Phylogeny of basal angiosperms: Analyses of five genes from three genomes

International Journal of Plant Sciences

Volumn 161, Issue 6 SUPPL., 2000, Pages

  Qiu, Y L ^a   Lee, J ^a   Bernasconi Quadroni, F ^a   Soltis, D E ^a   Soltis, P S ^a   Zanis, M ^a   Zimmer, E A ^a   Chen, Z ^a   Savolainen, V ^a   Chase, M W ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Amborella; ANITA; Basal angiosperms; Euangiosperms; Eumagnoliids; Gymnosperm s; Multigene analysis; Phylogeny

Indexed keywords

ANALYTIC METHOD; ANGIOSPERM; GENETIC LINE; GNETALES; GYMNOSPERM; MITOCHONDRIAL DNA; NUCLEOTIDE SEQUENCE; PHYLOGENY;

AMBORELLA; AUSTROBAILEYA; AUSTROBAILEYALES; CANELLALES; CONIFEROPHYTA; EMBRYOPHYTA; GNETALES; GNETUM; GYMNOSPERMAE; LAURALES; MAGNOLIALES; MAGNOLIOPHYTA; NYMPHAEALES; PIPERALES; TRIMENIACEAE; WELWITSCHIA;

EID: 0033677575     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/317584     Document Type: Article

References (171)

