Hybrid vigor: Hybrid methods in viral structure determination

Advances in Protein Chemistry

Volumn 64, Issue , 2003, Pages 37-91

  Gilbert, Robert J C ^a   Grimes, Jonathan M ^a   Stuart, David I ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; BACTERIOPHAGE; COMPLEX FORMATION; CRYOELECTRON MICROSCOPY; DIAGNOSTIC IMAGING; DYNAMICS; ELECTRON SPIN RESONANCE; HUMAN IMMUNODEFICIENCY VIRUS; HYBRID; HYBRIDIZATION; IMAGE RECONSTRUCTION; LIGHT SCATTERING; MASS SPECTROMETRY; MUTAGENESIS; NEUTRON FIBER DIFFRACTION; NEUTRON SCATTERING; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; REVIEW; STRUCTURE ANALYSIS; TRANSCRIPTION REGULATION; VIRUS ENVELOPE; VIRUS MORPHOLOGY; X RAY CRYSTALLOGRAPHY;

HUMAN IMMUNODEFICIENCY VIRUS;

EID: 0042827240     PISSN: 00653233     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0065-3233(03)01002-7     Document Type: Article

References (220)

1. Acharya, R., Fry, E., Stuart, D., Fox, G., Rowlands, D., and Brown, F. (1989). Nature 337, 709-716.
2. Amarasinghe, G. K., De Guzman, R. N., Turner, R. B., Chancellor, K. J., Wu, Z. R., and Summers, M. F. (2000). J. Mol. Biol. 301, 491-511.
3. Athappilly, F. K., Murali, R., Rux, J. J., Cai, Z., and Burnett, R. M. (1994). J. Mol. Biol. 242, 430-455.
4. Bamford, J.K., Cockburn, J., Diprose, J., Grimes, J.M., Sutton, G., Stuart, D.I., and Bamford, D.H. (2002) J. Struct. Biol. 2, 103-112.
5. Ban, N., Nissen, P., Hansen, J., Moore, P. B., and Steitz, T. A. (2000). Science 289, 905-920.
6. Baranowski, E., Ruiz-Jarabo, C. M., and Domingo, E. (2001). Science 292, 1102-1105.
7. Basak, A. K., Gouet, P., Grimes, J., Roy, P., and Stuart, D. (1996). J. Virol. 70, 3797-3806.
8. Basak, A. K., Grimes, J. M., Gouet, P., Roy, P., and Stuart, D. I. (1997). Structure 5, 871-883.
9. Belnap, D. M., and Steven, A. C. (2000). Trends Microbiol. 8, 91-93.
10. Belnap, D. M., Filman, D. J., Trus, B. L., Cheng, N., Booy, F. P., Conway, J. F., Curry, S., Hiremath, C. N., Tsang, S. K., Steven, A. C., and Hogle, J. M. (2000a). J. Virol. 74, 1342-1354.
11. Belnap, D. M., McDermott, B. M. Jr., Filman, D. J., Cheng, N., Trus, B. L., Zuccola, H. J., Racaniello, V. R., Hogle, J. M., and Steven, A. C. (2000b). Proc. Natl. Acad. Sci. USA 97, 73-78.
12. Benson, S. D., Bamford, J. K., Bamford, D. H., and Burnett, R. M. (1999). Cell 98, 825-833.
13. Bentley, G. A., Lewit-Bentley, A., Liljas, L., Skoglund, U., Roth, M., and Unge, T. (1987). J. Mol. Biol. 194, 129-141.
14. Berthet-Colominas, C., Monaco, S., Novelli, A., Sibai, G., Mallet, F., and Cusack, S. (1999). EMBO J. 18, 1124-1136.
15. Bewley, M. C., Springer, K., Zhang, Y. B., Freimuth, P., and Flanagan, J. M. (1999). Science 286, 1579-1583.
16. Bloomer, A. C., Champness, J. N., Bricogne, G., Staden, R., and Klug, A. (1978). Nature 276, 362-368.
17. Bonami, J. R., Aubert, H., Mari, J., Poulos, B. T., and Lightner, D. V. (1997). J. Struct. Biol. 120, 134-145.
18. Bonev, B. B., Gilbert, R. J., Andrew, P. W., Byron, O., and Watts, A. (2001). J. Biol. Chem. 276, 5714-5719.
19. Bothner, B., Schneemann, A., Marshall, D., Reddy, V., Johnson, J. E., and Siuzdak, G. (1999). Nat. Struct. Biol. 6, 114-116.
20. Bottcher, B., Wynne, S. A., and Crowther, R. A. (1997). Nature 386, 88-91.
21. Burnett, R. M. (1985). J. Mol. Biol. 185, 125-143.
22. Burns, N. R., Saibil, H. R., White, N. S., Pardon, J. F., Timmins, P. A., Richardson, S. M., Richards, B. M., Adams, S. E., Kingsman, S. M., and Kingsman, A. J. (1992). EMBO J. 11, 1155-1164.
