Functional topography of nascent RNA in elongation intermediates of RNA polymerase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 25, 1998, Pages 14699-14704

  Komissarova, Natalia ^a   Kashlev, Mikhail ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELONGATION FACTOR; OLIGONUCLEOTIDE; RIBONUCLEASE T1; RNA POLYMERASE;

ARTICLE; CROSS LINKING; DNA FOOTPRINTING; DNA TEMPLATE; DNA TRANSCRIPTION; ENZYME INACTIVATION; ENZYME PHOSPHORYLATION; PRIORITY JOURNAL; RNA HYBRIDIZATION; TOPOGRAPHY;

DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; RNA, BACTERIAL; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 0032438195     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.25.14699     Document Type: Article

References (33)

1. Uptain, S. M., Kane, C. M. & Chamberlin, M. J. (1997) Annu. Rev. Biochem. 66, 117-172.
2. Yager, T. D. & von Hippel, P. (1987) in Escherichla coli and Salmonella typhimurium: Cellular and Molecular Biology, eds. Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. & Umbarger, H. E. (Am. Soc. Microbiol., Washington, DC), pp. 1241-1275.
3. Richardson, J. P. & Greenblatt, J. (1996) in Escherichla coli and Salmonella: Cellular and Molecular Biology, eds. Neidhardt, F. C., Curtiss, R., Ingraham, J. L., Lin, E. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E. (Am. Soc. Microbiol., Washington, DC), 2nd Ed., pp. 822-848.
4. Landick, R. (1997) Cell 88, 741-744.
5. Das, A. (1993) Annu. Rev. Biochem. 62, 893-930.
6. Chan, C. L. & Landick, R. (1994) in Transcription: Mechanisms and Regulation, eds. Conaway, R. C. & Conaway, J. W. (Raven, New York), pp. 297-321.
7. Kumar, S. A. & Krakow, J. S. (1975) J. Biol. Chem. 250, 2878-2884.
8. Lee, D. N. & Landick, R. (1992) J. Mol. Biol. 228, 759-777.
9. Gu, W., Wind, M. & Reines, D. (1996) Proc. Natl. Acad. Sci. USA 93, 6935-6940.
10. Monforte, J. A., Kahn, J. D. & Hearst, J. E. (1990) Biochemistry 29, 7882-7890.
11. Hanna, M. M. & Meares, C. F. (1983) Proc. Natl. Acad. Sci. USA 80, 4238-4242.
12. Gamper, H. B. & Hearst, J. E. (1982) Cell 29, 81-90.
13. Yager, T. D. & von Hippel, P. (1991) Biochemistry 30, 1097-1118.
14. Nudler, E., Mustaev, A., Lukhtanov, E. & Goldfarb, A. (1997) Cell 89, 33-41.
15. Rice, G. A., Kane, C. M. & Chamberlin, M. J. (1991) Proc. Natl. Acad. Sci. USA 88, 4245-4249.
16. Chamberlin, M. J. (1994) Harvey Lect. 88, 1-21.
17. Altmann, C. R., Solow-Cordero, D. E. & Chamberlin, M. J. (1994) Proc. Natl. Acad. Sci. USA 91, 3784-3788.
18. Severinov, K. & Goldfarb, A. (1994) J. Biol. Chem. 269, 31701-31705.
19. Borukhov, S., Sagitov, V., Josaitis, C. A., Course, R. L. & Goldfarb, A. (1993) J. Biol. Chem. 268, 23477-23482.
20. Kashlev, M., Nudler, E., Severinov, K., Borukhov, S., Komissarova, N. & Goldfarb, A. (1996) Methods Enzymol. 274, 326-333.
21. Komissarova, N. & Kashlev, M. (1997) Proc. Natl. Acad. Sci. USA 94, 1755-1760.
22. Borukhov, S., Sagitov, V. & Goldfarb, A. (1993) Cell 72, 459-466.
23. Komissarova, N. & Kashlev, M. (1997) J. Biol. Chem. 272, 15329-15338.
24. Kashlev, M., Martin, E., Polyakov, A., Severinov, K., Nikiforov, V. & Goldfarb, A. (1993) Gene 130, 9-14.
25. Wang, D., Meier, T. I., Chan, C. L., Feng, G., Lee, D. N. & Landick, R. (1995) Cell 81, 341-350.
26. Feng, G. H., Lee, D. N., Wang, D., Chan, C. L. & Landick, R. (1994) J. Biol. Chem. 269, 22282-22294.
27. Orlova, M., Newlands, J., Das, A., Goldfarb, A. & Borukhov, S. (1995) Proc. Natl. Acad. Sci. USA 92, 4596-4600.
28. Yakovlev, G., Moiseyev, G. P., Sorrentino, S., De Prisco, R. & Libonati, M. (1997) J. Biomol. Struct. Dyn. 15, 243-250.
29. Arndt, K. M. & Chamberlin, M. J. (1990) J. Mol. Biol. 213, 79-108.
30. Nudler, E., Goldfarb, A. & Kashlev, M. (1994) Science 265, 793-796.
31. Nudler, E., Avetissova, E., Markovtsov, V. & Goldfarb, A. (1996) Science 273, 211-217.
32. Sidorenkov, I., Komissarova, N. & Kashlev, M. (1998) Mol. Cell 2, 55-64.
33. Rozovskaya, T. A., Chenchik, A. A. & Beabealashvilli, R. S. (1982) FEBS Lett. 137, 100-104.