1. The use of rubisco DNA sequences to examine the systematic position of Hernandia albiflora (CT White) Kubitzki (Hernandiaceae), and relationships among the Laurales
2. On the origin of angiosperms
3. Origin of angiosperms: Need for a broadened outlook
4. Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny
5. Sieve-element characters
6. Sieve-element plastids, phloem protein, and evolution of flowering plants. III. Magnoliidae
7. The phylogenetic taxonomy of flowering plants
8. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
9. Phylogeny of seed plants based on all three plant genomic compartments: Extant gymnosperms are monophyletic and Gnetales are derived conifers
10. Effects of RNA editing and gene processing on phylogenetic reconstruction
11. The spores and pollen of the Potomac Group of Maryland
12. Palynology and age of the Lower Cretaceous basal Kurnub Group from the coastal plain to the northern Negev of Israel
13. The Piperales and the monocots: Alternative hypotheses for the origin of monocotyledonous flowers
14. Heresy revived: The monocot theory of angiosperm origin
15. Wood anatomy of Trimeniaceae
16. Presence of vessels in wood of Sarcandra (Chloranthaceae): Comments on vessel origins in angiosperms
17. Wood anatomy and stem of Chloranthus: Summary of wood anatomy of Chloranthaceae, with comments on relationships, vessellessness, and the origin of monocotyledons
18. Wood, bark, and stem anatomy of Gnetales: A summary
19. Anatomical studies of Amborella
20. Double fertilization in Gnetum gemon: The relationship between the cell cycle and sexual reproduction
21. Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
22. Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
23. Molecular phylogeny of extant gymnosperms and seed plant evolution: Analysis of nuclear 18S rRNA sequences
24. Pollen wall ultrastructure of Clavatipollenites incisus Chlonova and two modern species of Ascarina (Chloranthaceae)
25. Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family
26. British Mesozoic microspores and pollen grains
27. Phylogenetic analysis of seed plants and the origin of angiosperms
28. Paleobotanical evidence on the early radiation of non-magnoliid dicotyletons
29. Lower Cretaceous angiosperm flowers: Fossil evidence on early radiation of dicotyledons
30. Palaeobotanical evidence on the early radiation of magnoliid angiosperms
31. The origin and early diversification of angiosperms
32. Early Cretaceous (early to middle Albian) Platanoid inflorescences associated with Sapindopsis leaves from the Potomac Group of eastern North America
33. General aspects of angiosperm evolution and macrosystematics
34. Major clades of the angiosperms
35. Letters of Charles Darwin to J. D. Hooker
36. Early angiosperm reproduction: An introductory report
37. Toward a new synthesis: Major evolutionary trends m the angiosperm fossil record
38. Phylogenetic analysis of angiosperms and the relationships of Hamamelidae
39. Seed plant phylogeny: Demise of the anthophyte hypothesis?
40. Cretaceous angiosperm pollen of the Atlantic Coastal Plain and its evolutionary significance
41. Origin of angiosperms
42. Seed plant phylogeny and the relationships of Gnetales
43. Phylogeny of vascular plants
44. Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach
45. Morphological phylogenetic analysis of basal angiosperms: Comparison and combination with molecular data
46. Pollen and leaves from the mid-Cretaceous Potomac group and their bearing on early angiosperm evolution
47. Diversification of early angiosperm pollen in a cladistic context
48. Gene trees and species trees: Molecular systematics as one-character taxonomy
49. A rapid DNA isolation procedure for small quantities of fresh leaf tissue
50. Phylogenetic hypotheses for the monocotyledons constructed from rbcL sequence data
51. Chromosome number and evolution in primitive angiosperms
52. Reproductive structures and phylogenetic significance of extant primitive angiosperms
53. The Chloranthaceae: Reproductive structures and phylogenetic position
54. Evolution of reproductive structures and functions in primitive angiosperms (Magnoliidae)
55. The diversity of stamen structures and dehiscence patterns among Magnoliidae
56. Gynoecium diversity and systematics of the Laurales
57. Gynoecium structure and evolution in basal angiosperms
58. Cases in which parsimony and compatibility methods will be positively misleading
59. Toward defining the course of evolution: Minimal change for a specific tree topology
60. Double fertilization in Ephedra, a nonflowering seed plant: Its bearing on the origin of angiosperms
61. Double fertilization in nonflowering seed plants and its relevance to the origin of flowering plants
62. Evidence of a pre-angiosperm origin of endosperm: Implications for the evolution of flowering plants
63. Double fertilization in Gnetales: Implications for understanding reproductive diversification among seed plants
64. Floral evidence for Cretaceous chloranthoid angiosperms
65. Reproductive structures of Cretaceous Platanaceae
66. Time of appearance of floral features
67. Angiosperm floral structures from the Early Cretaceous of Portugal
68. Early angiosperm diversification: The diversity of pollen associated with angiosperm reproductive structures in Early Cretaceous floras from Portugal
69. Reproductive structure and organization of basal angiosperms from the Early Cretaceous (Barremian or Aptian) of western Portugal
70. The mostly male theory of flower evolutionary origins: From genes to fossils
71. Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support Gnetalean affinities of angiosperms
72. Chemical dichotomies in the Magnolialean complex
73. A chemosystematic overview of Magnoliidae, Ranunculidae, Caryophyllidae and Hamamelidae
74. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
75. Is it better to add taxa or characters to a difficult phylogenetic problem?
76. Provisional scheme of the natural (phylogenetic) system of flowering plants
77. Ribosomal RNA as a phylogenetic tool in plant systematics
78. Phylogeny of gymnosperms inferred from rbcL gene sequences
79. Cyanogenic compounds as systematic markers in Tracheophyta
80. The fossil history of the monocotyledons