23. Burroughs, J. N., O'Hara, R. S., Smale, C. J., Hamblin, C., Walton, A., Armstrong, R., and Mertens, P. P. (1994). J. Gen. Virol. 75, 1849-1857.
24. Butcher, S. J., Bamford, D. H., and Fuller, S. D. (1995). EMBO J. 14, 6078-6086.
25. Byron, O., and Gilbert, R. J. (2000). Curr. Opin. Biotechnol. 11, 72-80.
26. Caffrey, M., Cai, M., Kaufman, J., Stahl, S. J., Wingfield, P. T., Covell, D. G., Gronenborn, A. M., and Clore, G. M. (1998). EMBO J. 17, 4572-4584.
27. Caspar, D. L. D., and Klug, A. (1962). Cold Spring Harb. Symp. Quant. Biol. 27, 1-24.
28. Champness, J. N., Bloomer, A. C., Bricogne, G., Butler, P. G., and Klug, A. (1976). Nature 259, 20-24.
29. Chan, D. C., Fass, D., Berger, J. M., and Kim, P. S. (1997). Cell 89, 263-273.
30. Cheng, R. H., Kuhn, R. J., Olson, N. H., Rossmann, M. G., Choi, H. K., Smith, T. J., and Baker, T. S. (1995). Cell 80, 621-630.
31. Chipman, P. R., Agbandje McKenna, M., Kajigaya, S., Brown, K. E., Young, N. S., Baker, T. S., and Rossmann, M. G. (1996). Proc. Natl. Acad. Sci. USA 93, 7502-7506.
32. Chiu, C. Y., Mathias, P., Nemerow, G. R., and Stewart, P. L. (1999). J. Virol. 73, 6759-6768.
33. Choi, H. K., Lu, G., Lee, S., Wengler, G., and Rossmann, M. G. (1997). Proteins 27, 345-359.
34. Chuma, T., Le Blois, H., Sanchez-Vizcaino, J. M., Diaz-Laviada, M., and Roy, P. (1992). J. Gen. Virol. 73, 925-931.
35. Conway, J. F., Wikoff, W. R., Cheng, N., Duda, R. L., Hendrix, R. W., Johnson, J. E., and Steven, A. C. (2001). Science 292, 744-748.
36. Crick, F., and Watson, J. (1956). Nature 177, 473-475.
37. Cross, T. A., Opella, S. J., Stubbs, G., and Caspar, D. L. (1983). J. Mol. Biol. 170, 1037-1043.
38. Cullis, P. R., and de Kruijff, B. (1979). Biochim. Biophys. Acta 559, 399-420.
39. Cusack, S., Miller, A., Krijgsman, P. C., and Mellema, J. E. (1981). J. Mol. Biol. 145, 525-539.
40. Cusack, S., Oostergetel, G. T., Krijgsman, P. C., and Mellema, J. E. (1983). J. Mol. Biol. 171, 139-155.
41. Cusack, S., Ruigrok, R. W., Krygsman, P. C., and Mellema, J. E. (1985). J. Mol. Biol. 186, 565-582.
42. Devaux, C., Timmins, P. A., and Berthet-Colominas, C. (1983). J. Mol. Biol. 167, 119-132.
43. Diprose, J. M., Burroughs, J. N., Sutton, G. C., Goldsmith, A., Gouet, P., Malby, R., Overton, I., Zientara, S., Mertens, P. P., Stuart, D. I., and Grimes, J. M. (2001). EMBO J. 20, 7229-7239.
44. Dokland, T., McKenna, R., Sherman, D. M., Bowmn, B. R., Bean, W. F., and Rossmann, M. G. (1998). Acta Crystallogr. D Biol. Crystallogr. 54, 878-890.
45. Dryden, K. A., Farsetta, D. L., Wang, G., Keegan, J. M., Fields, B. N., Baker, T. S., and Nibert, M. L. (1998). Virology 245, 33-46.
46. Duda, R. L. (1998). Cell 94, 55-60.
47. Ferlenghi, I., Clarke, M., Ruttan, T., Allison, S. L., Schalich, J., Heinz, F. X., Harrison, S. C., Rey, F. A., and Fuller, S. D. (2001). Mol. Cell 7, 593-602.
48. Fry, E. E., Grimes, J., and Stuart, D. I. (1999a). Mol. Biotechnol. 12, 13-23.
49. Fry, E. E., Lea, S. M., Jackson, T., Newman, J. W., Ellard, F. M., Blakemore, W. E., Abu-Ghazaleh, R., Samuel, A., King, A. M., and Stuart, D. I. (1999b). EMBO J. 18, 543-554.
50. Fuerstenau, S. D., Benner, W. H., Thomas, J. J., Brugidou, C. Bothner, B., and Siuzdak, G. (2001). Angew. Chem. Int. Ed. Engl. 40, 541-544.
