-
1
-
-
0032489015
-
The cell as a collection of protein machines - Preparing the next generation of molecular biologists
-
Alberts, B. The cell as a collection of protein machines - preparing the next generation of molecular biologists. Cell 92, 291-294 (1998).
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
2
-
-
0034406521
-
Macromolecular electron microscopy in the era of structural genomics
-
Baumeister, W. & Steven, A. C. Macromolecular electron microscopy in the era of structural genomics. Trends Biochem. Sci. 25, 624-631 (2000).
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 624-631
-
-
Baumeister, W.1
Steven, A.C.2
-
3
-
-
0033400935
-
Challenges at the frontiers of structural biology
-
Sali, A. & Kuriyan, J. Challenges at the frontiers of structural biology. Trends Biochem. Sci. 24, M20-M24 (1999).
-
(1999)
Trends Biochem. Sci.
, vol.24
-
-
Sali, A.1
Kuriyan, J.2
-
4
-
-
0036205337
-
The CATH protein family database: A resource for structural and functional annotation of genomes
-
Orengo, C. A. et al. The CATH protein family database: a resource for structural and functional annotation of genomes. Proteomics 2, 11-21 (2002).
-
(2002)
Proteomics
, vol.2
, pp. 11-21
-
-
Orengo, C.A.1
-
5
-
-
0033152756
-
Estimating the total number of protein folds
-
Govindarajan, S., Recabarren, R. & Goldstein, R. A. Estimating the total number of protein folds. Proteins 35, 408-414 (1999).
-
(1999)
Proteins
, vol.35
, pp. 408-414
-
-
Govindarajan, S.1
Recabarren, R.2
Goldstein, R.A.3
-
6
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte, E. M., Pellegrini, M., Thompson, M. J., Yeates, T. O. & Eisenberg, D. A combined algorithm for genome-wide prediction of protein function. Nature 402, 83-86 (1999).
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
7
-
-
0036081347
-
MIPS: A database for genomes and protein sequences
-
Mewes, H. W. et al. MIPS: a database for genomes and protein sequences. Nucleic Acid. Res. 30, 31-34 (2002).
-
(2002)
Nucleic Acid. Res.
, vol.30
, pp. 31-34
-
-
Mewes, H.W.1
-
8
-
-
0034747024
-
YPD, PombePD and WormPD: Model org anism volumes of the BioKnowledge library, an integrated resource for protein information
-
Costanzo, M. C. et al. YPD, PombePD and WormPD: model org anism volumes of the BioKnowledge library, an integrated resource for protein information. Nucleic Acids Res. 29, 75-79 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 75-79
-
-
Costanzo, M.C.1
-
9
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering, C. et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417, 399-403 (2002).
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
-
10
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito, T. et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98, 4569-4574 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
-
11
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P. et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627 (2000).
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
-
12
-
-
0037163883
-
Potential artefacts in protein-interaction networks
-
Aloy, P. & Russell, R. B. Potential artefacts in protein-interaction networks. FEBS Lett. 530, 253-254 (2002).
-
(2002)
FEBS Lett.
, vol.530
, pp. 253-254
-
-
Aloy, P.1
Russell, R.B.2
-
13
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A. C. et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147 (2002).
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
-
14
-
-
0036899363
-
The third dimension for protein interactions and complexes
-
Aloy, P. & Russell, R. B. The third dimension for protein interactions and complexes. Trends Biochem. Sci. 27, 633-638 (2002).
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 633-638
-
-
Aloy, P.1
Russell, R.B.2
-
15
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
Jansen, R., Greenbaum, D. & Gerstein, M. Relating whole-genome expression data with protein-protein interactions. Genome Res. 2, 37-46 (2002).
-
(2002)
Genome Res.
, vol.2
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
16
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
Ge, H., Liu, Z., Church, G. M. & Vidal, M. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nature Genet. 4, 482-486 (2001).
-
(2001)
Nature Genet.
, vol.4
, pp. 482-486
-
-
Ge, H.1
Liu, Z.2
Church, G.M.3
Vidal, M.4
-
17
-
-
0036805329
-
Bridging structural biology and genomics: Assessing protein interaction data with known complexes
-
Edwards, A. M. et al. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends Genet. 10, 529-536 (2002).
-
(2002)
Trends Genet.
