Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 5, 1996, Pages 1930-1934

  Lockhart, Peter J ^a   Larkum, Anthony W D ^b   Steel, Michael A ^c   Waddell, Peter J ^a   Penny, David ^a  

^a MASSEY UNIVERSITY   (New Zealand)

^b UNIVERSITY OF SYDNEY   (Australia)

^c UNIVERSITY OF CANTERBURY   (New Zealand)

Author keywords

anciently diverged sequences; evolutionary trees; photosynthetic reaction centers; sites free to vary

Indexed keywords

BACTERIOCHLOROPHYLL; CHLOROPHYLL;

ARTICLE; CELLULAR DISTRIBUTION; ENZYME ACTIVE SITE; EVOLUTION; GENE SEQUENCE; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYNTHESIS; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

BACTERIOCHLOROPHYLLS; CHLOROPHYLL; CODON; CYANOBACTERIA; NITROGENASE; OXIDOREDUCTASES; PHOTOSYNTHESIS; PHYLOGENY; PLANT PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0029935637     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.5.1930     Document Type: Article

References (29)

1. Schidlowski, M. J. (1991) Southeast Asian Earth Sci. 5, 333-337.
2. Schopf, J. W. (1993) Science 260, 640-646.
3. Olson, J. M. (1970) Science 168, 438-446.
4. Larkum, A. W. D. (1991) in Chlorophylls, ed. Scheer, H. (CRC, Boca Raton, FL), pp. 367-383.
5. Olsen, G. J. & Woese, C. R. (1993) FASEB J. 7, 113-123.
6. Klenk, H.-P., Palm, P. & Zillig, W. (1994) Syst. Appl. Microbiol. 16, 638-647.
7. Gogarten, J. P. (1995) Trends Ecol. Evol. 10, 147-151.
8. Adachi, J. & Hasegawa, M. (1992) Comput. Sci. Monogr. Inst. Statist. Math. 27, 1-77.
9. Lake, J. A. (1994) Proc. Natl. Acad. Sci. USA 91, 1455-1459.
10. Lockhart, P. J., Steel, M. A., Hendy, M. D. & Penny, D. (1994) Mol. Biol. Evol. 11, 605-612.
11. Granick, S. (1965) in Evolving Genes and Proteins, eds. Bryson, V. & Vogel, H. J. (Academic, New York), pp. 67-68.
12. Burke, D. H., Hearst, J. E. & Sidow, A. (1993) Proc. Natl. Acad. Sci. USA 90, 7134-7138.
13. Meyer, T. E., Cusanovich, M. A. & Kamen, M. D. (1986) Proc. Natl. Acad. Sci. USA 83, 217-220.
14. Lockhart, P. J., Howe, C. J., Bryant, D. A., Beanland, T. J. & Larkum, A. W. D. (1992) J. Mol. Evol. 34, 153-162.
15. Albert, V. A., Backlund, A., Bremer, K., Chase, M. W., Manhart, J. R., Mishler, B. D. & Nixon, K. C. (1994) Ann. Missouri. Bot. Gard. 81, 534-555.
16. Felsenstein, J. (1978) Syst. Zool. 27, 401-410.
17. Hendy, M. D. & Penny, D. (1989) Syst. Zool. 38, 297-309.
18. Penny, D., Lockhart, P. J., Steel, M. A. & Hendy, M. D. (1994) in Models in Phylogeny Reconstruction, eds. Scotland, R. W., Siebert, D. J. & Williams, D. M., Systematics Association Special Volume No. 52 (Clarendon, Oxford), pp. 211-230.
19. Corpet, F. (1988) Nucleic Acids Res. 16, 10881-10891.
20. Felsenstein, J. (1993) PHYLIP 3.5 Manual (Univ. of California Herbarium, Berkeley).
21. Sidow, A., Nguyen, T. & Speed, T. P. (1992) J. Mol. Evol. 35, 253-260.
22. Penny, D., Watson, E. E., Hickson, R. E. & Lockhart, P. J. (1993) N.Z. J. Bot. 31, 275-288.
23. Kishino, H. & Hasegawa, M. (1989) J. Mol. Evol. 29, 170-179.
24. Sidow, A. & Wilson, A. C. (1990) J. Mol. Evol. 31, 51-68.
25. Shoemaker, J. S. & Fitch, W. M. (1989) Mol. Biol. Evol. 6, 270-289.
26. Buttner, M., Xie, D.-L., Nelson, H., Pinther, W., Hauska, G. & Nelson, N. (1992) Proc. Natl. Acad. Sci. USA 89, 8135-8139.
27. Steel, M. A., Hendy, M. D. & Penny, D. (1995) Universtat Bielefeld Forschungsschwerpunk Mathematisierung-Strukturbildingsprozesse, preprint XCIV.
28. Mauzerall, D. (1973) Ann. N.Y. Acad. Sci. 206, 483-492.
29. Larkum, A. W. D. (1992) in Research in Photosynthesis, ed. Murata, N. (Kluwer, Dordrecht, The Netherlands), Vol. 3, pp. 475-480.