Chamberlin, M.J.2
  • 2
    • 0028894963 scopus 로고
    • The RNA polymerase II elongation complex
    • Aso, T., Conaway, J.W., and Conaway, R.C. (1995). The RNA polymerase II elongation complex. FASEB J. 9, 1419-1428.
    • (1995) FASEB J. , vol.9 , pp. 1419-1428
    • Aso, T.1    Conaway, J.W.2    Conaway, R.C.3
  • 3
    • 0029881387 scopus 로고    scopus 로고
    • Synergistic enhancement of both initiation and elongation by acidic transcription activation domains
    • Blair, W.S., Fridell, R.A., and Cullen, B.R. (1996). Synergistic enhancement of both initiation and elongation by acidic transcription activation domains. EMBO J. 15, 1658-1665.
    • (1996) EMBO J. , vol.15 , pp. 1658-1665
    • Blair, W.S.1    Fridell, R.A.2    Cullen, B.R.3
  • 5
    • 0027536870 scopus 로고
    • Transcript cleavage factors from E. Coli
    • Borukhov, S., Sagitov, V., and Goldfarb, A. (1993). Transcript cleavage factors from E. coli. Cell 72, 459-466.
    • (1993) Cell , vol.72 , pp. 459-466
    • Borukhov, S.1    Sagitov, V.2    Goldfarb, A.3
  • 6
    • 0028075950 scopus 로고
    • Proof-reading DNA: Recognition of aberrant DNA termini by the Klenow fragment of DNA polymerase I
    • Carver, T.E., Jr., Hochstrasser, R.A., and Millar, D.P. (1994). Proof-reading DNA: recognition of aberrant DNA termini by the Klenow fragment of DNA polymerase I. Proc. Natl. Acad. Sci. USA 91, 10670-10674.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10670-10674
    • Carver T.E., Jr.1    Hochstrasser, R.A.2    Millar, D.P.3
  • 7
    • 0027106595 scopus 로고
    • New models for the mechanism of transcription elongation and its regulation
    • Chamberlin, M. (1995). New models for the mechanism of transcription elongation and its regulation. Harvey Lect. 88, 1-21.
    • (1995) Harvey Lect. , vol.88 , pp. 1-21
    • Chamberlin, M.1
  • 8
    • 0024549097 scopus 로고
    • DNA substrate structural requirements for the exonuclease and polymerase activities of procaryotic and phage DNA polymerases
    • Cowart, M., Gibson, K.J., Allen, D.J., and Benkovic, S.J. (1989). DNA substrate structural requirements for the exonuclease and polymerase activities of procaryotic and phage DNA polymerases. Biochemistry 28, 1975-1983.
    • (1989) Biochemistry , vol.28 , pp. 1975-1983
    • Cowart, M.1    Gibson, K.J.2    Allen, D.J.3    Benkovic, S.J.4
  • 9
    • 0027321585 scopus 로고
    • Control of transcription termination by RNA-binding proteins
    • Das, A. (1993). Control of transcription termination by RNA-binding proteins. Annu. Rev. Biochem. 62, 893-930.
    • (1993) Annu. Rev. Biochem. , vol.62 , pp. 893-930
    • Das, A.1
  • 10
    • 0025783442 scopus 로고
    • Fidelity mechanisms in DNA replication
    • Echols, H., and Goodman, M.F. (1991). Fidelity mechanisms in DNA replication. Annu. Rev. Biochem. 60, 477-511.
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 477-511
    • Echols, H.1    Goodman, M.F.2
  • 11
    • 0027930269 scopus 로고
    • Grea-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure
    • Feng, G., Lee, D.N., Wang, D., Chan, C., and Landick, R. (1994). GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. J. Biol. Chem. 269, 22282-22294.