, vol.10
, pp. 529-536
-
-
Edwards, A.M.1
-
18
-
-
0037050020
-
Protein complexes take the bait
-
Kumar, A. & Snyder, M. Protein complexes take the bait. Nature 415, 123-124 (2002).
-
(2002)
Nature
, vol.415
, pp. 123-124
-
-
Kumar, A.1
Snyder, M.2
-
19
-
-
0037182924
-
The society of proteins
-
Abbott, A. The society of proteins. Nature 417, 894-896 (2002).
-
(2002)
Nature
, vol.417
, pp. 894-896
-
-
Abbott, A.1
-
20
-
-
18444373540
-
The Protein Data Bank: Unifying the archive
-
Westbrook, J. et al. The Protein Data Bank: unifying the archive. Nucleic Acids Res. 30, 245-248 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 245-248
-
-
Westbrook, J.1
-
21
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution
-
Cramer, P., Bushnell, D. A. & Kornberg, R. D. Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution. Science 292, 1863-1876 (2001).
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
22
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
Ban, N., Nissen, P., Hansen, J., Moore, P. B. & Steitz, T. A. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289, 905-920 (2000).
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
23
-
-
0035977093
-
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
Harms, J. et al. High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107, 679-688 (2001).
-
(2001)
Cell
, vol.107
, pp. 679-688
-
-
Harms, J.1
-
24
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly, B. T. et al. Structure of the 30S ribosomal subunit. Nature 407, 327-339 (2000).
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
-
25
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
Yusupov, M. M. et al. Crystal structure of the ribosome at 5.5 Å resolution. Science 292, 883-896 (2001).
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
-
26
-
-
0033767365
-
Automation of X-ray crystallography
-
Abola, E., Kuhn, P., Earnest, T. & Stevens, R. C. Automation of X-ray crystallography. Nature Struct. Biol. 7, 973-977 (2000).
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 973-977
-
-
Abola, E.1
Kuhn, P.2
Earnest, T.3
Stevens, R.C.4
-
27
-
-
0242642758
-
Automatic sample mounting and alignment system for biological crystallography
-
in the press
-
Snell, G. et al. Automatic sample mounting and alignment system for biological crystallography. J. Synchrotron Radiat. (in the press).
-
J. Synchrotron Radiat.
-
-
Snell, G.1
-
28
-
-
0032831070
-
Structural genomics: Beyond the Human Genome Project
-
Burley, S. K. et al. Structural genomics: beyond the Human Genome Project. Nature Genet. 23, 151-157 (1999).
-
(1999)
Nature Genet.
, vol.23
, pp. 151-157
-
-
Burley, S.K.1
-
29
-
-
0034995092
-
Completeness in structural genomics
-
Vitkup, D., Melamud, E., Moult, J. & Sander, C. Completeness in structural genomics. Nature Struct. Biol. 8, 559-566 (2001).
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 559-566
-
-
Vitkup, D.1
Melamud, E.2
Moult, J.3
Sander, C.4
-
30
-
-
0001638544
-
Structural genomics
-
Structural genomics. Nature Struct. Biol. 7(Suppl.), 927-994 (2000).
-
(2000)
Nature Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 927-994
-
-
-
32
-
-
0025292355
-
Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy
-
Henderson, R. Baldwin, J. M. & Ceska, T. A. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213, 899-929 (1990).
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 899-929
-
-
Henderson, R.1
Baldwin, J.M.2
Ceska, T.A.3
-
33
-
-
0028147508
-
Atomic model of plant light-harvesting complex by electron crystallography
-
Kuhlbrandt, W., Wang, D. N. & Fujiyoshi, Y. Atomic model of plant light-harvesting complex by electron crystallography. Nature 367, 614-621 (1994).
-
(1994)
Nature
, vol.367
, pp. 614-621
-
-
Kuhlbrandt, W.1
Wang, D.N.2
Fujiyoshi, Y.3
-
34
-
-
0029903197
-
Electron crystallographic refinement of the structure of bacteriorhodopsin
-
Grigorieff, N., Ceska, T. A., Downing, K. H., Baldwin, J. M. & Henderson, R. Electron crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259, 393-421 (1996).
