Global regulation of Hox gene expression in C. elegans by a SAM domain protein

Developmental Cell

Volumn 4, Issue 6, 2003, Pages 903-915

  Zhang, Hong ^a,b   Azevedo, Ricardo B R ^a,c   Lints, Robyn ^a   Doyle, Christina ^a   Teng, Yingqi ^a   Haber, Daniel ^b   Emmons, Scott W ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c University of Houston   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAENORHABDITIS ELEGANS PROTEIN; HOX PROTEIN; REGULATOR PROTEIN; SOP 2 PROTEIN; TRANSCRIPTION FACTOR ETS 1; UNCLASSIFIED DRUG; WNT PROTEIN;

ANIMAL CELL; ARTICLE; CAENORHABDITIS ELEGANS; CELL NUCLEUS INCLUSION BODY; COMPLEX FORMATION; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; EVOLUTION; GENE ACTIVITY; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE MUTATION; GENE REPRESSION; GENETIC TRANSFORMATION; HOX GENE; MALE; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; ANIMALS; CAENORHABDITIS ELEGANS; CAENORHABDITIS ELEGANS PROTEINS; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, HELMINTH; GENES, HOMEOBOX; LARVA; MALE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PHENOTYPE; PHYLOGENY; PHYSICAL CHROMOSOME MAPPING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; REPRESSOR PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; INVERTEBRATA; NEMATODA;

EID: 0038243171     PISSN: 15345807     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1534-5807(03)00136-9     Document Type: Article

References (46)