    • (1994) J. Biol. Chem. , vol.269 , pp. 22282-22294
    • Feng, G.1    Lee, D.N.2    Wang, D.3    Chan, C.4    Landick, R.5
  • 12
    • 0024564063 scopus 로고
    • Early transcribed sequences affect termination efficiency of Escherichia coli RNA polymerase
    • Goliger, J.A., Yang, X.J., Quo, H.C., and Roberts, J.W. (1989). Early transcribed sequences affect termination efficiency of Escherichia coli RNA polymerase. J. Mol. Biol. 205, 331-341.
    • (1989) J. Mol. Biol. , vol.205 , pp. 331-341
    • Goliger, J.A.1    Yang, X.J.2    Quo, H.C.3    Roberts, J.W.4
  • 13
    • 0029055758 scopus 로고
    • Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II
    • Gu, W., and Reines, D. (1995). Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II. J. Biol. Chem. 270, 11238-11244.
    • (1995) J. Biol. Chem. , vol.270 , pp. 11238-11244
    • Gu, W.1    Reines, D.2
  • 14
    • 0027425047 scopus 로고
    • Nascent RNA cleavage by arrested RNA polymerase II does not require upstream translocation of the elongation complex on DNA
    • Gu, W., Powell, W., Mote, J., Jr., and Reines, D. (1993). Nascent RNA cleavage by arrested RNA polymerase II does not require upstream translocation of the elongation complex on DNA. J. Biol. Chem. 268, 25604-25616.
    • (1993) J. Biol. Chem. , vol.268 , pp. 25604-25616
    • Gu, W.1    Powell, W.2    Mote J., Jr.3    Reines, D.4
  • 15
    • 0029957789 scopus 로고    scopus 로고
    • Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest
    • Gu, W., Wind, M., and Reines, D. (1996). Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest. Proc. Natl. Acad. Sci. USA 93, 6935-6940.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6935-6940
    • Gu, W.1    Wind, M.2    Reines, D.3
  • 16
    • 0022006228 scopus 로고
    • Separation and partial characterization of three functional steps in transcription initation by human RNA polymerase II
    • Hawley, D.K., and Roeder, R.G. (1985). Separation and partial characterization of three functional steps in transcription initation by human RNA polymerase II. J. Biol. Chem. 260, 8163-8172.
    • (1985) J. Biol. Chem. , vol.260 , pp. 8163-8172
    • Hawley, D.K.1    Roeder, R.G.2
  • 17
    • 0027764643 scopus 로고
    • Transcriptional pausing, arrest, and readthrough at the major late attenuation site
    • Hawley, D.K., Wiest, D.K., Holtz, M.S., and Wang, D. (1993). Transcriptional pausing, arrest, and readthrough at the major late attenuation site. Cell. Mol. Biol. Res. 39, 339-348.
    • (1993) Cell. Mol. Biol. Res. , vol.39 , pp. 339-348
    • Hawley, D.K.1    Wiest, D.K.2    Holtz, M.S.3    Wang, D.4
  • 18
    • 0027163013 scopus 로고
    • The increment of SII-facilitated transcript cleavage varies dramatically between elongation competent and incompetent RNA polymerase II ternary complexes
    • Izban, M.G., and Luse, D.S. (1993). The increment of SII-facilitated transcript cleavage varies dramatically between elongation competent and incompetent RNA polymerase II ternary complexes. J. Biol. Chem. 268, 12874-12885.
    • (1993) J. Biol. Chem. , vol.268 , pp. 12874-12885
    • Izban, M.G.1    Luse, D.S.2
  • 19
    • 0022344165 scopus 로고
    • Partial block to transcription of human adenovirus type 2 late genes in abortively infected monkey cells
    • Johnston, J.M., Anderson, K.P., and Klessig, D.F. (1985). Partial block to transcription of human adenovirus type 2 late genes in abortively infected monkey cells. J. Virol. 56, 378-385.