51. Fuller, S. D., Berriman, J. A., Butcher, S. J., and Gowen, B. E. (1995). Cell 81, 715-725.
52. Fuller, S. D., Butcher, S. J., Cheng, R. H., and Baker, T. S. (1996). J. Struct. Biol. 116, 48-55.
53. Gabashvili, I. S., Agrawal, R. K., Spahn, C. M., Grassucci, R. A., Svergun, D. I., Frank, J., and Penczek, P. (2000). Cell 100, 537-549.
54. Gamble, T. R., Vajdos, F. F., Yoo, S., Worthylake, D. K., Houseweart, M., Sundquist, W. I., and Hill, C. P. (1996). Cell 87, 1285-1294.
55. Gamble, T. R., Yoo, S., Vajdos, F. F., von Schwedler, U. K., Worthylake, D. K., Wang, H., McCutcheon, J. P., Sundquist, W. I., and Hill, C. P. (1997). Science 278, 849-853.
56. Ganser, B. K., Li, S., Klishko, V. Y., Finch, J. T., and Sundquist, W. I. (1999). Science 283, 80-83.
57. Gilbert, R. J., Jimenez, J. L., Chen, S., Tickle, I. J., Rossjohn, J., Parker, M., Andrew, P. W., and Saibil, H. R. (1999). Cell 97, 647-655.
58. Gitti, R. K., Lee, B. M., Walker, J., Summers, M. F., Yoo, S., and Sundquist, W. I. (1996). Science 273, 231-235.
59. Gouet, P., Diprose, J. M., Grimes, J. M., Malby, R., Burroughs, J. N., Zientara, S., Stuart, D. I., and Mertens, P. P. (1999). Cell 97, 481-490.
60. Grimes, J., Basak, A. K., Roy, P., and Stuart, D. (1995). Nature 373, 167-170.
61. Grimes, J. M., Jakana, J., Ghosh, M., Basak, A. K., Roy, P., Chiu, W., Stuart, D. I., and Prasad, B. V. (1997). Structure 5, 885-893.
62. Grimes, J. M., Burroughs, J. N., Gouet, P., Diprose, J. M., Malby, R., Zientara, S., Mertens, P. P., and Stuart, D. I. (1998). Nature 395, 470-478.
63. Guo, P., Zhang, C., Chen, C., Garver, K., and Trottier, M. (1998). Mol. Cell 2, 149-155.
64. de Guzman, R. N., Wu, Z. R., Stalling, C. C., Pappalardo, L., Borer, P. N., and Summers, M. F. (1998). Science 279, 384-388.
65. Hajdu, J. (2000). Curr. Opin. Struct. Biol. 10, 569-573.
66. Harvey, J. D., Bellamy, A. R., Earnshaw, W. C., and Schutt, C. (1981). Virology 112, 240-249.
67. He, Y., Bowman, V. D., Mueller, S., Bator, C. M., Bella, J., Peng, X., Baker, T. S., Wimmer, E., Kuhn, R. J., and Rossmann, M. G. (2000). Proc. Natl. Acad. Sci. USA 97, 79-84.
68. Henderson, R. (2002). Nature 415, 833.
69. Hewat, E. A., and Blaas, D. (1996). EMBO J. 15, 1515-1523.
70. Hewat, E. A., Booth, T. F., Loudon, P. T., and Roy, P. (1992). Virology 189, 10-20.
71. Hewat, E. A., Verdaguer, N., Fita, I., Blakemore, W., Brookes, S., King, A., Newman, J., Domingo, E., Mateu, M. G., and Stuart, D. I. (1997). EMBO J. 16, 1492-1500.
72. Hewat, E. A., Neumann, E., Conway, J. F., Moser, R., Ronacher, B., Marlovits, T. C., and Blaas, D. (2000). EMBO J. 19, 6317-6325.
73. Hill, C. L., Booth, T. F., Prasad, B. V., Grimes, J. M., Mertens, P. P., Sutton, G. C., and Stuart, D. I. (1999). Nat. Struct. Biol. 6, 565-568.
74. Hill, C. P., Worthylake, D., Bancroft, D. P., Christensen, A. M., and Sundquist, W. I. (1996). Proc. Natl. Acad. Sci. USA 93, 3099-3104.
75. Jack, A., Harrison, S. C., and Crowther, R. A. (1975). J. Mol. Biol. 97, 163-172.
76. Jackson, T., Sheppard, D., Denyer, M., Blakemore, W., and King, A. M. (2000). J. Virol. 74, 4949-4956.
77. Jacrot, B., Chauvin, C., and Witz, J. (1977). Nature 266, 417-421.
78. Johnson, J. E. (1999). Principles of virus structure. In "Encyclopaedia of Virology" (A. Granoff and R. G. Webster, Eds.), 2nd Ed., pp. 1946-1956. Academic Press, London.
