-
1
-
-
0032925064
-
Biochemical characterization of the Pseudomonas aeruginosa 101/1477 metallo-β-lactamase IMP-1 produced by Escherichia coli
-
Laraki, N., Franceschini, N., Rossolini, G. M., Santucci, P., Meunier, C., de Pauw, E., Amicosante, G., Frere, J. M., and Galleni, M. (1999) Biochemical characterization of the Pseudomonas aeruginosa 101/1477 metallo-β-lactamase IMP-1 produced by Escherichia coli, Antimicrob. Agents Chemother. 43, 902-906.
-
(1999)
Antimicrob. Agents Chemother.
, vol.43
, pp. 902-906
-
-
Laraki, N.1
Franceschini, N.2
Rossolini, G.M.3
Santucci, P.4
Meunier, C.5
De Pauw, E.6
Amicosante, G.7
Frere, J.M.8
Galleni, M.9
-
2
-
-
0034009414
-
Characterization of the metallo-β-lactamase determinant of Acinetobacter baumannii AC-54/97 reveals the existence of bla(IMP) allelic variants carried by gene cassettes of different phylogeny
-
Riccio, M. L., Franceschini, N., Boschi, L., Caravelli, B., Cornaglia, G., Fontana, R., Amicosante, G., and Rossolini, G. M. (2000) Characterization of the metallo-β-lactamase determinant of Acinetobacter baumannii AC-54/97 reveals the existence of bla(IMP) allelic variants carried by gene cassettes of different phylogeny, Antimicrob. Agents Chemother. 44, 1229-1235.
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 1229-1235
-
-
Riccio, M.L.1
Franceschini, N.2
Boschi, L.3
Caravelli, B.4
Cornaglia, G.5
Fontana, R.6
Amicosante, G.7
Rossolini, G.M.8
-
3
-
-
0035170847
-
Occurrence of a new metallo-β-lactamase IMP-4 carried on a conjugative plasmid in Citrobacter youngae from the People's Republic of China
-
Hawkey, P. M., Xiong, J., Ye, H., Li, H., and M'Zali, F. H. (2001) Occurrence of a new metallo-β-lactamase IMP-4 carried on a conjugative plasmid in Citrobacter youngae from the People's Republic of China, FEMS Microbiol. Lett. 194, 53-57.
-
(2001)
FEMS Microbiol. Lett.
, vol.194
, pp. 53-57
-
-
Hawkey, P.M.1
Xiong, J.2
Ye, H.3
Li, H.4
M'Zali, F.H.5
-
5
-
-
0033520073
-
On the mechanism of the metallo-β-lactamase from Bacteroides fragilis
-
Wang, Z., Fast, W., and Benkovic, S. J. (1999) On the mechanism of the metallo-β-lactamase from Bacteroides fragilis, Biochemistry 38, 10013-10023.
-
(1999)
Biochemistry
, vol.38
, pp. 10013-10023
-
-
Wang, Z.1
Fast, W.2
Benkovic, S.J.3
-
6
-
-
0034829463
-
Molecular dynamics simulations of the mononuclear zinc-β-lactamase from Bacillus cereus
-
Suárez, D., and Merz, K. (2001) Molecular Dynamics Simulations of the Mononuclear Zinc-β-lactamase from Bacillus cereus, J. Am. Chem. Soc. 123, 3759-3770.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 3759-3770
-
-
Suárez, D.1
Merz, K.2
-
7
-
-
0035852621
-
A 1.2-Å snapshot of the final step of bacterial cell wall biosynthesis
-
Lee, W., McDonough, M. A., Kotra, L., Li, Z. H., Silvaggi, N, R., Takeda, Y., Kelly, J. A., and Mobashery, S. (2001) A 1.2-Å snapshot of the final step of bacterial cell wall biosynthesis, Proc. Natl. Acad. Sci. U.S.A. 98, 1427-1431.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 1427-1431
-
-
Lee, W.1
McDonough, M.A.2
Kotra, L.3
Li, Z.H.4
Silvaggi, N.R.5
Takeda, Y.6
Kelly, J.A.7
Mobashery, S.8
-
8
-
-
0036480755
-
The bacterial cell wall as a source of antibacterial targets
-
Green, D. W. (2002) The bacterial cell wall as a source of antibacterial targets, Expert Opin. Ther. Targets 6, 1-19.