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 393-421
-
-
Grigorieff, N.1
Ceska, T.A.2
Downing, K.H.3
Baldwin, J.M.4
Henderson, R.5
-
35
-
-
0032495513
-
Structure of the αβ tubulin dimer by electron crystallography
-
Nogales, E., Wolf, S. G. & Downing, K. H. Structure of the αβ tubulin dimer by electron crystallography. Nature 391, 199-203 (1998).
-
(1998)
Nature
, vol.391
, pp. 199-203
-
-
Nogales, E.1
Wolf, S.G.2
Downing, K.H.3
-
36
-
-
0033605231
-
The structure of bacteriorhodopsin at 3.0 Å resolution based on electron crystallography: Implication of the charge distribution
-
Mitsuoka, K. et al. The structure of bacteriorhodopsin at 3.0 Å resolution based on electron crystallography: implication of the charge distribution. J. Mol. Biol. 286, 861-882 (1999).
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 861-882
-
-
Mitsuoka, K.1
-
37
-
-
0034609808
-
Structural determinants of water permeation through aquaporin-1
-
Murata, K. et al. Structural determinants of water permeation through aquaporin-1. Nature 407, 599-605 (2000).
-
(2000)
Nature
, vol.407
, pp. 599-605
-
-
Murata, K.1
-
38
-
-
0035834521
-
Refined structure of αβ-tubulin at 3.5 Å resolution
-
Lowe, J., Li, H., Downing, K. H. & Nogales, E. Refined structure of αβ-tubulin at 3.5 Å resolution. J. Mol. Biol. 313, 1045-1057 (2001).
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 1045-1057
-
-
Lowe, J.1
Li, H.2
Downing, K.H.3
Nogales, E.4
-
39
-
-
0030937751
-
Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy
-
Conway, J. F. et al. Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy. Nature 386, 91-94 (1997).
-
(1997)
Nature
, vol.386
, pp. 91-94
-
-
Conway, J.F.1
-
40
-
-
1842409555
-
Determination of the fold of the core protein of hepatitis B virus by cryo-electron microscopy
-
Bottcher, B., Wynne, S. A. & Crowther, R. A. Determination of the fold of the core protein of hepatitis B virus by cryo-electron microscopy. Nature 386 88-91 (1997).
-
(1997)
Nature
, vol.386
, pp. 88-91
-
-
Bottcher, B.1
Wynne, S.A.2
Crowther, R.A.3
-
41
-
-
0036774026
-
Microtubule structure at 8 Å resolution
-
Li, H. L., DeRosier, D. J., Nicholson, W. V., Nogales, E. & Downing, K. H. Microtubule structure at 8 Å resolution. Structure 10, 1317-1328 (2002).
-
(2002)
Structure
, vol.10
, pp. 1317-1328
-
-
Li, H.L.1
DeRosier, D.J.2
Nicholson, W.V.3
Nogales, E.4
Downing, K.H.5
-
42
-
-
18744374439
-
A giant protease with a twist: The TPP II complex from Drosophila studied by electron microscopy
-
Rockel, B., Peters, J., Kuhlmorgen, B., Glaeser, R. M. & Baumeister, W. A giant protease with a twist: the TPP II complex from Drosophila studied by electron microscopy. EMBO J. 21, 5979-5984 (2002).
-
(2002)
EMBO J.
, vol.21
, pp. 5979-5984
-
-
Rockel, B.1
Peters, J.2
Kuhlmorgen, B.3
Glaeser, R.M.4
Baumeister, W.5
-
43
-
-
0029003107
-
The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules
-
Henderson, R. The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules. Q. Rev. Biophys. 28, 171-193 (1995).
-
(1995)
Q. Rev. Biophys.
, vol.28
, pp. 171-193
-
-
Henderson, R.1
-
44
-
-
0034517231
-
Leginon: An automated system for acquisition of images from vitreous ice specimens
-
Carragher, B. et al. Leginon: an automated system for acquisition of images from vitreous ice specimens. J. Struct. Biol 132, 33-45 (2000).
-
(2000)
J. Struct. Biol.
, vol.132
, pp. 33-45
-
-
Carragher, B.1
-
45
-
-
0035783259
-
Automated data collection with a Tecnai 12 electron mikroscope: Applications for molecular imaging by cryomicroscopy
-
Zhang, P. J., Beatty, A., Milne, J. L. S. & Subramaniam, S. Automated data collection with a Tecnai 12 electron mikroscope: applications for molecular imaging by cryomicroscopy. J. Struct. Biol. 135, 251-261, (2001).