79. Kan, J. H., Cremers, A. F., Haasnoot, C. A., and Hilbers, C. W. (1987). Eur. J. Biochem. 168, 635-639.
80. Kanamaru, S., Leiman, P. G., Kostyuchenko, V. A., Chipman, P. R., Mesyanzhinov, V. V., Arisaka, F., and Rossmann, M. G. (2002). Nature 415, 553-557.
81. Kliger, Y., Peisajovich, S. G., Blumenthal, R., and Shai, Y. (2000). J. Mol. Biol. 301, 905-914.
82. Klug, A. (1999). Philos. Trans. R. Soc. Biol. Sci. 354, 531-535.
83. Kolatkar, P. R., Bella, J., Olson, N. H., Bator, C. M., Baker, T. S., and Rossmann, M. G. (1999). EMBO J. 18, 6249-6259.
84. Kostyuchenko, V. A., Navruzbekov, G. A., Kurochkina, L. P., Strelkov, S. V., Mesyanzhinov, V. V., and Rossmann, M. G. (1999). Structure 7, 1213-1222.
85. Kruse, J., Kruse, K. M., Witz, J., Chauvin, C., Jacrot, B., and Tardieu, A. (1982). J. Mol. Biol. 162, 393-414.
86. Kuznetsov, Yu, G., Malkin, A. J., Land, T. A., DeYoreo, J. J., Barba, A. P., Konnert, J., and McPherson, A. (1997). Biophys. J. 72, 2357-2364.
87. Kuznetsov, Y. G., Larson, S. B., Day, J., Greenwood, A., and McPherson, A. (2001). Virology 284, 223-234.
88. Kwong, P. D., Wyatt, R., Robinson, J., Sweet, R. W., Sodroski, J., and Hendrickson, W. A. (1998). Nature 393, 648-659.
89. Kwong, P. D., Wyatt, R., Sattentau, Q. J., Sodroski, J., and Hendrickson, W. A. (2000). J. Virol. 74, 1961-1972.
90. Landsberger, F. R., Lenard, J., Paxton, J., and Compans, R. W. (1971). Proc. Natl. Acad. Sci. USA 68, 2579-2583.
91. Landsberger, F. R., Compans, R. W., Paxton, J., and Lenard, J. (1972). J. Supramol. Struct. 1, 50-54.
92. Lata, R., Conway, J. F., Cheng, N., Duda, R. L., Hendrix, R. W., Wikoff, W. R., Johnson, J. E., Tsuruta, H., and Steven, A. C. (2000). Cell 100, 253-263.
93. Leiman, P. G., Kostyuchenko, V. A., Shneider, M. M., Kurochkina, L. P., Mesyanzhinov, V. V., and Rossmann, M. G. (2000). J. Mol. Biol. 301, 975-985.
94. Lepault, J., Petirpas, I., Erk, I., Navaza, J., Bigot, D., Dona, M., Vachette, P., Cohen, J., and Rey, F. A. (2001). EMBO J. 20, 1498-1507.
95. Lescar, J., Rossel, A., Wien, M. W., Navaza, J., Fuller, S. D., Wengler, G., Wengler, G., and Rey, R. A. (2001). Cell 105, 137-148.
96. Leslie, A. G. W. (1992). "Joint CCP4+ESFEAMCB Newsletter on Protein Crystallography, " 26, http://www.mrc-lmb.cam.ac.uk/harry/mosflm/mosflm_user_guide.html.
97. Li, S., Hill, C. P., Sundquist, W. I., and Finch, J. T. (2000). Nature 407, 409-413.
98. Liddington, R. C., Yan, Y., Moulai, J., Sahli, R., Benjamin, T. L., and Harrison, S. C. (1991). Nature 354, 278-284.
99. Liu, D. J., and Day, L. A. (1994). Science 265, 671-674.
100. Logan, D., Abu-Ghazaleh, R., Blakemore, W., Curry, S., Jackson, T., King, A., Lea, S., Lewis, R., Newman, J., and Parry, N., et al. (1993). Nature 362, 566-568.
101. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997). Nature 389, 251-260.
102. Lyles, D. S., and Landsberger, F. R. (1977). Proc. Natl. Acad. Sci. USA 74, 1918-1922.
103. Malkin, A. J., Kuznetsov, Y. G., Lucas, R. W., and McPherson, A. (1999). J. Struct. Biol. 127, 35-43.
104. Mancini, E. J., and Fuller, S. D. (2000). Acta Crystallogr. D Biol. 56, 1278-1287.
105. Mancini, E. J., Clarke, M., Gowen, B. E., Rutten, T., and Fuller, S. D. (2000). Mol. Cell 5, 255-266.
106. Martin, C. S., Burnett, R. M., de Haas, F., Heinkel, R., Rutten, T., Fuller, S. D., Butcher, S. J., and Bamford, D. H. (2001). Structure 9, 917-930.