-
(2002)
Expert Opin. Ther. Targets
, vol.6
, pp. 1-19
-
-
Green, D.W.1
-
9
-
-
0003693926
-
-
Spektrum Akademischer Verlag, Heidelberg, Germany
-
Graefe, U. (1992) Biochemie der Antibiotika, Struktur, Biosynthese, Wirkungsmechanismus, Spektrum Akademischer Verlag, Heidelberg, Germany.
-
(1992)
Biochemie der Antibiotika, Struktur, Biosynthese, Wirkungsmechanismus
-
-
Graefe, U.1
-
10
-
-
0031670104
-
β-lactamases: Protein evolution in real time
-
Petrosino, J., Cantu, C., III, and Palzkill, T. (1998) β-Lactamases: protein evolution in real time, Trends Microbiol. 6, 323-327.
-
(1998)
Trends Microbiol.
, vol.6
, pp. 323-327
-
-
Petrosino, J.1
Cantu C. III2
Palzkill, T.3
-
11
-
-
0032032930
-
Catalytic properties of class A β-lactamases: Efficiency and diversity
-
Matagne, A., Lamotte-Brasseur, J., and Frere, J. M. (1998) Catalytic properties of class A β-lactamases: efficiency and diversity, Biochem. J. 330, 581-598.
-
(1998)
Biochem. J.
, vol.330
, pp. 581-598
-
-
Matagne, A.1
Lamotte-Brasseur, J.2
Frere, J.M.3
-
12
-
-
0013865825
-
Zinc as a cofactor for cephalosporinase from Bacillus cereus 569
-
Sabath, L. D., and Abraham, E. P. (1966) Zinc as a cofactor for cephalosporinase from Bacillus cereus 569, Biochem. J. 98, 11C-13C.
-
(1966)
Biochem. J.
, vol.98
-
-
Sabath, L.D.1
Abraham, E.P.2
-
13
-
-
0027284501
-
Metallo-β-lactamases: A new therapeutic challenge
-
Payne, D. J. (1993) Metallo-β-lactamases: a new therapeutic challenge, J. Med. Microbiol. 39, 93-99.
-
(1993)
J. Med. Microbiol.
, vol.39
, pp. 93-99
-
-
Payne, D.J.1
-
14
-
-
0028810769
-
The 3-D structure of a zinc metallo-βlactamase from Bacillus cereus reveals a new type of protein fold
-
Carfi, A., Pares, S., Duee, E., Galleni, M., Duez, C., Frere, J. M., and Dideberg, O. (1995) The 3-D structure of a zinc metallo-βlactamase from Bacillus cereus reveals a new type of protein fold, EMBO J. 14, 4914-4921.
-
(1995)
EMBO J.
, vol.14
, pp. 4914-4921
-
-
Carfi, A.1
Pares, S.2
Duee, E.3
Galleni, M.4
Duez, C.5
Frere, J.M.6
Dideberg, O.7
-
15
-
-
0033302071
-
An evolutionary classification of the metalloβ-lactamase fold proteins
-
Aravind, L. (1999) An evolutionary classification of the metalloβ-lactamase fold proteins, In Silico Biol. 1, 69-91.
-
(1999)
In Silico Biol.
, vol.1
, pp. 69-91
-
-
Aravind, L.1
-
16
-
-
0030586055
-
Crystal structure of the wide-spectrum binuclear zinc β-lactamase from Bacteroides fragilis
-
Concha, N. O., Rasmussen, B. A., Bush, K., and Herzberg, O. (1996) Crystal structure of the wide-spectrum binuclear zinc β-lactamase from Bacteroides fragilis, Structure 4, 823-836.
