-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
2
-
-
0030812487
-
Homing endonucleases: Keeping the house in order
-
Belfort M, Roberts RJ. 1997. Homing endonucleases: Keeping the house in order. Nucleic Acids Res. 25:3379-88
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3379-3388
-
-
Belfort, M.1
Roberts, R.J.2
-
3
-
-
0031879978
-
Germline bottlenecks and the evolutionary maintenance of mitochondrial genomes
-
Bergstrom CT, Pritchard J. 1998. Germline bottlenecks and the evolutionary maintenance of mitochondrial genomes. Genetics 149:2135-46
-
(1998)
Genetics
, vol.149
, pp. 2135-2146
-
-
Bergstrom, C.T.1
Pritchard, J.2
-
4
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-42
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
6
-
-
0000367652
-
The limits of amino acid sequence data in angiosperm phylogenetic reconstruction
-
Bremer K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803
-
(1988)
Evolution
, vol.42
, pp. 795-803
-
-
Bremer, K.1
-
7
-
-
0034825790
-
Obcells as protoorganisms: Membrane heredity, lithophosphorylation, and the origins of the genetic code, the first cells, and photosynthesis
-
Cavalier-Smith T. 2001. Obcells as protoorganisms: Membrane heredity, lithophosphorylation, and the origins of the genetic code, the first cells, and photosynthesis. J. Mol. Evol. 53:555-95
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 555-595
-
-
Cavalier-Smith, T.1
-
8
-
-
0035941473
-
Herbicide resistance from a divided EP-SPS protein: The split Synechocystis DnaE intein as an in vivo affinity domain
-
Chen L, Pradhan S, Evans TC Jr. 2001. Herbicide resistance from a divided EP-SPS protein: The split Synechocystis DnaE intein as an in vivo affinity domain. Gene 263:39-48
-
(2001)
Gene
, vol.263
, pp. 39-48
-
-
Chen, L.1
Pradhan, S.2
Evans T.C., Jr.3
-
9
-
-
0035883706
-
Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
-
Chevalier BS, Stoddard BL. 2001. Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res. 29:3757-74
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3757-3774
-
-
Chevalier, B.S.1
Stoddard, B.L.2
-
11
-
-
17744415288
-
Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element
-
Chong S, Mersha FB, Comb DG, Scott ME, Landry D, et al. 1997. Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element. Gene 192:271-81
-
(1997)
Gene
, vol.192
, pp. 271-281
-
-
Chong, S.1
Mersha, F.B.2
Comb, D.G.3
Scott, M.E.4
Landry, D.5
-
12
-
-
0032534048
-
Utilizing the C-terminal cleavage activity of a protein splicing element to purify recombinant proteins in a single chromatographic step
-
Chong S, Montello GE, Zhang A, Cantor EJ, Liao W, et al. 1998. Utilizing the C-terminal cleavage activity of a protein splicing element to purify recombinant proteins in a single chromatographic step. Nucleic Acids Res. 26:5109-15
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5109-5115
-
-
Chong, S.1
Montello, G.E.2
Zhang, A.3
Cantor, E.J.4
Liao, W.5
-
13
-
-
0030911066
-
Protein splicing of the Saccharomyces cerevisiae VMA intein without the endonuclease motifs
-
Chong S, Xu MQ. 1997. Protein splicing of the Saccharomyces cerevisiae VMA intein without the endonuclease motifs. J. Biol. Chem. 272:15587-90
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15587-15590
-
-
Chong, S.1
Xu, M.Q.2
-
14
-
-
0032571440
-
A topA intein in Pyrococcusfuriosus and its relatedness to the r-gyr intein of Methanococcus jannaschii
-
Chute IC, Hu Z, Liu XQ. 1998. A topA intein in Pyrococcusfuriosus and its relatedness to the r-gyr intein of Methanococcus jannaschii. Gene 210:85-92
-
(1998)
Gene
, vol.210
, pp. 85-92
-
-
Chute, I.C.1
Hu, Z.2
Liu, X.Q.3
-
15
-
-
0027315426
-
Protein splicing of the yeast TFP1 intervening protein sequence: A model for self-excision
-
Cooper AA, Chen YJ, Lindorfer MA, Stevens TH. 1993. Protein splicing of the yeast TFP1 intervening protein sequence: A model for self-excision. EMBO J. 12:2575-83
-
(1993)
EMBO J.