-
(2001)
J. Struct. Biol.
, vol.135
, pp. 251-261
-
-
Zhang, P.J.1
Beatty, A.2
Milne, J.L.S.3
Subramaniam, S.4
-
46
-
-
0035783362
-
Automated identification of filaments in cryoelectron microscopy images
-
Zhu, Y. X., Carragher, B., Kriegman, D. J., Milligan, R. A. & Potter, C. S. Automated identification of filaments in cryoelectron microscopy images. J. Struct. Biol. 135, 302-312 (2001).
-
(2001)
J. Struct. Biol.
, vol.135
, pp. 302-312
-
-
Zhu, Y.X.1
Carragher, B.2
Kriegman, D.J.3
Milligan, R.A.4
Potter, C.S.5
-
47
-
-
0035783056
-
Combining electron microscopic with X-ray crystallographic structures
-
Rossmann, M. G., Bernal, R. & Pletnev, S. V. Combining electron microscopic with X-ray crystallographic structures. J. Struct. Biol. 136, 190-200 (2001).
-
(2001)
J. Struct. Biol.
, vol.136
, pp. 190-200
-
-
Rossmann, M.G.1
Bernal, R.2
Pletnev, S.V.3
-
48
-
-
0035783173
-
Using Situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers, W. & Birmanns, S. Using Situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133, 193-202 (2001).
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
49
-
-
0032779888
-
Quantitative fitting of atomic models into observed densities derived by electron microscopy
-
Volkmann, N. & Hanein, D. Quantitative fitting of atomic models into observed densities derived by electron microscopy. J. Struct. Biol. 125, 176-184 (1999).
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 176-184
-
-
Volkmann, N.1
Hanein, D.2
-
50
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
Chacon, P. & Wriggers, W. Multi-resolution contour-based fitting of macromolecular structures. J. Mol. Biol. 317, 375-384 (2002).
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 375-384
-
-
Chacon, P.1
Wriggers, W.2
-
51
-
-
0025236617
-
Prediction of the three-dimensional structure of Escherichia coli 30S ribosomal subunit: A molecular mechanics approach
-
Malhotra, A., Tan, R. K. & Harvey, S. C. Prediction of the three-dimensional structure of Escherichia coli 30S ribosomal subunit: a molecular mechanics approach. Proc. Natl. Acad. Sci. USA 87, 1950-1954 (1990).
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1950-1954
-
-
Malhotra, A.1
Tan, R.K.2
Harvey, S.C.3
-
52
-
-
0036023943
-
A complex prediction: Three-dimensional model of the yeast exosome
-
Aloy, P. et al. A complex prediction: three-dimensional model of the yeast exosome. EMBO Rep. 3, 628-635 (2002).
-
(2002)
EMBO Rep.
, vol.3
, pp. 628-635
-
-
Aloy, P.1
-
53
-
-
0035798380
-
Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interactions
-
Spahn, C. M. et al. Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interactions. Cell 107, 373-386 (2001).
-
(2001)
Cell
, vol.107
, pp. 373-386
-
-
Spahn, C.M.1
-
54
-
-
0036815763
-
Electron tomography: Towards visualizing the molecular organization of the cytoplasm
-
Baumeister, W. Electron tomography: towards visualizing the molecular organization of the cytoplasm. Clin. Opin. Struct. Biol. 12, 679-684 (2002).
-
(2002)
Clin. Opin. Struct. Biol.
, vol.12
, pp. 679-684
-
-
Baumeister, W.1
-
55
-
-
0033082710
-
Electron tomography of molecules and cells
-
Baumeister, W., Grimm, R. & Walz, J. Electron tomography of molecules and cells. Trends Cell Biol. 9, 81-85 (1999).
-
(1999)
Trends Cell Biol.
, vol.9
, pp. 81-85
-
-
Baumeister, W.1
Grimm, R.2
Walz, J.3
-
56
-
-
0037044862
-
Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography
-
Medalia, O. et al. Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science 298, 1209-1213 (2002).
-
(2002)
Science
, vol.298
, pp. 1209-1213
-
-
Medalia, O.1
-
57
-
-
85031224867
-
Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: Implications of crowding
-
in press
-
Grunewald, K., Medalia, O., Gross, A., Steven, A. & Baumeister, W. Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding. Biophys. Chem. (in press).