-
(1996)
Structure
, vol.4
, pp. 823-836
-
-
Concha, N.O.1
Rasmussen, B.A.2
Bush, K.3
Herzberg, O.4
-
17
-
-
0032553559
-
The crystal structure of the L1 metallo-β-lactamase from Stenotrophomonas maltophilia at 1.7 Å resolution
-
Ullah, J. H., Walsh, T. R., Taylor, I. A., Emery, D. C., Venna, C. S., Gamblin, S. J., and Spencer, J. (1998) The crystal structure of the L1 metallo-β-lactamase from Stenotrophomonas maltophilia at 1.7 Å resolution, J. Mol. Biol. 284, 125-136.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 125-136
-
-
Ullah, J.H.1
Walsh, T.R.2
Taylor, I.A.3
Emery, D.C.4
Venna, C.S.5
Gamblin, S.J.6
Spencer, J.7
-
18
-
-
0034681922
-
Crystal structure of the IMP-1 metallo β-lactamase from Pseudomonas aeruginosa and its complex with a mercaptocarboxylate inhibitor: Binding determinants of a potent, broad-spectrum inhibitor
-
Concha, N. O., Janson, C. A., Rowling, P., Pearson, S., Cheever, C. A., Clarke, B. P., Lewis, C., Galleni, M., Frere, J. M., Payne, D. J., Bateson, J. H., and Abdel-Meguid, S. S. (2000) Crystal structure of the IMP-1 metallo β-lactamase from Pseudomonas aeruginosa and its complex with a mercaptocarboxylate inhibitor: binding determinants of a potent, broad-spectrum inhibitor, Biochemistry 39, 4288-4298.
-
(2000)
Biochemistry
, vol.39
, pp. 4288-4298
-
-
Concha, N.O.1
Janson, C.A.2
Rowling, P.3
Pearson, S.4
Cheever, C.A.5
Clarke, B.P.6
Lewis, C.7
Galleni, M.8
Frere, J.M.9
Payne, D.J.10
Bateson, J.H.11
Abdel-Meguid, S.S.12
-
19
-
-
0032497362
-
Crystal structure of the zinc-dependent β-lactamase from Bacillus cereus at 1.9 Å resolution: Binuclear active site with features of a mononuclear enzyme
-
Fabiane, S. M., Sohi, M. K., Wan, T., Payne, D. J., Bateson, J. H., Mitchell, T., and Sutton, B. J. (1998) Crystal structure of the zinc-dependent β-lactamase from Bacillus cereus at 1.9 Å resolution: binuclear active site with features of a mononuclear enzyme, Biochemistry 37, 12404-12411.
-
(1998)
Biochemistry
, vol.37
, pp. 12404-12411
-
-
Fabiane, S.M.1
Sohi, M.K.2
Wan, T.3
Payne, D.J.4
Bateson, J.H.5
Mitchell, T.6
Sutton, B.J.7
-
20
-
-
0035852802
-
Familial mutations and zinc stoichiometry determine the rate-limiting step of nitrocefin hydrolysis by metallo-β-lactamase from Bacteroides fragilis
-
Fast, W., Wang, Z., and Benkovic, S. J. (2001) Familial mutations and zinc stoichiometry determine the rate-limiting step of nitrocefin hydrolysis by metallo-β-lactamase from Bacteroides fragilis, Biochemistry 40, 1640-1650.
-
(2001)
Biochemistry
, vol.40
, pp. 1640-1650
-
-
Fast, W.1
Wang, Z.2
Benkovic, S.J.3
-
21
-
-
0033931234
-
Amino acid substitutions in a variant of IMP-1 metallo-β-lactamase
-
Iyobe, S., Kusadokoro, H., Ozaki, J., Matsumura, N., Minami, S., Haruta, S., Sawai, T., and O'Hara, K. (2000) Amino acid substitutions in a variant of IMP-1 metallo-β-lactamase, Antimicrob. Agents Chemother. 44, 2023-2027.