81. Early Cretaceous fossil evidence for angiosperm evolution
82. The bases of angiosperm phylogeny: Vegetative morphology
83. Inferring complex phylogenies
84. The utility of atpB gene sequences in resolving phylogenetic relationships: Comparison with rbcL and 18S ribosomal DNA sequences in the Lardizabalaceae
85. Phylogeny of the Proteaceae based on atpB and atpB/rbcL intergenic spacer region sequences
86. Data congruency and phylogeny of the Papaveraceae s. l. based four data sets: atpB and rbcL sequences, trnK restriction sites, and morphological characters
87. Phylogeny of basal eudlcots based on three molecular data sets: atpB, rbcL, and 18S nuclear ribosomal DNA sequences
88. Barremian earliest angiosperm pollen
89. Records of angiospermid pollen entry into the English early Cretaceous succession
90. Gynoecium diversity and systematics of the paleoherbs
91. Molecular systematics of the Trilliaceae sensu lato as inferred from rbcL seqeuence data
92. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
93. Molecular evolution of genes controlling petal and stamen development: Duplication and divergence within the APETALA 3 and PISTILLATA MADS-box gene lineages
94. Cretaceous flowers from Kazakhstan
95. Introduction
96. Micromolecular patterns and the evolution and major classification of angiosperms
97. Paiynoigical data for the history of the Chloranthaceae
98. A compound ovary with open carpels in Winteraceae (Magnoliales): Evolutionary implications
99. Phylogenetic studies in Alismatidae. II. Evolution of marine angiosperms (seagrasses) and hydrophily
100. Molecular evolutionary history of ancient aquatic angiosperms
101. Phylogeny, classification and floral evolution of water lilies (Nymphaeaceae; Nymphaeales): A synthesis of non-molecular, rbcL, marK, and 18S rDNA data
102. So, what about the molecular clock hypothesis?
103. Cladistics of the Spermatophyta
104. Cladistics of the Magnoliidae
105. Studies of angiosperm phylogeny using protein sequences
106. The root of angiosperm phylogeny inferred from duplicate phytochrome genes
107. The morphology and relationships of the Monimiaceae
108. Palynological evidence on early differentiation of angiosperms
109. Fossil pollen records of extant angiosperms
110. Significance of fossil pollen for angiosperm history
111. The complete nucleotide sequence of the small-subunit ribosomal RNA coding region for the cycad Zamia pumila: Phylogenetic implications
112. A combined cladistic analysis of angiosperms using rbcL and nonmolecular data sets
113. Structural biology and phylogenetic estimation
114. A comparison of angiosperm phylogenies from nuclear 18S rRNA and rbcL sequences
115. High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants
116. A reevaluation of seed plant phylogeny
117. Gene organization deduced from the complete sequence of liverwort Marcbantia polyrnorpba mitochondrial DNA: A primitive form of plant mitochondrial genome
118. Multigene analyses identify the three earliest lineages of extant flowering plants
119. How good are deep phylogenetic trees?
120. Taxon sampling revisited
121. Phylogenetics of the Hamamelidae and their allies: Parsimony analyses of nucleotide sequences of the plastid gene rbcL
122. Molecular phylogenetics of the Magnoliidae: Cladistic analyses of nucleotide sequences of the plastid gene rbcL
123. Molecular divergence in the eastern Asia-eastern North America disjunct section Rytidospermum of Magnolia (Magnoliaceae)
124. The gain of three mitochondrial introns identifies liverworts as the earliest land plants
125. The earliest angiosperms: Evidence from mitochondrial, plastid and nuclear genomes
126. Phylogeny of early land plants: Insights from genes and genomes
127. A cycad-Ginkgo relationship among seed plants: Evidence from a chloroplast DNA structural rearrangement
128. The bases of angiosperm phylogeny: Cytology
129. Phylogenetic affinities of Monimiaceae based on cpDNA gene and spacer sequences
130. Circumscription and phylogeny of the Laurales: Evidence from molecular and morphological data
131. Phylogenetic position and floral function of Siparuna (Siparunaceae: Laurales)
132. Lignophyte phylogeny and the evolution of spermatophytes: A numerical cladistic analysis
133. Pollen morphology of the Amhorellaceae and Hortoniaceae (Hortonioideae: Monimiaceae)
134. Pollen morphology in the Trimeniaceae
135. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants
136. Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants
137. Phylogenetics of flowering plants based upon a combined analysis of plastid atpB and rbcL gene sequences
138. Angiosperm phylogeny inferred from 18S rDNA, rbcL and atpB sequences
139. Inferring complex phylogenies using parsimony: An empirical approach using three large DNA data sets for angiosperms
140. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences
141. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
142. Confidence in evolutionary trees from biological sequence data
143. In search of the first flower: A Jurassic angiosperm, Archaefructus, from northeast China
144. An Aptian plant with attached leaves and flowers: Implications for angiosperm origin
145. Phytogenetic evidence for the herbaceous origin of angiosperms
146. A phylogenetic classification of the Angiospermae
147. An updated phylogenetic classification of the flowering plants
148. Molecular phylogeny of the Gomortegaceae, a Chilean endemic monotypic and endangered family
149. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
150. Cuticle evolution in early Cretaceous angiosperms from the Potomac Group of Virginia and Maryland
151. The megaflora from the Quantico locality (Upper Albian), Lower Cretaceous Potomac Group of Virginia
152. A sequence encoding a maturase-related protein in a group II intron of a plant mitochondrial nad1 gene
153. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
154. Winteraceous pollen in the lower Cretaceous of Israel: Early evidence of a magnolialean angiosperm family
155. The bases of angiosperm phylogeny: Palynology
156. Ultrastructure of Lower Cretaceous angiosperm pollen and the origin and early evolution of flowering plants
157. MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants
158. The bases of angiosperm phylogeny: Paleobotany