SCOPUS 정보 검색 플랫폼

Biochemistry

Volumn 41, Issue 21, 2002, Pages 6615-6630

Insights into the structure and dynamics of the dinuclear zinc β-lactamase site from Bacteroides fragilis

(3) Suárez, Dimas a Brothers, Edward N b Merz Jr , Kenneth M b

a UNIVERSITY OF OVIEDO (Spain)

b PENNSYLVANIA STATE UNIVERSITY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTONATION;

COMPUTER SIMULATION; ENZYMES; MOLECULAR DYNAMICS; SODIUM; ZINC;

BIOCHEMISTRY;

BETA LACTAMASE; UNCLASSIFIED DRUG; ZINC BETA LACTAMASE;

ARTICLE; BACTEROIDES FRAGILIS; CALCULATION; DYNAMICS; ENZYME STRUCTURE; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTON TRANSPORT; SIMULATION; STRUCTURE ANALYSIS;

ASPARTIC ACID; BACTEROIDES FRAGILIS; BETA-LACTAMASES; BINDING SITES; COMPUTER SIMULATION; CYSTEINE; HYDROPHOBICITY; METALLOPROTEINS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PROTEIN CONFORMATION; SODIUM; ZINC; ZINC COMPOUNDS;

BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDES FRAGILIS; NEGIBACTERIA;

EID: 0037188355 PISSN: 00062960 EISSN: None Source Type: Journal
DOI: 10.1021/bi0121860 Document Type: Article

Times cited : (76)

References (60)

1
- 0034680167
- (2000) Nature , vol.406 , pp. 775-781
- Walsh, C.¹

2
- 0034123845
- (2000) Chem. Biol. , vol.7 , pp. 127-132
- Wright, G.D.¹

3
- 0001817705
- (Page, M. I., Ed.), Blackie Academic&Professional, London
- (1992) The Chemistry of β-Lactams , pp. 199-227
- Waley, S.G.¹

4
- 0032032930
- (1998) Biochem. J. , vol.330 , pp. 581-598
- Matagne, A.¹ Lamotte-Brasseur, J.² Frère, J.M.³

5
- 0033783426
- (2000) Curr. Opin. Microbiol. , vol.3 , pp. 489-495
- Livermore, D.M.¹ Woodford, N.²

6
- 0032868673
- (1999) Curr. Opin. Chem. Biol. , vol.3 , pp. 614-622
- Wang, Z.¹ Fast, W.² Valentine, A.M.³ Benkovic, S.J.⁴

7
- 0004286818
- (1998) Clin. Infect. Dis.
- Bush, K.¹

8
- 0033023138
- (1999) FEBS Lett. , vol.443 , pp. 109-111
- Prosperi-Meys, C.¹ Llabres, G.² De Seny, D.³ Paul-Soto, R.⁴ Hernández-Valladares, M.⁵ Laraki, N.⁶ Frère, J.M.⁷ Galleni, M.⁸

9
- 0033840714
- (2000) Antimicrob. Agents Chemother. , vol.44 , pp. 2304-2309
- Haruta, S.¹ Yamaguchi, H.² Yamamoto, E.T.³ Eriguchi, Y.⁴ Nukaga, M.⁵ O'Hara, K.⁶ Sawai, T.⁷

10
- 0034023159
- (2000) Antimicrob. Agents Chemother. , vol.44 , pp. 891-897
- Poirel, L.¹ Naas, T.² Nicolas, D.³ Collet, L.⁴ Bellais, S.⁵ Cavallo, J.D.⁶ Nordmann, P.⁷

11
- 0034088144
- (2000) J. Clin. Microbiol. , vol.38 , pp. 1290-1292
- Tsakris, A.¹ Pournaras, S.² Woodford, N.³ Palepou, A.F.I.⁴ Babini, G.S.⁵ Douboyas, J.⁶ Livermore, D.M.⁷

12
- 0032587031
- (1999) Antimicrob. Agents Chemother. , vol.43 , pp. 1584-1590
- Lauretti, L.¹ Riccio, M.L.² Mazzariol, A.³ Cornaglia, G.⁴ Amicosante, G.⁵ Fontana, R.⁶ Rossolini, G.M.⁷

13
- 0000966782
- (1996) Structure , vol.4 , pp. 623-635
- Concha, N.O.¹ Rasmussen, B.A.² Bush, K.³ Herzberg, O.⁴

14
- 0031887008
- (1998) Acta Crystallogr. D , vol.54 , pp. 47-57
- Carfi, A.¹ Duée, E.² Paul-Soto, R.³ Galleni, M.⁴ Frère, J.M.⁵ Dideberg, O.⁶

15
- 0032510815
- (1998) Biochemistry , vol.37 , pp. 6791-6800
- Fitzgerald, P.M.D.¹ Wu, J.K.² Toney, J.H.³