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 2023-2027
-
-
Iyobe, S.1
Kusadokoro, H.2
Ozaki, J.3
Matsumura, N.4
Minami, S.5
Haruta, S.6
Sawai, T.7
O'Hara, K.8
-
22
-
-
0025959141
-
Transferable imipenem resistance in Pseudomonas aeruginosa
-
Watanabe, M., Iyobe, S., Inoue, M., and Mitsuhashi, S. (1991) Transferable imipenem resistance in Pseudomonas aeruginosa, Antimicrob. Agents Chemother. 35, 147-151.
-
(1991)
Antimicrob. Agents Chemother.
, vol.35
, pp. 147-151
-
-
Watanabe, M.1
Iyobe, S.2
Inoue, M.3
Mitsuhashi, S.4
-
23
-
-
0035118069
-
IMP-4, a novel metallo-β-lactamase from nosocomial Acinetobacter spp. collected in Hong Kong between 1994 and 1998
-
Chu, Y. W., Afzal-Shah, M., Houang, E. T., Palepou, M. I., Lyon, D. J., Woodford, N., and Livermore, D. M. (2001) IMP-4, a novel metallo-β-lactamase from nosocomial Acinetobacter spp. collected in Hong Kong between 1994 and 1998, Antimicrob. Agents Chemother. 45, 710-714.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 710-714
-
-
Chu, Y.W.1
Afzal-Shah, M.2
Houang, E.T.3
Palepou, M.I.4
Lyon, D.J.5
Woodford, N.6
Livermore, D.M.7
-
24
-
-
0037167473
-
Molecular characterization of bla(IMP-5), a new integron-borne metallo-β-lactamase gene from an Acinetobacter baumannii nosocomial isolate in Portugal
-
Da Silva, G. J., Correia, M., Vital, C., Ribeiro, G., Sousa, J. C., Leitao, R., Peixe, L., and Duarte, A. (2002) Molecular characterization of bla(IMP-5), a new integron-borne metallo-β-lactamase gene from an Acinetobacter baumannii nosocomial isolate in Portugal, FEMS Microbiol. Lett. 215, 33-39.
-
(2002)
FEMS Microbiol. Lett.
, vol.215
, pp. 33-39
-
-
Da Silva, G.J.1
Correia, M.2
Vital, C.3
Ribeiro, G.4
Sousa, J.C.5
Leitao, R.6
Peixe, L.7
Duarte, A.8
-
25
-
-
0035042388
-
Plasmid-encoded metallo-β-lactamase (IMP-6) conferring resistance to carbapenems, especially meropenem
-
Yano, H., Kuga, A., Okamoto, R., Kitasato, H., Kobayashi, T., and Inoue, M. (2001) Plasmid-encoded metallo-β-lactamase (IMP-6) conferring resistance to carbapenems, especially meropenem, Antimicrob. Agents Chemother. 45, 1343-1348.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 1343-1348
-
-
Yano, H.1
Kuga, A.2
Okamoto, R.3
Kitasato, H.4
Kobayashi, T.5
Inoue, M.6
-
26
-
-
0035212394
-
Outbreak of infection with multidrug-resistant Klebsiella pneumoniae carrying bla(IMP-8) in a university medical center in Taiwan
-
Yan, J. J., Ko, W. C., Tsai, S. H., Wu, H. M., and Wu, J. J. (2001) Outbreak of infection with multidrug-resistant Klebsiella pneumoniae carrying bla(IMP-8) in a university medical center in Taiwan, J. Clin. Microbiol. 39, 4433-4439.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 4433-4439
-
-
Yan, J.J.1
Ko, W.C.2
Tsai, S.H.3
Wu, H.M.4
Wu, J.J.5
-
27
-
-
0036136657
-
Nosocomial outbreak of carbapenem-resistant Pseudomonas aeruginosa with a new bla(IMP) allele, bla(IMP-7)
-
Gibb, A. P., Tribuddharat, C., Moore, R. A., Louie, T. J., Krulicki, W., Livermore, D. M., Palepou, M. F., and Woodford, N. (2002) Nosocomial outbreak of carbapenem-resistant Pseudomonas aeruginosa with a new bla(IMP) allele, bla(IMP-7), Antimicrob. Agents Chemother: 46, 255-258.