107. Mat-Arip, Y., Garver, K., Chen, C., Sheng, S., Shao, Z., and Guo, P. (2001). J. Biol. Chem. 276, 32575-32584.
108. Mathieu, M., Petitpas, I., Navaza, J., Lepault, J., Kohli, E., Pothier, P., Prasad, B. V. V., Cohen, J., and Rey, F. A. (2001). EMBO J. 20, 1485-1497.
109. Mayer, A. (1999). Curr. Opin. Cell. Biol. 11, 447-452.
110. McKenna, R., Xia, D., Willingmann, P., Ilag, L. L., and Rossmann, M. G. (1992). Acta Crystallogr. B 48, 499-511.
111. McPherson, A., Malkin, A. J., Kuznetsov, Y. G., and Plomp, M. (2001). Acta Crystallogr. D Biol. Crystallogr. 57, 1053-1060.
112. Meining, W., Bacher, A., Bachmann, L., Schmid, C., Weinkauf, S., Huber, R., and Nar, H. (1995). J. Mol. Biol. 253, 208-218.
113. Mely, Y., Jullian, N., Morellet, N., De Rocquigny, H., Dong, C. Z., Piemont, E., Roques, B. P., and Gerard, D. (1994). Biochemistry 33, 12085-12091.
114. Miao, J., Kirz, J., and Sayre, D. (2000). Acta Crystallogr. D Biol. Crystallogr. 56, 1312-1315.
115. Miao, J., Hodgson, K. O., and Sayre, D. (2001). Proc. Natl. Acad. Sci. USA 98, 6641-6645.
116. Momany, C., Kovari, L. C., Prongay, A. J., Keller, W., Gitti, R. K., Lee, B. M., Gorbalenya, A. E., Tong, L., McClure, J., Ehrlich, L. S., Summers, M. F., Carter, C., and Rossmann, M. G. (1996). Nat. Struct. Biol. 3, 763-770.
117. Morais, M. C., Tao, Y., Olson, N. H., Grimes, S., Jardine, P. J., Anderson, D. L., Baker, T. S., and Rossmann, M. G. (2001). J. Struct. Biol. 135, 38-46.
118. Morellet, N., Jullian, N., De Rocquigny, H., Maigret, B., Darlix, J. L., and Roques, B. P. (1992). EMBO J. 11, 3059-3065.
119. Munowitz, M. G., Dobson, C. M., Griffin, R. G., and Harrison, S. C. (1980). J. Mol. Biol. 141, 327-333.
120. Namba, K., Pattanayek, R., and Stubbs, G. (1989). J. Mol. Biol. 208, 307-325.
121. Nermut, M. V., Hockley, D. J., Bron, P., Thomas, D., Zhang, W. H., and Jones, I. M. (1998). J. Struct. Biol. 123, 143-149.
122. Olland, A. M., Jane-Valbuena, J., Schiff, L. A., Nibert, M. L., and Harrison, S. C. (2001). EMBO J. 20, 979-989.
123. Olson, A. J., Bricogne, G., and Harrison, S. C. (1983). J. Mol. Biol. 171, 61-93.
124. Olson, N. H., Kolatkar, P. R., Oliveira, M. A., Cheng, R. H., Greve, J. M., McClelland, A., Baker, T. S., and Rossmann, M. G. (1993). Proc. Natl. Acad. Sci. USA 90, 507-511.
125. Olson, N. H., Gingery, M., Eiserling, F. A., and Baker, T. S. (2001). Virology 279, 385-391.
126. Oostergetel, G. T., Mellema, J. E., and Cusack, S. (1983). J. Mol. Biol. 171, 157-173.
127. Orlova, E. V., Dube, P., Harris, J. R., Beckman, E., Zemlin, F., Markl, J., and van Heel, M. (1997). J. Mol. Biol. 271, 417-437.
128. Orlova, E. V., Rahman, M. A., Gowen, B., Volynski, K. E., Ashton, A. C., Manser, C., van Heel, M., and Ushkaryoy, Y. A. (2000). Nat. Struct. Biol. 7, 48-53.
129. Otwinowski, Z., and Minor, W. (1997). Methods Enzymol. 276, 307-326.
130. Parry, N., Fox, G., Rowlands, D., Brown, F., Fry, E., Acharya, R., Logan, D., and Stuart, D. (1990). Nature 347, 569-572.
131. Pattanayek, R., and Stubbs, G. (1992). J. Mol. Biol. 228, 516-528.
132. Pauptit, R. A., Dennis, C. A., Derbyshire, D. J., Breeze, A. L., Weston, S. A., Rowsell, S., and Murshudov, G. N. (2001). Acta Crystallogr. D Biol. Crystallogr. 57, 1397-1404.