16
- 13144295022
- (1998) Chem. Biol. , vol.5 , pp. 185-196
- Toney, J.H.¹ Fitzgerald, P.M.D.² Grover-Sharma, N.³ Olson, S.H.⁴ May, W.J.⁵ Sundelof, J.G.⁶ Vanderwall, D.E.⁷ Cleary, K.A.⁸ Grant, S.K.⁹ Wu, J.K.¹⁰ Kozarich, J.W.¹¹ Pompliano, D.L.¹² Hammond, G.G.¹³

17
- 0033517787
- (1999) Biochemistry , vol.38 , pp. 14507-14514
- Scrofani, S.D.B.¹ Chung, J.² Huntley, J.J.A.³ Benkovic, S.J.⁴ Wright, P.E.⁵ Dyson, H.J.⁶

18
- 0034619511
- (2000) Biochemistry , vol.39 , pp. 13356-13364
- Huntley, J.J.A.¹ Scrofani, S.D.B.² Osborne, M.J.³ Wright, P.E.⁴ Dyson, H.J.⁵

19
- 0032951167
- (1999) Protein Sci. , vol.8 , pp. 249-252
- Li, Z.¹ Rasmussen, B.A.² Herzberg, O.³

20
- 0034687116
- (2000) Biochemistry , vol.39 , pp. 11330-11339
- Yanchak, M.P.¹ Taylor, R.A.² Crowder, M.W.³

21
- 0033056949
- (2000) J. Biol. Chem. , vol.274 , pp. 15706-15711
- Yang, Y.¹ Keeney, D.² Tang, X.³ Canfield, N.⁴ Rasmussen, B.A.⁵

22
- 0035852802
- (2001) Biochemistry , vol.40 , pp. 1640-1650
- Fast, W.¹ Wang, Z.² Benkovic, S.J.³

23
- 0029808391
- (1996) Biochemistry , vol.35 , pp. 12126-12132
- Crowder, M.W.¹ Wang, Z.² Franklin, S.L.³ Zovinka, E.P.⁴ Benkovic, S.J.⁵

24
- 0033531792
- (1999) J. Biol. Chem. , vol.274 , pp. 13242-13249
- Paul-Soto, R.¹ Bauer, R.² Frère, J.M.³ Galleni, M.⁴ Meyer-Klauche, W.⁵ Nolting, H.⁶ Rossolini, G.M.⁷ De Seny, D.⁸ Hernández-Valladares, M.⁹ Zeppezauer, M.¹⁰ Adolph, H.W.¹¹

25
- 0032582569
- (1998) FEBS Lett. , vol.438 , pp. 137-140
- Paul-Soto, R.¹ Hernández-Valladares, M.² Galleni, M.³ Bauer, R.⁴ Zeppezauer, M.⁵ Frère, J.M.⁶ Adolph, H.W.⁷

26
- 0035451514
- (2001) Proteins: Struct., Funct., Genet. , vol.44 , pp. 448-459
- Salsbury, F.R.¹ Crowley, M.F.² Brooks, C.L.³

27
- 0039927392
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 4197-4208
- Díaz, N.¹ Suárez, D.² Merz K.M., Jr.³

28
- 0035940261
- (2001) J. Phys. Chem. B , vol.105 , pp. 8040-8049
- Krauss, M.¹ Gilson, H.R.S.² Gresh, N.³

29
- 0043144732
- (1995) J. Chem. Phys. , vol.103 , pp. 5674-5678
- Yang, W.¹ Lee, T.-S.²

30
- 0346506503
- (1997) J. Chem. Phys. , vol.107 , pp. 879-893
- Dixon, S.L.¹ Merz K.M., Jr.²

31
- 84873055189
- John Wiley & Sons, New York
- (1986) Ab Initio Molecular Orbital Theory
- Hehre, W.J.¹ Radom, L.² Schleyer, P.V.R.³ Pople, J.A.⁴

32
- 0003418036
- (Yarkony, D. R., Ed.), World Scientific, Singapore
- (1995) Modern Electronic Structure Theory Part II
- Becke, A.D.¹

33
- 0001508425
- (1998) J. Chem. Phys. , vol.109 , pp. 1223-1230
- Rasolov, V.A.¹ Pople, J.A.² Patner, M.A.³ Windus, T.L.⁴

35
- 36148995600
- (1985) J. Chem. Phys. , vol.83 , pp. 735-746
- Reed, A.E.¹ Weinstock, R.B.² Weinhold, F.³

36
- 84988129057
- (1989) J. Comput. Chem. , vol.10 , pp. 209-220
- Stewart, J.J.P.¹

37
- 84986525833
- (1991) J. Comput. Chem. , vol.12 , pp. 320-341
- Stewart, J.J.P.¹

38
- 2142668547
- in press
- (2002) J. Comput. Chem.
- Brothers, E.N.¹ Suárez, D.² Deerfield, D.W.³ Merz, K.M.⁴

39
- 0004186194
- The Pennsylvania State University, University Park, PA
- (1999) DivCon 99
- Dixon, S.L.¹ Van der Vaart, A.² Gogonea, V.³ Vincent, J.J.⁴ Brothers, E.N.⁵ Suárez, D.⁶ Westerhoff, L.M.⁷ Metz, K.M.J.⁸