-
(2002)
Antimicrob. Agents Chemother.
, vol.46
, pp. 255-258
-
-
Gibb, A.P.1
Tribuddharat, C.2
Moore, R.A.3
Louie, T.J.4
Krulicki, W.5
Livermore, D.M.6
Palepou, M.F.7
Woodford, N.8
-
28
-
-
0036096012
-
Detection of a variant metallo-β-lactamase, IMP-10, from two unrelated strains of Pseudomonas aeruginosa and an alcaligenes xylosoxidans strain
-
Iyobe, S., Kusadokoro, H., Takahashi, A., Yomoda, S., Okubo, T., Nakamura, A., and O'Hara, K. (2002) Detection of a variant metallo-β-lactamase, IMP-10, from two unrelated strains of Pseudomonas aeruginosa and an alcaligenes xylosoxidans strain, Antimicrob. Agents Chemother. 46, 2014-2016.
-
(2002)
Antimicrob. Agents Chemother.
, vol.46
, pp. 2014-2016
-
-
Iyobe, S.1
Kusadokoro, H.2
Takahashi, A.3
Yomoda, S.4
Okubo, T.5
Nakamura, A.6
O'Hara, K.7
-
29
-
-
0037033054
-
Unexpected advanced generation cephalosporinase activity of the Met69Phe variant of SHV β-lactamase
-
Helfand, M. S., Hujer, A. M., Sonnichsen, F. D., and Bonomo, R. A. (2002) Unexpected advanced generation cephalosporinase activity of the Met69Phe variant of SHV β-lactamase, J. Biol. Chem. 277, 44719-44723.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 44719-44723
-
-
Helfand, M.S.1
Hujer, A.M.2
Sonnichsen, F.D.3
Bonomo, R.A.4
-
30
-
-
0037188355
-
Insights into the structure and dynamics of the dinuclear zinc β-lactamase site from Bacteroides fragilis
-
Suarez, D., Brothers, E. N., and Merz, K. M., Jr. (2002) Insights into the Structure and Dynamics of the Dinuclear Zinc β-Lactamase Site from Bacteroides fragilis, Biochemistry 41, 6615-6630.
-
(2002)
Biochemistry
, vol.41
, pp. 6615-6630
-
-
Suarez, D.1
Brothers, E.N.2
Merz K.M., Jr.3
-
31
-
-
0033769641
-
Successful molecular dynamics simulation of the zinc-bound farnesyltransferase using the cationic dummy atom approach
-
Pang, Y. P., Xu, K., Yazal, J. E., and Prendergast, F. G. (2000) Successful molecular dynamics simulation of the zinc-bound farnesyltransferase using the cationic dummy atom approach, Protein Sci. 9, 1857-1865.
-
(2000)
Protein Sci.
, vol.9
, pp. 1857-1865
-
-
Pang, Y.P.1
Xu, K.2
Yazal, J.E.3
Prendergast, F.G.4
-
32
-
-
0035889687
-
Successful molecular dynamics simulation of two zinc complexes bridged by a hydroxide in phosphotriesterase using the cationic dummy atom method
-
Pang, Y. P. (2001) Successful Molecular Dynamics Simulation of Two Zinc Complexes Bridged by a Hydroxide in Phosphotriesterase Using the Cationic Dummy Atom Method, Proteins 45, 183-189.