-
Biophys. Chem.
-
-
Grunewald, K.1
Medalia, O.2
Gross, A.3
Steven, A.4
Baumeister, W.5
-
58
-
-
0034687769
-
Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms
-
Bohm, J. et al. Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms. Proc. Natl Acad. Sci. USA 97, 14245-14250 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 14245-14250
-
-
Bohm, J.1
-
59
-
-
0037195186
-
Identification of macromolecular complexes in electron cryotomograms of phantom cells
-
Frangakis, A. S. et al. Identification of macromolecular complexes in electron cryotomograms of phantom cells. Proc. Natl. Acad. Sci. USA 99, 14153-14158 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14153-14158
-
-
Frangakis, A.S.1
-
60
-
-
0031926887
-
Electron tomography of ice-embedded prokaryotic cells
-
Grimm, R. et al. Electron tomography of ice-embedded prokaryotic cells. Biophys. J. 74, 1031-1042 (1998).
-
(1998)
Biophys. J.
, vol.74
, pp. 1031-1042
-
-
Grimm, R.1
-
61
-
-
0036680450
-
In vivo veritas electron cryotomography of cells
-
Plitzko, J. et al. In vivo veritas electron cryotomography of cells. Trends Biotechnol. 20, S40-S44 (2002).
-
(2002)
Trends Biotechnol.
, vol.20
-
-
Plitzko, J.1
-
62
-
-
0031422134
-
Perspectives of molecular and cellular electron tomography
-
Koster, A. J. et al. Perspectives of molecular and cellular electron tomography. J. Struct. Biol. 120, 276-308 (1997).
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 276-308
-
-
Koster, A.J.1
-
63
-
-
0033377941
-
Electron crystallography: Present excitement, a nod to the past, anticipating the future
-
Glaeser, R. M. Electron crystallography: present excitement, a nod to the past, anticipating the future. S. Struct. Biol. 128, 3-14 (1999).
-
(1999)
S. Struct. Biol.
, vol.128
, pp. 3-14
-
-
Glaeser, R.M.1
-
64
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang, G. Y. et al. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution. Cell 98, 811-824 (1999).
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.Y.1
-
65
-
-
0037062977
-
NMR analysis of a 900K GroEL-GroES complex
-
Fiaux, J., Bertelsen, E. B., Horwich, A. L. & Wuthrich, K. NMR analysis of a 900K GroEL-GroES complex. Nature 418, 207-211 (2002).
-
(2002)
Nature
, vol.418
, pp. 207-211
-
-
Fiaux, J.1
Bertelsen, E.B.2
Horwich, A.L.3
Wuthrich, K.4
-
66
-
-
18244366113
-
An NMR approach to structural proteomics
-
Yee, A. et al. An NMR approach to structural proteomics. Proc. Natl. Acad. Sci. USA 99, 1825-1830 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1825-1830
-
-
Yee, A.1
-
68
-
-
0036302354
-
Determination of the interface of a large protein complex by transferred cross-saturation measurements
-
Nakanishi, T. et al. Determination of the interface of a large protein complex by transferred cross-saturation measurements. J. Mol. Biol. 318, 245-249 (2002).
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 245-249
-
-
Nakanishi, T.1
-
69
-
-
0036490372
-
NMR in drug discovery
-
Pellecchia, M., Sem, D. S. & Wuthrich, K. NMR in drug discovery. Nature Rev. Drug Discov. 1, 211-219 (2002).
-
(2002)
Nature Rev. Drug Discov.
, vol.1
, pp. 211-219
-
-
Pellecchia, M.1
Sem, D.S.2
Wuthrich, K.3
-
70
-
-
0036089703
-
Single-particle imaging of macromolecules by cryo-electron microscopy
-
Frank, J. Single-particle imaging of macromolecules by cryo-electron microscopy. Annu. Rev. Biophys. Biomol. Struct. 31, 303-319 (2002).
-
(2002)
Annu. Rev. Biophys. Biomol. Struct.
, vol.31
, pp. 303-319
-
-
Frank, J.1
-
71
-
-
0036424944
-
A novel three-dimensional variant of the watershed transform for segmentation of electron density maps
-
Volkmann, N. A novel three-dimensional variant of the watershed transform for segmentation of electron density maps. J. Struct. Biol. 138, 123-129 (2002).