    • (1985) J. Virol. , vol.56 , pp. 378-385
    • Johnston, J.M.1    Anderson, K.P.2    Klessig, D.F.3
  • 20
    • 0028206048 scopus 로고
    • Function and structure relationships in DNA polymerases
    • Joyce, C.M., and Steitz, T.A. (1994). Function and structure relationships in DNA polymerases. Annu. Rev. Biochem. 63, 777-822.
    • (1994) Annu. Rev. Biochem. , vol.63 , pp. 777-822
    • Joyce, C.M.1    Steitz, T.A.2
  • 21
    • 0025044607 scopus 로고
    • Analysis of the signals for transcription termination by purified RNA polymerase II
    • Kerppola, T.K., and Kane, C.M. (1990). Analysis of the signals for transcription termination by purified RNA polymerase II. Biochemistry 29, 269-278.
    • (1990) Biochemistry , vol.29 , pp. 269-278
    • Kerppola, T.K.1    Kane, C.M.2
  • 22
    • 0025723937 scopus 로고
    • RNA polymerase: Regulation of transcript elongation and termination
    • Kerppola, T.K., and Kane, C.M. (1991). RNA polymerase: regulation of transcript elongation and termination. FASEB J. 5, 2833-2842.
    • (1991) FASEB J. , vol.5 , pp. 2833-2842
    • Kerppola, T.K.1    Kane, C.M.2
  • 23
    • 0027674020 scopus 로고
    • Common mechanisms for the control of eukaryotic transcriptional elongation
    • Krumm, A., Meulia, T., and Groudine, M. (1993). Common mechanisms for the control of eukaryotic transcriptional elongation. Bioessays 15, 659-665.
    • (1993) Bioessays , vol.15 , pp. 659-665
    • Krumm, A.1    Meulia, T.2    Groudine, M.3
  • 24
    • 0028924386 scopus 로고
    • Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation
    • Krumm, A., Hickey, L.B., and Groudine, M. (1995). Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation. Genes Dev. 9, 559-572.
    • (1995) Genes Dev. , vol.9 , pp. 559-572
    • Krumm, A.1    Hickey, L.B.2    Groudine, M.3
  • 25
    • 0026708877 scopus 로고
    • Structural analysis of ternary complexes of Escherichia coli RNA polymerase: Individual complexes halted along different transcription units have distinct and unexpected biochemical properties
    • Krummel, B., and Chamberlin, M.J. (1992). Structural analysis of ternary complexes of Escherichia coli RNA polymerase: individual complexes halted along different transcription units have distinct and unexpected biochemical properties. J. Mol. Biol. 225, 221-237.
    • (1992) J. Mol. Biol. , vol.225 , pp. 221-237
    • Krummel, B.1    Chamberlin, M.J.2
  • 26
    • 0027978145 scopus 로고
    • GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation
    • Lee, D.N., Feng, G., and Landick, R. (1994). GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation. J. Biol. Chem. 269, 22295-22303.
    • (1994) J. Biol. Chem. , vol.269 , pp. 22295-22303
    • Lee, D.N.1    Feng, G.2    Landick, R.3
  • 27
    • 0021709472 scopus 로고
    • Pausing and premature termination of human RNA polymerase II during transcription of adenovirus in vivo and in vitro
    • Maderious, A., and Chen-Kiang, S. (1984). Pausing and premature termination of human RNA polymerase II during transcription of adenovirus in vivo and in vitro. Proc. Natl Acad. Sci. USA 81, 5931-5935.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 5931-5935
    • Maderious, A.1    Chen-Kiang, S.2
  • 28
    • 0029983157 scopus 로고    scopus 로고
    • Protein-RNA interactions in the active center of transcription elongation complex
    • Markovtsov, V., Mustaev, A., and Goldfarb, A. (1996). Protein-RNA interactions in the active center of transcription elongation complex. Proc. Natl. Acad. Sci. USA 93, 3221-3226.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 3221-3226
    • Markovtsov, V.1    Mustaev, A.2    Goldfarb, A.3
  • 29
    • 0021676706 scopus 로고
    • Premature termination by human RNA polymerase II occurs temporally in the adenovirus major late transcription unit
    • Mok, M., Maderious, A., and Chen-Kiang, S. (1984). Premature termination by human RNA polymerase II occurs temporally in the adenovirus major late transcription unit. Mol. Cell. Biol. 4, 2031-2040.