-
(2001)
Proteins
, vol.45
, pp. 183-189
-
-
Pang, Y.P.1
-
33
-
-
0035840978
-
Molecular dynamics simulations of the mononuclear zinc-β-lactamase from Bacillus cereus complexed with benzylpenicillin and a quantum chemical study of the reaction mechanism
-
Díaz, N., Suárez, D., and Merz, K. (2001) Molecular Dynamics Simulations of the Mononuclear Zinc-β-lactamase from Bacillus cereus Complexed with Benzylpenicillin and a Quantum Chemical Study of the Reaction Mechanism, J. Am. Chem. Soc. 123, 9867-9879.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 9867-9879
-
-
Díaz, N.1
Suárez, D.2
Merz, K.3
-
34
-
-
0035943678
-
Succinic acids as potent inhibitors of plasmid-borne IMP-1 metallo-β-lactamase
-
Toney, J. H., Hammond, G. G., Fitzgerald, P. M., Sharma, N., Balkovec, J. M., Rouen, G. P., Olson, S. H., Hammond, M. L., Greenlee, M. L., and Gao, Y. D. (2001) Succinic acids as potent inhibitors of plasmid-borne IMP-1 metallo-β-lactamase, J. Biol. Chem. 276, 31913-31918.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 31913-31918
-
-
Toney, J.H.1
Hammond, G.G.2
Fitzgerald, P.M.3
Sharma, N.4
Balkovec, J.M.5
Rouen, G.P.6
Olson, S.H.7
Hammond, M.L.8
Greenlee, M.L.9
Gao, Y.D.10
-
35
-
-
0036882098
-
Molecular dynamics simulations of the dinuclear zinc-β-lactamase from Bacteroides fragilis complexed with imipenem
-
Suarez, D., Diaz, N., and Merz, K. M., Jr. (2002) Molecular dynamics simulations of the dinuclear zinc-β-lactamase from Bacteroides fragilis complexed with imipenem, J. Comput. Chem. 23, 1587-1600.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1587-1600
-
-
Suarez, D.1
Diaz, N.2
Merz K.M., Jr.3
-
36
-
-
0003712427
-
-
University of California, San Francisco
-
Case, D. A., Pearlman, D. A., Caldwell, J. W., Cheatham, T. E., III, Ross, W. S., Simmerling, C. L., Darden, T. A., Merz, K. M., Jr., Stanton, R. V., Cheng, A. L., Vincent, J. J., Crowley, M., Tsui, V., Radmer, R. J., Duan, Y., Pitera, J., and Massove, I. (1999) AMBER, version 6.0, University of California, San Francisco.
-
(1999)
AMBER, Version 6.0
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham T.E. III4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz K.M., Jr.8
Stanton, R.V.9
Cheng, A.L.10
Vincent, J.J.11
Crowley, M.12
Tsui, V.13
Radmer, R.J.14
Duan, Y.15
Pitera, J.16
Massove, I.17
-
37
-
-
0347652666
-
Ab initio calculations of proton dissociation energies of zinc ligands: Hypothesis of imidazolate as zinc ligand in proteins
-
Yazal, J., and Pang, Y. (1999) Ab Initio Calculations of Proton Dissociation Energies of Zinc Ligands: Hypothesis of Imidazolate as Zinc Ligand in Proteins, J. Phys. Chem. B 103, 8773-8779.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 8773-8779
-
-
Yazal, J.1
Pang, Y.2
-
38
-
-
0029989461
-
Reversal of the hydrogen bond to zinc ligand histidine-119 dramatically diminishes catalysis and enhances metal equilibration kinetics in carbonic anhydrase II
-
Huang, C., Lesburg, C. A., Kiefer, L. L., Fierke, C. A., and Christianson, D. W. (1996) Reversal of the Hydrogen Bond to Zinc Ligand Histidine-119 Dramatically Diminishes Catalysis and Enhances Metal Equilibration Kinetics in Carbonic Anhydrase II, Biochemistry, 35, 3439-3446.