1. Aboobaker A. Blaxter M. Hox gene loss during dynamic evolution of the nematode cluster Curr. Biol. 13 2003 37-40
2. Aguinaldo A.M.A. Turbeville J.M. Linford L.S. Rivera M.C. Garey J.R. Raff R.A. Lake J.A. Evidence for a clade of nematodes, arthropods and other moulting animals Nature 387 1997 489-493
3. Barr M.M. Sternberg P.W. A polycystic kidney-disease gene homologue required for male mating behaviour in C. elegans Nature 401 1999 386-389
4. Bateman A. Birney E. Cerruti L. Durbin R. Etwiller L. Eddy S.R. Griffiths-Jones S. Howe K.L. Marshall M. Sonnhammer E.L.L. The Pfam protein families database Nucleic Acids Res. 30 2002 276-280
5. Bornemann D. Miller E. Simon J. The Drosophila Polycomb group gene Sex comb on midleg (Scm) encodes a zinc finger protein with similarity to polyhomeotic protein Development 122 1996 1621-1630
6. Bujnicki J.M. Elofsson A. Fischer D. Rychlewski L. Structure prediction meta server Bioinformatics 17 2001 750-751
7. Chakrabarti S.R. Sood R. Nandi S. Nucifora G. Posttranslational modification of TEL and TEL/AML1 by SUMO-1 and cell-cycle-dependent assembly into nuclear bodies Proc. Natl. Acad. Sci. USA 97 2000 13281-13285
8. Chamberlin H.M. Thomas J.H. The bromodomain protein LIN-49 and trithorax-related protein LIN-59 affect development and gene expression in Caenorhabditis elegans Development 127 2000 713-723
9. Ch'ng Q. Kenyon C. egl-27 generates anteroposterior patterns of cell fusion in C. elegans by regulating Hox gene expression and Hox protein function Development 126 1999 3303-3312
10. Colovos C. Yeates T.O. Verification of protein structures: patterns of nonbonded atomic interactions Protein Sci. 2 1993 1511-1519
11. Cowing D. Kenyon C. Correct Hox gene expression established independently of position in Caenorhabditis elegans Nature 382 1996 353-356
12. Duboule D. The vertebrate limb: a model system to study the Hox Hom gene network during development and evolution Bioessays 14 1992 375-384
13. Ferreira H.B. Zhang Y.H. Zhao C.N. Emmons S.W. Patterning of Caenorhabditis elegans posterior structures by the Abdominal-B homolog, egl-5 Dev. Biol. 207 1999 215-228
14. Francis N.J. Kingston R.E. Mechanisms of transcriptional memory Nat. Rev. Mol. Cell Biol. 2 2001 409-421
15. Gellon G. McGinnis W. Shaping animal body plans in development and evolution by modulation of Hox expression patterns Bioessays 20 1998 116-125
16. Gleason J.E. Korswagen H.C. Eisenmann D.M. Activation of Wnt signaling bypasses the requirement for RTK/Ras signaling during C. elegans vulval induction Genes Dev. 16 2002 1281-1290
17. Holdeman R. Nehrt S. Strome S. MES-2, a maternal protein essential for viability of the germline in Caenorhabditis elegans, is homologous to a Drosophila Polycomb group protein Development 125 1998 2457-2467
18. Huelsenbeck J.P. Ronquist F. MrBayes: Bayesian inference of phylogenetic trees Bioinformatics 17 2001 754-755
19. Hunter C.P. Harris J.M. Maloof J.N. Kenyon C. Hox gene expression in a single Caenorhabditis elegans cell is regulated by a caudal homolog and intercellular signals that inhibit Wnt signaling Development 126 1999 805-814
20. Hunter C.P. Kenyon C. Specification of anteroposterior cell fates in Caenorhabditis elegans by Drosophila Hox proteins Nature 377 1995 229-232
21. Jacobs J.J.L. van Lohuizen M. Polycomb repression: from cellular memory to cellular proliferation and cancer Biochim. Biophys. Acta 1602 2002 151-161
22. Katoh-Fukui Y. Tsuchiya R. Shiroishi T. Nakahara Y. Hashimoto N. Noguchi K. Higashinakagawa T. Male-to-female sex reversal in M33 mutant mice Nature 393 1998 688-692
23. Kenyon C.J. Austin J. Costa M. Cowing D.W. Harris J.M. Honigberg L. Hunter C.P. Maloof J.N. Muller-Immergluck M.M. Salser S.J. et al. The dance of the Hox genes: patterning the anteroposterior body axis of Caenorhabditis elegans Cold Spring Harb. Symp. Quant. Biol. 62 1997 293-305
24. AKim C.A. Gingery M. Pilpa R.M. Bowie J.U. The SAM domain of polyhomeotic forms a helical polymer Nat. Struct. Biol. 9 2002 453-457
25. Kim C.A. Phillips M.L. Kim W. Gingery M. Tran H.H. Robinson M.A. Faham S. Bowie J.U. Polymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression EMBO J. 20 2001 4173-4182
26. Korf I. Fan Y.A. Strome S. The Polycomb group in Caenorhabditis elegans and maternal control of germline development Development 125 1998 2469-2478
27. Korswagen H.C. Coudreuse D.Y.M. Betist M.C. van de Water S. Zivkovic D. Clevers H.C. The Axin-like protein PRY-1 is a negative regulator of a canonical Wnt pathway in C. elegans Genes Dev. 16 2002 1291-1302
28. Kyba M. Brock H.W. The SAM domain of polyhomeotic, RAE28, and scm mediates specific interactions through conserved residues Dev. Genet. 22 1998 74-84
29. Lichtneckert R. Muller P. Schmid V. Reber-Muller S. Evolutionary conservation of the chromatin modulator Polycomb in the jellyfish Podocoryne carnea Differentiation 70 2002 422-428
30. Maloof J.N. Kenyon C. The Hox gene lin-39 is required during C. elegans vulval induction to select the outcome of Ras signaling Development 125 1998 181-190
31. Maloof J.N. Whangbo J. Harris J.M. Jongeward G.D. Kenyon C. A Wnt signaling pathway controls Hox gene expression and neuroblast migration in C. elegans Development 126 1999 37-49
32. Netter S. Faucheux M. Theodore L. Developmental dynamics of a polyhomeotic-EGFP fusion in vivo DNA Cell Biol. 20 2001 483-492
33. Peterson K.J. Eernisse D.J. Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences Evol. Dev. 3 2001 170-205
34. Raaphorst F.M. Otte A.P. Meijer C. Polycomb-group genes as regulators of mammalian lymphopoiesis Trends Immunol. 22 2001 682-690
35. Ross J.M. Zarkower D. Polycomb group regulation of Hox gene expression in C. elegans Dev. Cell 4 2003 891 901 this issue,
36. Ruvkun G. Hobert O. The taxonomy of developmental control in Caenorhabditis elegans Science 282 1998 2033-2041
37. Salser S.J. Kenyon C. A C. elegans Hox gene switches on, off, on and off again to regulate proliferation, differentiation and morphogenesis Development 122 1996 1651-1661
38. Satijn D.P.E. Otte A.P. Polycomb group protein complexes: do different complexes regulate distinct target genes? Biochim. Biophys. Acta 1447 1999 1-16
39. Schultz J. Ponting C.P. Hofmann K. Bork P. SAM as a protein interaction domain involved in developmental regulation Protein Sci. 6 1997 249-253
40. Simon J.A. Tamkun J.W. Programming off and on states in chromatin: mechanisms of Polycomb and trithorax group complexes Curr. Opin. Genet. Dev. 12 2002 210-218
41. Stoyanov C. Fleischmann M. Suzuki Y. Tapparel N. Gautron F. Streit A. Wood W. Müller F. Expression of the C. elegans labial orthologue ceh-13 during male tail morphogenesis Dev. Biol. in press 2003
42. Sze J.Y. Victor M. Loer C. Shi Y. Ruvkun G. Food and metabolic signaling defects in a Caenorhabditis elegans serotonin-synthesis mutant Nature 403 2000 560-564
43. Wittmann C. Bossinger O. Goldstein B. Fleischmann M. Kohler R. Brunschwig K. Tobler H. Muller F. The expression of the C. elegans labial-like Hox gene ceh-13 during early embryogenesis relies on cell fate and on anteroposterior cell polarity Development 124 1997 4193-4200
44. Yang Z.H. Paml: a program package for phylogenetic analysis by maximum likelihood Comput. Appl. Biosci. 13 1997 555-556
45. Yang Z.H. Nielsen R. Hasegawa M. Models of amino acid substitution and applications to mitochondrial protein evolution Mol. Biol. Evol. 15 1998 1600-1611
46. Zhang H. Emmons S.W. A C. elegans mediator protein confers regulatory selectivity on lineage-specific expression of a transcription factor gene Genes Dev. 14 2000 2161-2172