Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 1. Characterization and analysis of the reaction

Biochemistry

Volumn 36, Issue 26, 1997, Pages 7980-7992

  Walstrom, Katherine M ^a   Dozono, Jody M ^a   Robic, Srebrenka ^a,b   Von Hippel, Peter H ^a  

^a UNIVERSITY OF OREGON   (United States)

^b BELOIT COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA HYBRID; HELICASE; OLIGONUCLEOTIDE;

ANALYTIC METHOD; ARTICLE; DNA SEQUENCE; DNA TEMPLATE; ENZYME ACTIVITY; ENZYME KINETICS; ENZYME MECHANISM; NONHUMAN; PRIORITY JOURNAL; REACTION ANALYSIS; RNA SEQUENCE; SEQUENCE HOMOLOGY; STOICHIOMETRY; TRANSCRIPTION REGULATION; TRANSCRIPTION TERMINATION;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; BASE SEQUENCE; DNA HELICASES; DNA, BACTERIAL; ESCHERICHIA COLI; KINETICS; MOLECULAR SEQUENCE DATA; POTASSIUM CHLORIDE; RHO FACTOR; RNA NUCLEOTIDYLTRANSFERASES; RNA, BACTERIAL; TRANSCRIPTION, GENETIC; TRANSLOCATION, GENETIC;

ESCHERICHIA COLI;

EID: 0030847146     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi963179s     Document Type: Article

References (49)

1. Richardson, J. P. (1996) J. Biol. Chem. 271, 1251-1254.
2. Bear, D. G., and Peabody, D. S. (1988) Trends Biochem. Sci. 13, 343-347.
3. Yager, T. D., and von Hippel, P. H. (1987) in E. coli and S. typhimurium: Cellular and Molecular Biology (Neidhardt, F. C., Ed.) pp 1241-1275, American Society of Microbiology, Washington, D.C.
4. Platt, T., and Richardson, J. P. (1992) in Transcriptional Regulation (McKnight, S. L., and Yamamoto, K. R., Eds.) pp 365-388, Cold Spring Harbor Laboratory Press, Plainview, NY.
5. Platt, T. (1994) Mol. Microbiol. 11, 983-990.
6. Brennan, C. A., Dombroski, A. J., and Platt, T. (1987) Cell 48, 945-952.
7. Nudler, E., Mustaev, A., Lukhtanov, E., and Goldfarb, A. (1997) Cell 89, 33-41.
8. Finger, L. R., and Richardson, J. P. (1982) J. Mol. Biol. 156, 203-219.
9. Geiselmann, J., Yager, T. D., Gill, S. C., Calmettes, P., and von Hippel, P. H. (1992) Biochemistry 31, 111-121.
10. Geiselmann, J., Yager, T. D., and von Hippel, P. H. (1992) Protein Sci. 1, 861-873.
11. Gogol, E. P., Seifried, S. E., and von Hippel, P. H. (1991) J. Mol. Biol. 221, 1127-1138.
12. Seifried, S. E., Bjornson, K. P., and von Hippel, P. H. (1991) J. Mol. Biol. 221, 1139-1151.
13. Lowery-Goldhammer, C., and Richardson, J. P. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 2003-2007.
14. Morgan, W. D., Bear, D. G., Litchman, B. L., and von Hippel, P. H. (1985) Nucleic Acids Res. 13, 3739-3754.
15. Chen, C.-Y. A., and Richardson, J. P. (1987) J. Biol. Chem. 262, 11292-11299.
16. Alifano, P., Rivellini, F., Limauro, D., Bruni, C. B., and Carlomagno, S. M. (1991) Cell 64, 553-563.
17. Ceruzzi, M. A. F., Bektesh, S. L., and Richardson, J. P. (1985) J. Biol. Chem. 260, 9412-9418.
18. Galluppi, G. R., and Richardson, J. P. (1980) J. Mol. Biol. 138, 513-539.
19. Geiselmann, J., Wang, Y., Seifried, S. E., and von Hippel, P. H. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 7754-7758.
20. Reisbig, R. R., and Hearst, J. E. (1981) Biochemistry 20, 1907-1918.
21. Lau, L. F., Roberts, J. W., and Wu, R. (1983) J. Biol. Chem. 258, 9391-9397.
22. Morgan, W. D., Bear, D. G., and von Hippel, P. H. (1983) J. Biol. Chem. 258, 9553-9564.
23. Morgan, W. D., Bear, D. G., and von Hippel, P. H. (1983) J. Biol. Chem. 258, 9565-9574.
24. Jin, D. J., Burgess, R. R., Richardson, J. P., and Gross, C. A. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 1453-1457.
25. Greenblatt, J., McLimont, M., and Hanly, S. (1981) Nature 292, 215-220.
26. Yang, X. J., and Roberts, J. W. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 5301-5305.
27. Brennan, C. A., Steinmetz, E. J., Spear, P., and Platt, T. (1990) J. Biol. Chem. 265, 5440-5447.
28. Steinmetz, E. J., Brennan, C. A., and Platt, T. (1990) J. Biol. Chem. 265, 18408-18413.
29. Brennan, C. A., and Platt, T. (1991) J. Biol. Chem. 266, 17296-17305.
30. Walstrom, K. M., Dozono, J. M., and von Hippel, P. H. (1997) Biochemistry (following paper in this issue).
31. Nehrke, K. W., Seifried, S. E., and Platt, T. (1992) Nucleic Acids Res. 20, 6107.
32. Wu, A. M., Christie, G. E., and Platt, T. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 2913-2917.
33. Chamberlin, M. J., and Patterson, D. L. (1965) J. Mol. Biol. 12, 410-428.
34. Ts'o, P. O. P., Rapaport, S. A., and Bollum, F. J. (1966) Biochemistry 5, 4153-4170.
35. Wong, I., and Lohman, T. M. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 5428-5432.
36. Zuker, M., and Stiegler, P. (1981) Nucleic Acids Res. 9, 133-148.
37. McSwiggen, J. A., Bear, D. G., and von Hippel, P. H. (1988) J. Mol. Biol. 199, 609-622.
38. Bear, D. G., Hicks, P. S., Escudero, K. W., Andrews, C. L., McSwiggen, J. A., and von Hippel, P. H. (1988) J. Mol. Biol. 199, 623-635.
39. Seifried, S. E., Easton, J. B., and von Hippel, P. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 10454-10458.
40. Steinmetz, E. J., and Platt, T. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 1401-1405.
41. Faus, I., and Richardson, J. P. (1989) Biochemistry 28, 3510-3517.
42. Ruteshouser, E. C., and Richardson, J. P. (1989) J. Mol. Biol. 208, 23-43.
43. Gutfreund, H. (1995) Kinetics for the Life Sciences. Receptors, Transmitters, and Catalysis, Cambridge University Press, Cambridge, England.
44. Ali, J. A., and Lohman, T. M. (1997) Science 275, 377-380.
45. Vogel, U., and Jensen, K. F. (1994) J. Bacteriol. 176, 2807-2813.
46. Leirmo, S., Harrison, C., Cayley, D. S., Burgess, R. R., and Record, M. T., Jr. (1987) Biochemistry 26, 2095-2101.
47. Richardson, L. V., and Richardson, J. P. (1996) J. Biol. Chem. 271, 21597-21603.
48. Zalatan, F., and Platt, T. (1992) J. Biol. Chem. 267, 19082-19088.
49. Zalatan, F., Galloway-Salvo, J., and Platt, T. (1993) J. Biol. Chem. 268, 17051-17056.