Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 8, 2000, Pages 4092-4097

  Bowe, L Michelle ^a   Coat, Gwénaële ^b   DePamphilis, Claude W ^b  

^a FROSTBURG STATE UNIVERSITY   (United States)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME DNA;

ARTICLE; BOTANY; EVOLUTION; GENE SEQUENCE; GENOME; GYMNOSPERM; MITOCHONDRION; NONHUMAN; PHYLOGENY; PLASTID; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

GENOME, PLANT; GYMNOSPERMS; MOLECULAR SEQUENCE DATA; PHYLOGENY; TREES;

CONIFEROPHYTA; EMBRYOPHYTA; GNETALES; GNETOPHYTA; GYMNOSPERMAE; MAGNOLIOPHYTA; PINACEAE; SPERMATOPHYTA;

EID: 0034636023     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.8.4092     Document Type: Article

References (55)

1. Darwin, C. (1903) in More Letters of Charles Darwin: A Record of His Work in a Series of Hitherto Unpublished Letters, Vol. 2, eds. Darwin, F. & Seward, A. C. (John Murray, London).
2. Donoghue, M. J. (1994) Ann. Mo. Bot. Gard. 81, 405-418.
3. Doyle, J. A. (1978) Ann. Rev. Ecol. Syst. 9, 365-392.
4. Crane, P. R., Friis, E. M. & Pedersen, K. R. (1995) Nature (London) 374, 27-33.
5. Loconte, H. & Stevenson, D. W. (1990) Brittonia 42, 197-211.
6. Doyle, J. A. & Donoghue, M. J. (1986) Bot. Rev. 52, 321-431.
7. Rothwell, G. W. & Serbet, R. (1994) Syst. Bot. 19, 443-482.
8. Crane, P. R. (1985) Ann. Mo. Bot. Gard. 72, 716-793.
9. Doyle, J. A. & Donoghue, M. J. (1992) Brittonia 44, 89-106.
10. Doyle, J. A. (1996) Int. J. Plant Sci. 157, S3-S39.
11. Nixon, K. C., Crepet, W. L., Stevenson, D. & Friis, E. M. (1994) Ann. Mo. Bot. Gard. 81, 484-533.
12. Hickey, L. J. & Taylor, D. W. (1996) in Flowering Plant Origin, Evolution and Phllogeny, eds. Taylor, D. W. & Hickey, L. J. (Chapman & Hall, New York), pp. 176-231.
13. Doyle, J. A. (1998) Ann. Rev. Ecol. Syst. 29, 567-599.
14. Doyle, J. A. (1998) Mol. Phyl. Evol. 9, 448-462.
15. Friedman, W. E. (1992) Science 255, 336-339.
16. Friedman, W. E. (1992) Int. Rev. Cytology 140, 319-355.
17. Carmichael, J. S. & Friedman, W. E. (1996) Am. J. Bot. 83, 767-780.
18. Friedman, W. E. & Carmichael, J. S. (1998) Evolution 52, 1016-1030.
19. Frohlich, M. W. & Meyerowitz, E. M. (1997) Int. J. Plant Sci. 158, S131-142.
20. Winter, K.-U., Becker, A., Münster, T., Kim, J. T., Saedler, H. & Theissen, G. (1999) Proc. Natl. Acad. Sci. USA 96, 7342-7347.
21. Chase, M. W., Soltis, D. E., Olmstead, R. G., Morgan, D., Les, D. H., Mishler, D. B., Duvall, M. R., Price, R. A., Hills, H. G., Qiu, Y.-L., et al. (1993) Ann. Mo. Bot. Gard. 80, 528-580.
22. Stefanovic, S., Jager, M., Deutsch, J., Broutin, J. & Masselot, M. (1998) Am. J. Bot. 85, 688-697.
23. Hamby, R. K. & Zimmer, E. A. (1992) in Molecular Systematics of Plants, eds. Soltis, P. S., Soltis, D. E. & Doyle, J. J. (Chapman & Hall, New York), pp. 50-91.