, vol.12
, pp. 2575-2583
-
-
Cooper, A.A.1
Chen, Y.J.2
Lindorfer, M.A.3
Stevens, T.H.4
-
16
-
-
0029116947
-
Protein splicing: Self-splicing of genetically mobile elements at the protein level
-
Cooper AA, Stevens TH. 1995. Protein splicing: Self-splicing of genetically mobile elements at the protein level. Trends Biochem. Sci. 20:351-56
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 351-356
-
-
Cooper, A.A.1
Stevens, T.H.2
-
17
-
-
0030729344
-
Statistical modeling and analysis of the LAGLI-DADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family
-
Dalgaard JZ, Klar AJ, Moser MJ, Holley WR, Chatterjee A, Mian IS. 1997. Statistical modeling and analysis of the LAGLI-DADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Nucleic Acids Res. 25:4626-38
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4626-4638
-
-
Dalgaard, J.Z.1
Klar, A.J.2
Moser, M.J.3
Holley, W.R.4
Chatterjee, A.5
Mian, I.S.6
-
18
-
-
0030789206
-
Statistical modeling, phylogenetic analysis and structure prediction of a protein splicing domain common to inteins and hedgehog proteins
-
Dalgaard JZ, Moser MJ, Hughey R, Mian IS. 1997. Statistical modeling, phylogenetic analysis and structure prediction of a protein splicing domain common to inteins and hedgehog proteins. J. Comput. Biol. 4:193-214
-
(1997)
J. Comput. Biol.
, vol.4
, pp. 193-214
-
-
Dalgaard, J.Z.1
Moser, M.J.2
Hughey, R.3
Mian, I.S.4
-
19
-
-
0033055899
-
The Mycobacterium tuberculosis recA intein can be used in an ORFTRAP to select for open reading frames
-
Daugelat S, Jacobs WR Jr. 1999. The Mycobacterium tuberculosis recA intein can be used in an ORFTRAP to select for open reading frames. Protein Sci. 8:644-53
-
(1999)
Protein Sci.
, vol.8
, pp. 644-653
-
-
Daugelat, S.1
Jacobs W.R., Jr.2
-
20
-
-
0004149207
-
-
Oxford, UK: Oxford Univ. Press
-
Dawkins R. 1976. The Selfish Gene. Oxford, UK: Oxford Univ. Press
-
(1976)
The Selfish Gene
-
-
Dawkins, R.1
-
21
-
-
0032539667
-
Lightning strikes twice: Intron-intein coincidence
-
Derbyshire V, Belfort M. 1998. Lightning strikes twice: Intron-intein coincidence. Proc. Natl. Acad. Sci. USA 95:1356-57
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1356-1357
-
-
Derbyshire, V.1
Belfort, M.2
-
22
-
-
0030803760
-
Genetic definition of a protein-splicing domain: Functional mini-inteins support structure predictions and a model for intein evolution
-
Derbyshire V, Wood DW, Wu W, Dansereau JT, Dalgaard JZ, Belfort M. 1997. Genetic definition of a protein-splicing domain: Functional mini-inteins support structure predictions and a model for intein evolution. Proc. Natl. Acad. Sci. USA 94:11466-71
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11466-11471
-
-
Derbyshire, V.1
Wood, D.W.2
Wu, W.3
Dansereau, J.T.4
Dalgaard, J.Z.5
Belfort, M.6
-
23
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle WF. 1999. Phylogenetic classification and the universal tree. Science 284:2124-29
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
24
-
-
0032900424
-
The plastid genome of the cryptophyte alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
-
Douglas SE, Penny SL. 1999. The plastid genome of the cryptophyte alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae. J. Mol. Evol. 48:236-44
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 236-244
-
-
Douglas, S.E.1
Penny, S.L.2
-
25
-
-
0030611387
-
Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity
-
Duan X, Gimble FS, Quiocho FA. 1997. Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity. Cell 89:555-64
-
(1997)
Cell
, vol.89
, pp. 555-564
-
-
Duan, X.1
Gimble, F.S.2
Quiocho, F.A.3
-
26
-
-
0024446859
-
Group I introns as mobile genetic elements: Facts and mechanistic speculations - A review
-
Dujon B. 1989. Group I introns as mobile genetic elements: Facts and mechanistic speculations - A review. Gene 82:911-14
-
(1989)
Gene
, vol.82
, pp. 911-914
-
-
Dujon, B.1
-
27
-
-
0027756145
-
Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity
-
Echelard Y, Epstein DJ, St-Jacques B, Shen L, Mohler J, et al. 1993. Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell 75:1417-30
-
(1993)
Cell
, vol.75
, pp. 1417-1430
-
-
Echelard, Y.1
Epstein, D.J.2
St-Jacques, B.3
Shen, L.4
Mohler, J.5
-
28
-
-
0344351815
-
Semisynthesis of cytotoxic proteins using a modified protein splicing element
-
Evans TC Jr, Benner J, Xu MQ. 1998. Semisynthesis of cytotoxic proteins using a modified protein splicing element. Protein Sci. 7:2256-64
-
(1998)
Protein Sci.