133. Payne, C. C., and Mertens, P. P. C. (1983). Cytoplasmic polyhedrosis viruses. In "The Reoviridae" (W. F. Joklik, Ed.), pp. 425-504. Plenum Press, New York.
134. Pederson, D. M., Welsh, L. C., Marvin, D. A., Sampson, M., Perham, R. N., Yu, M., and Slater, M. R. (2001). J. Mol. Biol. 309, 401-421.
135. Pletnev, S. V., Zhang, W., Mukhopadyay, S., Fisher, B. R., Hernandez, R., Brown, D. T., Baker, T. S., Rossmann, M. G., and Kuhn, R. J. (2001). Cell 105, 127-136.
136. Prasad, B. V., Hardy, M. E., Dokland, T., Bella, J., Rossmann, M. G., and Estes, M. K. (1999). Science 286, 287-290.
137. Qanungo, K. R., Kundu, S. C., and Ghosh, A. K. (2000). Acta Virol. 44, 349-357.
138. Rao, Z., Belyaey, A. S., Fry, E., Roy, P., Jones, I. M., and Stuart, D. I. (1995). Nature 378, 743-747.
139. Ravantti, J. J., and Bamford, D. H. (1999). J. Struct. Biol. 125, 216-222.
140. Reinisch, K. M., Nibert, M. L., and Harrison, S. C. (2000). Nature 404, 960-967.
141. Roberts, M. M., White, J. L., Grutter, M. G., and Burnett, R. M. (1986), Science 232, 1148-1151.
142. Robinson, I. K., and Harrison, S. C. (1982). Nature 297, 563-568.
143. Rossmann, M. G. (1999). J. Synchrotron Radiat. 6, 816-821.
144. Rossmann, M. G. (2000). Acta Crystallogr. D Biol. Crystallogr. 56, 1341-1349.
145. Rossmann, M. G. Arnold, E. Erickson, J. W. Frankenberger, E. A. Griffith, J. P. Hecht, H. J. Johnson, J. E. Kamer, G. Luo, M. Mosser, A. G., et al. (1985). Nature 317, 145-153.
146. Rydman, P. S., Caldentey, J., Butcher, S. J., Fuller, S. D., Rutten, T., and Bamford, D. H. (1999). J. Mol. Biol. 291, 575-587.
147. Saad, A., Ludtke, S. J., Jakana, J., Rixon, F. J., Tsuruta, H., and Chiu, W. (2001). J. Struct. Biol. 133, 32-42.
148. San Martin, C., Huiskonen, J. T., Bamford, J. K., Butcher, S. J., Fuller, S. D., Bamford, D. H., and Burnett, R. M. (2002). Nat. Struct. Biol. 10, 756-763.
149. Sato, M., Sato Miyamoto, Y., Kameyama, K., Ishikawa, N., Imai, M., Ito, Y., and Takagi, T. (1995). J. Biochem. (Tokyo) 118, 1297-1302.
150. Satoh, O., Imai, H., Yoneyama, T., Miyamura, T., Utsumi, H., Inoue, K., and Umeda, M. (2000). J. Biochem. (Tokyo) 127, 543-550.
151. Schmid, M. F., Sherman, M. B., Matsudaira, P., Tsuruta, H., and Chiu, W. (1999). J. Struct. Biol. 128, 51-57.
152. Schoehn, G., Hayes, M., Cliff, M., Clarke, A. R., and Saibil, H. R. (2000). J. Mol. Biol. 301, 323-332.
153. Simpson, A. A., Tao, Y., Leiman, P. G., Badasso, M. O., He, Y., Jardine, P. J., Olson, N. H., Morais, M. C., Grimes, S., Anderson, D. L., Baker, T. S., and Rossmann, M. G. (2000). Nature 408, 745-750.
154. Siuzdak, G. (1998). J. Mass. Spectrom. 33, 203-211.
155. Siuzdak, G., Bothner, B., Yeager, M., Brugidou, C., Fauquet, C. M., Hoey, K., and Chang, C. M. (1996). Chem. Biol. 3, 45-48.
156. Smith, D. E., Tans, S. J., Smith, S. B., Grimes, S., Anderson, D. L., and Bustamante, C. (2001). Nature 413, 748-752.
157. Smith, T. J., Olson, N. H., Cheng, R. H., Chase, E. S., and Baker, T. S. (1993a). Proc. Natl. Acad. Sci. USA 90, 7015-7018.
158. Smith, T. J., Olson, N. H., Cheng, R. H., Liu, H., Chase, E. S., Lee, W. M., Leippe, D. M., Mosser, A. G., Rueckert, R. R., and Baker, T. S. (1993b). J. Virol. 67, 1148-1158.
159. Smith, T. J., Chase, E. S., Schmidt, T. J., Olson, N. H., and Baker, T. S. (1996). Nature 383, 350-354.
160. Spahn, C. M., Penczek, P. A., Leith, A., and Frank, J. (2000). Structure 15, 937-948.
161. Spahn, C. M., Beckmann, R., Eswar, N., Penczek, P. A., Sali, A., Blobel, G., and Frank, J. (2001). Cell 107, 373-386.