    • (1984) Mol. Cell. Biol. , vol.4 , pp. 2031-2040
    • Mok, M.1    Maderious, A.2    Chen-Kiang, S.3
  • 30
    • 0028066790 scopus 로고
    • Discontinuous mechanism of transcription elongation
    • Nudler, E., Goldfarb, A., and Kashlev, M. (1994). Discontinuous mechanism of transcription elongation. Science 265, 793-796.
    • (1994) Science , vol.265 , pp. 793-796
    • Nudler, E.1    Goldfarb, A.2    Kashlev, M.3
  • 31
    • 0029066765 scopus 로고
    • Coupling between transcription termination and RNA polymerase inch-worming
    • Nudler, E., Kashlev, M., Nikiforov, V., and Goldfarb, A. (1995). Coupling between transcription termination and RNA polymerase inch-worming. Cell 81, 351-357.
    • (1995) Cell , vol.81 , pp. 351-357
    • Nudler, E.1    Kashlev, M.2    Nikiforov, V.3    Goldfarb, A.4
  • 32
    • 0023250367 scopus 로고
    • Factors involved in specific transcription by mammalian RNA polymerase II: Transcription factor SII stimulates elongation of RNA chains
    • Reinberg, D., and Roeder, R.G. (1987). Factors involved in specific transcription by mammalian RNA polymerase II: transcription factor SII stimulates elongation of RNA chains. J. Biol. Chem. 262, 3331-3337.
    • (1987) J. Biol. Chem. , vol.262 , pp. 3331-3337
    • Reinberg, D.1    Roeder, R.G.2
  • 33
    • 0024370643 scopus 로고
    • Transcription elongation factor SII (TFIIS) enables RNA polymerase to elongate through a block to transcription in a human gene in vitro
    • Reines, D., Chamberlin, M.J., and Kane, C.M. (1989). Transcription elongation factor SII (TFIIS) enables RNA polymerase to elongate through a block to transcription in a human gene in vitro. J. Biol. Chem. 264, 10799-10809.
    • (1989) J. Biol. Chem. , vol.264 , pp. 10799-10809
    • Reines, D.1    Chamberlin, M.J.2    Kane, C.M.3
  • 34
    • 0000483406 scopus 로고
    • Antitermination and the control of transcription elongation
    • S.L. McKnight and K.R. Yamamoto, eds. (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press)
    • Roberts, J. (1992). Antitermination and the control of transcription elongation. In Transcriptional Regulation, S.L. McKnight and K.R. Yamamoto, eds. (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press), pp. 389-406.
    • (1992) Transcriptional Regulation , pp. 389-406
    • Roberts, J.1
  • 35
    • 0028059269 scopus 로고
    • The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes
    • Rudd, M.D., Izban, M.G., and Luse, D.S. (1994). The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes. Proc. Natl. Acad. Sci. USA 91, 8057-8061.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 8057-8061
    • Rudd, M.D.1    Izban, M.G.2    Luse, D.S.3
  • 36
    • 0024354857 scopus 로고
    • Comparison of human and monkey cells for the ability to attenuate transcripts that begin at the adenovirus major late promoter
    • Seiberg, M., Aloni, Y., and Levine, A.J. (1989). Comparison of human and monkey cells for the ability to attenuate transcripts that begin at the adenovirus major late promoter. J. Virol. 63, 4093-4096.