-
(1996)
Biochemistry
, vol.35
, pp. 3439-3446
-
-
Huang, C.1
Lesburg, C.A.2
Kiefer, L.L.3
Fierke, C.A.4
Christianson, D.W.5
-
39
-
-
0020374498
-
Determination and analysis of the 2 Å structure of copper, zinc superoxide dismutase
-
Tainer, J. A., Getzoff, E. D., Beem, K. M., Richardson, J. S., and Richardson, D. C. (1982) Determination and analysis of the 2 Å structure of copper, zinc superoxide dismutase, J. Mol. Biol. 160, 181-217.
-
(1982)
J. Mol. Biol.
, vol.160
, pp. 181-217
-
-
Tainer, J.A.1
Getzoff, E.D.2
Beem, K.M.3
Richardson, J.S.4
Richardson, D.C.5
-
40
-
-
0029011701
-
A 2nd generation force-field for the simulation of proteins, nucleic-acids, and organic-molecules
-
Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. (1995) A 2nd Generation Force-Field for the Simulation of Proteins, Nucleic-Acids, and Organic-Molecules, J. Am. Chem. Soc. 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
41
-
-
84946450438
-
Algorithms for macromolecular dynamics and constraint dynamics
-
van Gunsteren, W. F., and Berendsen, H. J. C. (1977) Algorithms for macromolecular dynamics and constraint dynamics, Mol. Phys. 34, 1311-1327.
-
(1977)
Mol. Phys.
, vol.34
, pp. 1311-1327
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
42
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual Molecular Dynamics, J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
43
-
-
0033840714
-
Functional analysis of the active site of a metallo-β-lactamase proliferating in Japan
-
Haruta, S., Yamaguchi, H., Yamamoto, E. T., Eriguchi, Y., Nukaga, M., O'Hara, K., and Sawai, T. (2000) Functional analysis of the active site of a metallo-β-lactamase proliferating in Japan, Antimicrob. Agents Chemother. 44, 2304-2309.
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 2304-2309
-
-
Haruta, S.1
Yamaguchi, H.2
Yamamoto, E.T.3
Eriguchi, Y.4
Nukaga, M.5
O'Hara, K.6
Sawai, T.7
-
44
-
-
34248394698
-
Probing substrate binding to Metalloβ-Lactamase LI from Stenotrophomonas maltophilia by using site-directed mutagenesis
-
Carenbauer, A. L., Garrity, J. D., Periyannan, G., Yates, R. B., and Crowder, M. W. (2002) Probing substrate binding to Metalloβ-Lactamase LI from Stenotrophomonas maltophilia by using site-directed mutagenesis, BMC Biochem. 3, 4.
-
(2002)
BMC Biochem.
, vol.3
, pp. 4
-
-
Carenbauer, A.L.1
Garrity, J.D.2
Periyannan, G.3
Yates, R.B.4
Crowder, M.W.5
-
45
-
-
0031910020
-
Locally accessible conformations of proteins: Multiple molecular dynamics simulations of crambin
-
Caves, L. S., Evanseck, J. D., and Karplus, M. (1998) Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin, Protein Sci. 7, 649-666.
-
(1998)
Protein Sci.
, vol.7
, pp. 649-666
-
-
Caves, L.S.1
Evanseck, J.D.2
Karplus, M.3
-
46
-
-
0037103003
-
Assessing equilibration and convergence in biomolecular simulations
-
Smith, L. J., Daura, X., and van Gunsteren, W. F. (2002) Assessing equilibration and convergence in biomolecular simulations, Proteins 48, 487-496.
-
(2002)
Proteins
, vol.48
, pp. 487-496
-
-
Smith, L.J.1
Daura, X.2
Van Gunsteren, W.F.3
-
47
-
-
0037038372
-
Absolute comparison of simulated and experimental protein-folding dynamics
-
Snow, C., Nguyen, H., Pande, V., and Gruebele, M. (2002) Absolute comparison of simulated and experimental protein-folding dynamics, Nature 420, 102-106.