24. Albert, V. A., Backlund, A., Bremer, K., M. W. Chase, Manhart, J. R., Mishler, B. D. & Nixon, K. C. (1994) Ann. Mo. Bot. Gard. 81, 534-568.
25. Goremykin, V., Bobrova, V., Pahnke, J., Troitsky, A., Antonov, A. & Martin, W. (1996) Mol. Biol. Evol. 13, 383-396.
26. Chaw, S.-M., Zharkikh, A., Sung, H.-M., Lau, T.-C. & Li, W.-H. (1997) Mol. Biol. Evol. 14, 56-68.
27. Wolfe, K. H., Li, W.-H. & Sharp, P. M. (1987) Proc. Natl Acad. Sci. USA 84, 9054-9058.
28. Malek, O., Lättig, K., Hiesel, R., Brennicke, A. & Knoop, V. (1996) EMBO J. 15, 1403-1411.
29. Davis, J. I., Simmons, M. P., Stevenson, D. W. & Wendel, J. F. (1998) Syst. Biol. 47, 282-310.
30. Bowe, L. M. (1997) Ph.D. thesis (Vanderbilt University, Nashville, TN).
31. Laroche, J., Li, P. & Bousquet, J. (1995) Mol. Biol. Evol. 12, 1151-1156.
32. Bowe, L. M. & dePamphilis, C. W. (1996) Mol. Biol. Evol. 13, 1159-1166.
33. Swofford, D. L. (1999) PAUP*: Phylogenetic Analysis Using Parsimony and Other Methods (Sinauer, Sunderland, MD).
34. Lyons-Weiler, J., Hoelzer, G. A. & Tausch, R. J. (1996) Mol. Biol. Evol. 13, 749-757.
35. Lyons-Weiler, J., Hoelzer, G. A. & Tausch, R. J. (1998) Biol. J. Linn. Soc. 64, 493-511.
36. Lyons-Weiler, J. & Hoelzer, G. A. (1997) Mol. Phyl. Evol. 8, 375-384.
37. Felsenstein, J. (1978) Syst. Zool. 27, 401-410.
38. Kishino, H. & Hasegawa, M. (1989) J. Mol. Evol. 29, 170-179.
39. Chaw, S.-M., Parkinson, C. L., Cheng, Y., Vincent, T. M. & Palmer, J. D. (2000) Proc. Natl. Acad. Sci. USA 97, 4086-4091.
40. Samgiullin, T. K., Martin, W. F., Troitsky, A. V. & Antonov, A. S. (1999) J. Mol. Evol. 49, 310-315.
41. Hansen, A., Hansmann, S., Samigullin, T., Antonov, A. & Martin, W. (1999) Mol. Biol. Evol. 16, 1006-1009.
42. Shutov, A. D., Braun, G., Chesnokov, Y. V., Horstmann, C., Kakhovskaya, I. A. & Bäumlein, H. J. Mol. Evol. 47, 486-492.
43. Qiu, Y.-L., Lee, J., Bernasconi-Quadroni, D. E., Soltis, P. S., Soltis, M., Zanis, E. A., Zimmer, Z., Chen, Z., Savolainen, V. & Chase, M. W. (1999) Nature (London) 402, 404-407.
44. Raubeson, L. A. & Jansen, R. K. (1992) Biochem. Syst. Ecol. 20, 17-24.
45. Mogensen, H. L. (1996) Am. J. Bot. 83, 383-404.
46. Bailey, I. W. (1944) Am. J. Bot. 31, 421-428.
47. Eames, A. J. (1952) Phytomorphology 2, 79-100.
48. Cronquist, A. (1960) Bot. Rev. 26, 425-482.
49. Bierhorst, D. W. (1971) Morphology of Vascular Plants. (Macmillan, New York).
50. Carlquist, S. (1996) Int. J. Plant Sci. 157, S58-S76.
51. Gifford, E. M. & Foster, A. S. (1989) Morphology and Evolution of Vascular Plants (Freeman, New York).
52. Stebbins, G. L. (1974) Flowering Plants: Evolution Above the Species Level (Harvard Univ. Press, Cambridge, MA).
53. Sun, G., Dilcher, D. L., Zheng, S. & Zhou, Z. (1998) Science 282, 1692-1695.
54. Soltis, P. S., Soltis, D. E. & Chase, M. W. (1999) Nature (London) 402, 402-404.
55. Mathews, S. & Donoghue, M. J. (1999) Science 286, 947-950.