-
(2002)
J. Struct. Biol.
, vol.138
, pp. 123-129
-
-
Volkmann, N.1
-
72
-
-
0034695924
-
The yeast nuclear pore complex: Composition, architecture, and transport mechanism
-
Rout, M. P. et al. The yeast nuclear pore complex: composition, architecture, and transport mechanism. J. Cell Biol 148, 635-651 (2000).
-
(2000)
J. Cell Biol.
, vol.148
, pp. 635-651
-
-
Rout, M.P.1
-
73
-
-
0034650492
-
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry
-
Rappsilber, J., Siniossoglou, S., Hurt, E. C. & Mann, M. A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry. Anal. Chem. 72, 267-275 (2000).
-
(2000)
Anal. Chem.
, vol.72
, pp. 267-275
-
-
Rappsilber, J.1
Siniossoglou, S.2
Hurt, E.C.3
Mann, M.4
-
74
-
-
0034705128
-
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
-
Young, M. M. et al. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc. Natl. Acad. Sci. USA 97, 5802-5806 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5802-5806
-
-
Young, M.M.1
-
75
-
-
0031029388
-
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
-
Neubauer, G. et al. Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry. Proc. Natl Acad. Sci. USA 94, 385-390 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 385-390
-
-
Neubauer, G.1
-
76
-
-
0031711073
-
Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex
-
Neubauer, G. et al. Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex. Nature Genet. 20, 46-50 (1998).
-
(1998)
Nature Genet.
, vol.20
, pp. 46-50
-
-
Neubauer, G.1
-
77
-
-
0033547324
-
Identification of in vivo substrates of the chaperonin GroEL
-
Houry, W. A., Frishman, D., Eckerskorn, C., Lottspeich, F. & Hartl, F. U. Identification of in vivo substrates of the chaperonin GroEL. Nature 402, 147-154 (1999).
-
(1999)
Nature
, vol.402
, pp. 147-154
-
-
Houry, W.A.1
Frishman, D.2
Eckerskorn, C.3
Lottspeich, F.4
Hartl, F.U.5
-
78
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y. et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183 (2002).
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
79
-
-
0037133275
-
Mapping by site-directed mutagenesis of the region responsible for cohesin-dockerin interaction on the surface of the seventh cohesin domain of Clostridium thermocellum CipA
-
Miras, I., Schaeffer, F., Beguin, P. & Alzari, P. M. Mapping by site-directed mutagenesis of the region responsible for cohesin-dockerin interaction on the surface of the seventh cohesin domain of Clostridium thermocellum CipA. Biochemistry 41, 2115-2119 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 2115-2119
-
-
Miras, I.1
Schaeffer, F.2
Beguin, P.3
Alzari, P.M.4
-
80
-
-
0026350498
-
Systematic mutational analyses of protein-protein interfaces
-
Wells, J. A. Systematic mutational analyses of protein-protein interfaces. Methods Enzymol. 202, 390-411 (1991).
-
(1991)
Methods Enzymol.
, vol.202
, pp. 390-411
-
-
Wells, J.A.1
-
81
-
-
0028085208
-
Structure from function: Screening structural models with functional data
-
Jin, L., Cohen, F. E. & Wells, J. A. Structure from function: screening structural models with functional data. Proc. Natl. Acad. Sci. USA 91, 113-117 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 113-117
-
-
Jin, L.1
Cohen, F.E.2
Wells, J.A.3
-
82
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R. W. & Brown, P. O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470 (1995).
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
83
-
-
0034659898
-
Genomics, gene expression and DNA arrays
-
Lockhart, D. J. & Winzeler, E. A. Genomics, gene expression and DNA arrays. Nature 405, 827-836 (2000).
-
(2000)
Nature
, vol.405
, pp. 827-836
-
-
Lockhart, D.J.1
Winzeler, E.A.2
-
84
-
-
0035812694
-
Protein structure prediction and structural genomics
-
Baker, D. & Sali, A. Protein structure prediction and structural genomics. Science 294, 93-96 (2001).