    • (1989) J. Virol. , vol.63 , pp. 4093-4096
    • Seiberg, M.1    Aloni, Y.2    Levine, A.J.3
  • 37
    • 0025076247 scopus 로고
    • Purified elongation factor SII (TFIIS) enables RNA polymerase to elongate through a block to transcription in a human gene in vitro
    • SivaRaman, L., Reines, D., and Kane, C.M. (1990). Purified elongation factor SII (TFIIS) enables RNA polymerase to elongate through a block to transcription in a human gene in vitro. J. Biol. Chem. 265, 14554-14560.
    • (1990) J. Biol. Chem. , vol.265 , pp. 14554-14560
    • Sivaraman, L.1    Reines, D.2    Kane, C.M.3
  • 38
    • 0025340514 scopus 로고
    • Transcription elongation and eukaryotic gene regulation
    • Spencer, C.A., and Groudine, M. (1990). Transcription elongation and eukaryotic gene regulation. Oncogene 5, 777-785.
    • (1990) Oncogene , vol.5 , pp. 777-785
    • Spencer, C.A.1    Groudine, M.2
  • 39
    • 0024564062 scopus 로고
    • Sequences linked to prokaryotic promoters can effect the efficiency of downstream termination sites
    • Telesnitsky, A.P.W., and Chamberlin, M.J. (1989). Sequences linked to prokaryotic promoters can effect the efficiency of downstream termination sites. J. Mol. Biol. 205, 315-330.
    • (1989) J. Mol. Biol. , vol.205 , pp. 315-330
    • Telesnitsky, A.P.W.1    Chamberlin, M.J.2
  • 40
    • 0029029468 scopus 로고
    • Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex
    • Wang, D., Meier, T.I., Chan, C.L., Feng, G., Lee, D.N., and Landick, R. (1995). Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex. Cell 81, 341-350.
    • (1995) Cell , vol.81 , pp. 341-350
    • Wang, D.1    Meier, T.I.2    Chan, C.L.3    Feng, G.4    Lee, D.N.5    Landick, R.6
  • 41
    • 0025047445 scopus 로고
    • In vitro analysis of a transcription termination site for RNA polymerase II
    • Wiest, D.K., and Hawley, D.K. (1990). In vitro analysis of a transcription termination site for RNA polymerase II. Mol. Cell. Biol. 10, 5782-5795.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 5782-5795
    • Wiest, D.K.1    Hawley, D.K.2
  • 42
    • 0026774630 scopus 로고
    • Mechanistic studies of transcription arrest at the adenovirus major late attenuation site
    • Wiest, D.K., Wang, D., and Hawley, D.K. (1992). Mechanistic studies of transcription arrest at the adenovirus major late attenuation site. J. Biol. Chem. 267, 7733-7744.
    • (1992) J. Biol. Chem. , vol.267 , pp. 7733-7744
    • Wiest, D.K.1    Wang, D.2    Hawley, D.K.3
  • 43
    • 0026084789 scopus 로고
    • A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli
    • Yager, T.D., and von Hippel, P.H. (1991). A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli. Biochemistry 30, 1097-1118.
    • (1991) Biochemistry , vol.30 , pp. 1097-1118
    • Yager, T.D.1    Von Hippel, P.H.2
  • 44
    • 0028236808 scopus 로고
    • Transcriptional elongation by RNA polymerase II is stimulated by transactivators
    • Yankulov, K., Blau, J., Purton, T., Roberts, S., and Bentley, D.L. (1994). Transcriptional elongation by RNA polymerase II is stimulated by transactivators. Cell 77, 749-759.
    • (1994) Cell , vol.77 , pp. 749-759
    • Yankulov, K.1    Blau, J.2    Purton, T.3    Roberts, S.4    Bentley, D.L.5
  • 45
    • 0028859150 scopus 로고
    • Novel mechanism and factor for regulation by HIV-1 tat
    • Zhou, Q.A., and Sharp, P.A. (1995). Novel mechanism and factor for regulation by HIV-1 tat. EMBO J. 14, 321-328.
    • (1995) EMBO J. , vol.14 , pp. 321-328
    • Zhou, Q.A.1    Sharp, P.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.