162. Speir, J. A., Munshi, S., Wang, G., Baker, T. S., and Johnson, J. E. (1995). Structure 3, 63-78.
163. Stark, H., Rodnina, M. V., Wieden, H. J., van Heel, M., and Wintermeyer, W. (2000), Cell 100, 301-309.
164. Stewart, P. L., Burnett, R. M., Cyrklaff, M., and Fuller, S. D. (1991). Cell 67, 145-154.
165. Stewart, P. L., Fuller, S. D., and Burnett, R. M. (1993). EMBO J. 12, 2589-2599.
166. Strelkov, S. V., Tao, Y., Rossmann, M. G., Kurochkina, L. P., Shneider, M. M., and Mesyanzhinov, V. V. (1996). Virology 219, 190-194.
167. Strelkov, S. V., Tao, Y., Shneider, M. M., Mesyanzhinov, V. V., and Rossmann, M. G. (1998). Acta Crystallogr. D Biol. Crystallogr. 54, 805-816.
168. Stubbs, G. (1999). Philos. Trans. R. Soc. B Biol. Sci. 354, 551-557.
169. Stubbs, G., Warren, S., and Holmes, K. (1977). Nature 267, 216-212.
170. Suck, D., Rayment, I., Johnson, J. E., and Rossmann, M. G. (1978). Virology 85, 187-197.
171. Summers, M. F. Henderson, L. E. Chance, M. R. Bess, J. W., Jr. South, T. L. Blake, P. R. Sagi, I. Perez Alvarado, G. Sowder, R. C., III Hare, D. R., et al. (1992). Protein Sci. 1, 563-574.
172. Tan, K., Liu, J., Wang, J., Shen, S., and Lu, M. (1997). Proc. Natl. Acad. Sci. USA 94, 12303-12308.
173. Tang, L., Johnson, K. N., Bal, L. A., Lin, T., Yeager, M., and Johnson, J. E. (2001). Nat. Struct. Biol. 8, 77-83.
174. Tao, Y., Strelkoy, S. V., Mesyanzhinov, V. V., and Rossmann, M. G. (1997). Structure 5, 789-798.
175. Tao, Y., Olson, N. H., Xu, W., Anderson, D. L., Rossmann, M. G., and Baker, T. S. (1998). Cell 95, 431-437.
176. Thouvenin, E., and Hewat, E. (2000). Acta Crystallogr. D Biol. Crystallogr. 56, 1350-1357.
177. Thouvenin, E., Laurent, S., Madelaine, M. F., Rasschaert, D., Vautherot, J. F., and Hewat, E. A. (1997). J. Mol. Biol. 270, 238-246.
178. Thouvenin, E., Schoehn, G., Rey, F., Petitpas, I., Mathieu, M., Vaney, M. C., Cohen, J., Kohli, E., Pothier, P., and Hewat, E. (2001). J. Mol. Biol. 307, 161-172.
179. Timmins, P. A., Wild, D., and Witz, J. (1994). Structure 2, 1191-1201.
180. Tito, M. A., Tars, K., Valegard, K., Hajdu, J., and Robinson, C. V. (2000). J. Am. Chem. Soc. 122, 3550-3551.
181. Tomita, M., Hasegawa, T., Tsukihara, T., Miyajima, S., Nagao, M., and Sato, M. (1999). J. Biochem. (Tokyo) 125, 916-922.
182. Tuma, R., Bamford, J. H., Bamford, D. H., Russell, M. P., and Thomas, G. J., Jr. (1996a). J. Mol. Biol. 257, 87-101.
183. Tuma, R., Bamford, J. H., Bamford, D. H., and Thomas, G. J. Jr. (1996b). J. Mol. Biol. 257, 102-115.
184. Tuma, R., Coward, L. U., Kirk, M. C., Barnes, S., and Prevelige, P. E., Jr. (2001). J. Mol. Biol. 306, 389-396.
185. Turner, B. G., and Summers, M. F. (1999). J. Mol. Biol. 285, 1-32.
186. Valpuesta, J. M., Fernandez, J. J., Carazo, J. M., and Carrascosa, J. L. (1999). Structure 7, 289-296.
187. van Heel, M., Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M., and Patwardan, A. (2000). Q. Rev. Biophys. 33, 307-369.
188. van Raaij, M. J., Mitraki, A., Lavigne, G., and Cusack, S. (1999). Nature 401, 935-938.
189. Venien-Bryan, C., and Fuller, S. D. (1994). J. Mol. Biol. 236, 572-583.
190. Verdaguer, N., Schoehn, G., Ochoa, W. F., Fita, I., Brookes, S., King, A., Domingo, E., Mateu, M. G., Stuart, D., and Hewat, E. A. (1999). Virology 255, 260-268.