-
(2002)
Nature
, vol.420
, pp. 102-106
-
-
Snow, C.1
Nguyen, H.2
Pande, V.3
Gruebele, M.4
-
48
-
-
0036428782
-
Simulation of folding of a small α-helical protein in atomistic detail using worldwide-distributed computing
-
Zagrovic, B., Snow, C. D., Shirts, M. R., and Pande, V. S. (2002) Simulation of Folding of a Small α-helical Protein in Atomistic Detail using Worldwide-distributed Computing, J. Mol. Biol. 323, 927-937.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 927-937
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.S.4
-
49
-
-
0035119114
-
Standard numbering scheme for class B β-lactamases
-
Galleni, M., Lamotte-Brasseur, J., Rossolini, G. M., Spencer, J., Dideberg, O., and Frere, J. M. (2001) Standard numbering scheme for class B β-lactamases, Antimicrob. Agents Chemother. 45, 660-663.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 660-663
-
-
Galleni, M.1
Lamotte-Brasseur, J.2
Rossolini, G.M.3
Spencer, J.4
Dideberg, O.5
Frere, J.M.6
-
50
-
-
0035313529
-
Characterization of the active-site residues asparagine 167 and lysine 161 of the IMP-1 metallo β-lactamase
-
Haruta, S., Yamamoto, E. T., Eriguchi, Y., and Sawai, T. (2001) Characterization of the active-site residues asparagine 167 and lysine 161 of the IMP-1 metallo β-lactamase, FEMS Microbiol. Lett. 197, 85-89.
-
(2001)
FEMS Microbiol. Lett.
, vol.197
, pp. 85-89
-
-
Haruta, S.1
Yamamoto, E.T.2
Eriguchi, Y.3
Sawai, T.4
-
51
-
-
0035190707
-
Identification of residues critical for metallo-5-lactamase function by codon randomization and selection
-
Materon, I. C., and Palzkill, T. (2001) Identification of residues critical for metallo-5-lactamase function by codon randomization and selection, Protein Sci. 10, 2556-2565.
-
(2001)
Protein Sci.
, vol.10
, pp. 2556-2565
-
-
Materon, I.C.1
Palzkill, T.2
-
52
-
-
0033056949
-
Kinetic properties and metal content of the metallo-βlactamase CcrA harboring selective amino acid substitutions
-
Yang, Y., Keeney, D., Tang, X., Canfield, N., and Rasmussen, B. A. (1999) Kinetic properties and metal content of the metallo-βlactamase CcrA harboring selective amino acid substitutions, J. Biol. Chem. 274, 15706-15711.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 15706-15711
-
-
Yang, Y.1
Keeney, D.2
Tang, X.3
Canfield, N.4
Rasmussen, B.A.5
-
53
-
-
0034687116
-
Mutational analysis of metallo-β-lactamase CcrA from Bacteroides fragilis
-
Yanchak, M. P., Taylor, R. A., and Crowder, M. W. (2000) Mutational analysis of metallo-β-lactamase CcrA from Bacteroides fragilis, Biochemistty 39, 11330-11339.
-
(2000)
Biochemistty
, vol.39
, pp. 11330-11339
-
-
Yanchak, M.P.1
Taylor, R.A.2
Crowder, M.W.3
-
54
-
-
0038451324
-
Insight into the mechanism of the IMP-1 metallo-β-lactamase by molecular dynamics simulations
-
Oelschlaeger, P., Schmid, R. D., and Pleiss, J. (2003) Insight into the mechanism of the IMP-1 metallo-β-lactamase by molecular dynamics simulations, Protein Eng. 16, 341-350.
-
(2003)
Protein Eng.
, vol.16
, pp. 341-350
-
-
Oelschlaeger, P.1
Schmid, R.D.2
Pleiss, J.3
|