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
85
-
-
0034985005
-
Ab initio protein structure prediction: Progress and prospects
-
Bonneau, R. & Baker, D. Ab initio protein structure prediction: progress and prospects. Annu. Rev. Biophys. Biomol. Struct. 30, 173-189 (2001).
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 173-189
-
-
Bonneau, R.1
Baker, D.2
-
86
-
-
0036968925
-
De novo prediction of three-dimensional structures for major protein families
-
Bonneau, R. et al. De novo prediction of three-dimensional structures for major protein families. J. Mol. Biol. 322, 65-78 (2002).
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 65-78
-
-
Bonneau, R.1
-
87
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M. A. et al. Comparative protein structure modeling of genes and genomes. Annu. Rev. Biophys. Biomol. Struct. 29, 291-325 (2000).
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
-
88
-
-
0034615787
-
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy
-
Domingues, F. S., Lackner, P., Andreeva, A. & Sippl, M. J. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy. J. Mol. Biol 297, 1003-1013 (2000).
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 1003-1013
-
-
Domingues, F.S.1
Lackner, P.2
Andreeva, A.3
Sippl, M.J.4
-
89
-
-
0036089481
-
MODBASE a database of annotated comparative protein structure models
-
Pieper, U., Eswar, N., Stuart, A. C., Ilyin, V. A. & Sali, A. MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res. 30, 255-259 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 255-259
-
-
Pieper, U.1
Eswar, N.2
Stuart, A.C.3
Ilyin, V.A.4
Sali, A.5
-
90
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith, G. R. & Sternberg, M. J. E. Prediction of protein-protein interactions by docking methods. Curr. Opin. Struct. Biol. 12, 28-35 (2002).
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 28-35
-
-
Smith, G.R.1
Sternberg, M.J.E.2
-
91
-
-
13344275187
-
Molecular docking programs successfully predict the binding of a β-lactamase inhibitory protein to TEM-1 β-lactamase
-
Strynadka, N. C. J. et al. Molecular docking programs successfully predict the binding of a β-lactamase inhibitory protein to TEM-1 β-lactamase. Nature Struct. Biol. 3, 233-239 (1996).
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 233-239
-
-
Strynadka, N.C.J.1
-
92
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A. J., Iliopoulos, I., Kyrpides, N. C. & Ouzounis, C. A. Protein interaction maps for complete genomes based on gene fusion events. Nature 402, 86-90 (1999).
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
93
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek, R., Fonstein, M., D'Souza, M., Pusch, G. D. & Maltsev, N. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. USA 96, 2896-2901 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
94
-
-
0034595516
-
Co-evolution of proteins with their interaction partners
-
Goh, C. S., Bogan, A. A., Joachimiak, M., Walther, D. & Cohen, F. E. Co-evolution of proteins with their interaction partners. J. Mol. Biol. 299, 283-293 (2000).
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 283-293
-
-
Goh, C.S.1
Bogan, A.A.2
Joachimiak, M.3
Walther, D.4
Cohen, F.E.5
-
95
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
Pazos, F. & Valencia, A. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng. 14, 609-614 (2001).
-
(2001)
Protein Eng.
, vol.14
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
96
-
-
0036568319
-
In silico two-hybrid system for the selection of physically interacting protein pairs
-
Pazos, F. & Valencia, A. In silico two-hybrid system for the selection of physically interacting protein pairs. Proteins 47, 219-227 (2002).
-
(2002)
Proteins
, vol.47
, pp. 219-227
-
-
Pazos, F.1
Valencia, A.2
-
97
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge, O., Bourne, H. R. & Cohen, F. E. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 257, 342-358 (1996).
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
98
-
-
0035232248
-
Generating protein interaction maps from incomplete data: Application to fold assignment
-
Lappe, M., Park, J., Niggemann, O. & Holm, L. Generating protein interaction maps from incomplete data: application to fold assignment. Bioinformatics 17, S149-S156 (2001).
-
(2001)
Bioinformatics
, vol.17
-
-
Lappe, M.1
Park, J.2
Niggemann, O.3
Holm, L.4
-
99
-
-
0037197902
-
Interrogating protein interaction networks through structural biology
-
Aloy, P. & Russell, R. B. Interrogating protein interaction networks through structural biology. Proc. Natl. Acad. Sci. USA 99, 5896-5901 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5896-5901
-
-
Aloy, P.1
Russell, R.B.2
|