191. Wang, H., and Stubbs, G. (1994). J. Mol. Biol. 239, 371-384.
192. Wang, H., Culver, J. N., and Stubbs, G. (1997). J. Mol. Biol. 269, 769-779.
193. Wang, L., Lane, L. C., and Smith, D. L. (2001). Protein Sci. 10, 1234-1243.
194. Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J., and Wiley, D. C. (1997). Nature 387, 426-430.
195. Welker, R., Hohenberg, H., Tessmer, U., Huckhagel, C., and Krausslich, H. G. (2000). J. Virol. 74, 1168-1177.
196. Welsh, L. C., Marvin, D. A., and Perham, R. N. (1998a). J. Mol. Biol. 284, 1265-1271.
197. Welsh, L. C., Symmons, M. F., Sturtevant, J. M., Marvin, D. A., and Perham, R. N. (1998b). J. Mol. Biol. 283, 155-177.
198. Welsh, L. C., Symmons, M. F., and Marvin, D. A. (2000). Acta Crystallogr. D Biol. Crystallogr, 56, 137-150.
199. Wikoff, W. R., Liljas, L., Duda, R. L., Tsuruta, H., Hendrix, R. W., and Johnson, J. E. (2000). Science 289, 2129-2133.
200. Wilk, T., and Fuller, S. D. (1999). Curr. Opin. Struct. Biol. 9, 231-243.
201. Wilk, T., Gowen, B., and Fuller, S. D. (1999). J. Virol. 73, 1931-1940.
202. Wilk, T., Gross, I., Gowen, B. E., Rutten, T., de Haas, F., Welker, R., Krausslich, H. G., Boulanger, P., and Fuller, S. D. (2001). J. Virol. 75, 759-771.
203. Wimberly, B. T., Brodersen, D. E., Clemons, W. M., Jr., Morgan Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T., and Ramakrishnan, V. (2000). Nature 407, 327-339.
204. Winkler, F. K., Schutt, C. E., Harrison, S. C., and Bricogne, G. (1977). Nature 265, 509-513.
205. Witz, J., Timmins, P. A., and Adrian, M. (1993). Proteins 17, 223-231.
206. Woo, S. D., Kim, W. J., Kim, H. S., Jin, B. R., Lee, Y. H., and Kang, S. K. (1998). Arch. Virol. 143, 1209-1214.
207. Wyatt, R., Kwong, P. D., Desjardins, E., Sweet, R. W., Robinson, J., Hendrickson, W. A., and Sodroski, J. G. (1998). Nature 393, 705-711.
208. Wynne, S. A., Crowther, R. A., and Leslie, A. G. (1999). Mol. Cell 3, 771-780.
209. Xiao, C., Bator, C. M., Bowman, V. D., Rieder, E., He, Y., Hebert, B., Bella, J., Baker, T. S., Wimmer, E., Kuhn, R. J., and Rossmann, M. G. (2001). J. Virol. 75, 2444-2451.
210. Yan, X., Olson, N. H., Van Etten, J. L., Bergoin, M., Rossmann, M. G., and Baker, T. S. (2000). Nat. Struct. Biol. 7, 101-103.
211. Yeager, M., Berriman, J. A., Baker, T. S., and Bellamy, A. R. (1994). EMBO J. 13, 1011-1018.
212. Yeagle, P. L. (1990). Biol. Magn. Res. 9, 1-50.
213. Zhang, F., Lemieux, S., Wu, X., St Arnaud, D., McMurray, C. T., Major, F., and Anderson, D. (1998). Mol. Cell 2, 141-147.
214. Zhang, H., Zhang, J., Yu, X., Lu, X., Zhang, Q., Jakana, J., Chen, D. H., Zhang, X., and Zhou, Z. H. (1999). J. Virol. 73, 1624-1629.
215. Zhang, W., Olson, N. H., Baker, T. S., Faulkner, L., Agbandje-McKenna, M., Boulton, M. I., Davies, J. W., and McKenna, R. (2001). Virology 279, 471-477.
216. Zhao, W., Ji, W. G., and Rowlands, J. A. (2001). Med. Phys. 28, 2039-2049.
217. Zhou, Z. H., Dougherty, M., Jakana, J., He, J., Rixon, F. J., and Chiu, W. (2000). Science 288, 877-880.
218. Zhou, Z. H., Baker, M. L., Jiang, W., Dougherty, M., Jakana, J., Dong, G., Lu, G., and Chiu, W. (2001). Nat. Struct. Biol. 8, 868-873.
219. Zlotnick, A., Johnson, J. M., Wingfield, P. W., Stahl, S. J., and Endres, D. (1999). Biochemistry 38, 14644-14652.
220. Zlotnick, A., Aldrich, R., Johnson, J. M., Ceres, P., and Young, M. J. (2000), Virology 277, 450-456.