40
- 0034829463
- (2001) J. Am. Chem. Soc. , vol.123 , pp. 3759-3770
- Suárez, D.¹ Merz K.M., Jr.²

41
- 0001067597
- (1991) J. Am. Chem. Soc. , vol.113 , pp. 8262-8270
- Hoops, S.C.¹ Anderson, K.W.² Merz K.M., Jr.³

42
- 0028815118
- (1995) Proteins , vol.21 , pp. 40-56
- Ryde, U.¹

43
- 0004223683
- University of California, San Francisco
- (1995) LEaP
- Schafmeister, C.¹ Ross, W.S.² Romanovski, V.³

44
- 0029011701
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 5179-5197
- Cornell, W.D.¹ Cieplak, P.² Bayly, C.I.³ Gould, I.R.⁴ Merz K.M., Jr.⁵ Ferguson, D.M.⁶ Spellmeyer, D.C.⁷ Fox, T.⁸ Caldwell, J.W.⁹ Kollman, P.A.¹⁰

45
- 0003712427
- University of California, San Francisco
- (1997) AMBER, version 6.0
- Case, D.A.¹ Pearlman, D.A.² Caldwell, J.W.³ Cheatham T.E. II⁴ Ross, W.S.⁵ Simmerling, C.L.⁶ Darden, T.A.⁷ Merz K.M., Jr.⁸ Stanton, R.V.⁹ Cheng, A.L.¹⁰ Vincent, J.J.¹¹ Crowley, M.¹² Ferguson, D.M.¹³ Radmer, R.J.¹⁴ Seibel, G.L.¹⁵ Singh, U.C.¹⁶ Kollman, P.A.¹⁷

46
- 84946450438
- (1977) Mol. Phys. , vol.34 , pp. 1311
- Van Gunsteren, W.F.¹ Berendsen, H.J.C.²

47
- 85052507481
- Clarendon Press, Oxford, U.K.
- (1987) Computer Simulation of Liquids
- Allen, M.P.¹ Tildesley, D.J.²

48
- 33750587438
- (1984) J. Chem. Phys. , vol.81 , pp. 3684-3690
- Berendsen, H.J.C.¹ Potsma, J.P.M.² Van Gunsteren, W.F.³ DiNola, A.D.⁴ Haak, J.R.⁵

49
- 33645961739
- (1995) J. Chem. Phys. , vol.103 , pp. 8577-8593
- Essman, V.¹ Perera, L.² Berkowitz, M.L.³ Darden, T.⁴ Lee, H.⁵ Pedersen, L.G.⁶

50
- 0000577932
- (1995) J. Chem. Phys. , vol.103 , pp. 3668-3679
- Petersen, H.G.¹

51
- 0001339532
- (1991) J. Appl. Ctystallogr. , vol.24 , pp. 946-950
- Kraulis, P.J.¹

52
- 0030815133
- (1997) Methods Enzymol. , vol.277 , pp. 505-524
- Merritt, E.A.¹ Bacon, D.J.²

53
- 2142796221
- The Pennsylvania State University, University Park, PA
- (1999) ROAR, version 2.0
- Cheng, A.¹ Stanton, R.S.² Vincent, J.J.³ Van der Vaart, A.⁴ Damodaran, K.V.⁵ Dixon, S.L.⁶ Hartsough, D.S.⁷ Mori, M.⁸ Best, S.A.⁹ Monard, G.¹⁰ Garcia, M.¹¹ Van Zant, L.C.¹² Merz, K.M.J.¹³

54
- 84962467100
- (1999) J. Phys. Chem. A , vol.103 , pp. 5171-5178
- Gogonea, V.¹ Merz K.M., Jr.²

55
- 0343725680
- (2000) J. Chem. Phys. , vol.113 , pp. 10512-10523
- Van der Vaart, A.¹ Suárez, D.² Merz K.M., Jr.³

56
- 0033581183
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 7279-7282
- Zhan, C.G.¹ De Souza, N.² Rittenhouse, R.³ Ornstein, R.⁴

57
- 0032553559
- (1998) J. Mol. Biol. , vol.284 , pp. 125-136
- Ullah, J.H.¹ Walsh, T.R.² Taylor, I.A.³ Emery, D.C.⁴ Verma, C.S.⁵ Gamblin, S.J.⁶ Spencer, J.⁷

58
- 0042226481
- (2000) Chem. Phys. Lett. , vol.326 , pp. 288-292
- Díaz, N.¹ Suárez, D.² Merz K.M., Jr.³

59
- 0033520073
- (1999) Biochemistry , vol.38 , pp. 10013-10023
- Wang, Z.¹ Fast, W.² Benkovic, S.J.³

60
- 0032575621
- (1998) J. Biol. Chem. , vol.273 , pp. 22402-22408
- Wang, Z.¹ Benkovic, S.J.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.