, vol.7
, pp. 2256-2264
-
-
Evans T.C., Jr.1
Benner, J.2
Xu, M.Q.3
-
29
-
-
0040187857
-
Protein trans-splicing and cyclization by a naturally split intein from the dnaE gene of Synechocystis species PCC6803
-
Evans TC Jr, Martin D, Kolly R, Panne D, Sun L, et al. 2000. Protein trans-splicing and cyclization by a naturally split intein from the dnaE gene of Synechocystis species PCC6803. J. Biol. Chem. 275:9091-94
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 9091-9094
-
-
Evans T.C., Jr.1
Martin, D.2
Kolly, R.3
Panne, D.4
Sun, L.5
-
30
-
-
0342470656
-
Intein-mediated protein ligation: Harnessing nature's escape artists
-
Evans TC Jr, Xu MQ. 1999. Intein-mediated protein ligation: Harnessing nature's escape artists. Biopolymers 51:333-42
-
(1999)
Biopolymers
, vol.51
, pp. 333-342
-
-
Evans T.C., Jr.1
Xu, M.Q.2
-
31
-
-
0034656221
-
Invasion of a multitude of genetic niches by mobile endonuclease genes
-
Gimble FS. 2000. Invasion of a multitude of genetic niches by mobile endonuclease genes. FEMS Microbiol. Lett. 185:99-107
-
(2000)
FEMS Microbiol. Lett.
, vol.185
, pp. 99-107
-
-
Gimble, F.S.1
-
32
-
-
0035886371
-
Degeneration of a homing endonuclease and its target sequence in a wild yeast strain
-
Gimble FS. 2001. Degeneration of a homing endonuclease and its target sequence in a wild yeast strain. Nucleic Acids Res. 29:4215-23
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4215-4223
-
-
Gimble, F.S.1
-
33
-
-
0028947630
-
Substitutions in conserved dodecapeptide motifs that uncouple the DNA binding and DNA cleavage activities of PI-SceI endonuclease
-
Gimble FS, Stephens BW. 1995. Substitutions in conserved dodecapeptide motifs that uncouple the DNA binding and DNA cleavage activities of PI-SceI endonuclease. J. Biol. Chem. 270:5849-56
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 5849-5856
-
-
Gimble, F.S.1
Stephens, B.W.2
-
34
-
-
0026772764
-
Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae
-
Gimble FS, Thorner J. 1992. Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature 357:301-6
-
(1992)
Nature
, vol.357
, pp. 301-306
-
-
Gimble, F.S.1
Thorner, J.2
-
35
-
-
0030601890
-
Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing
-
Gimble FS, Wang J. 1996. Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing. J. Mol. Biol. 263:163-80
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 163-180
-
-
Gimble, F.S.1
Wang, J.2
-
36
-
-
0033598755
-
Recurrent invasion and extinction of a selfish gene
-
Goddard MR, Burt A. 1999. Recurrent invasion and extinction of a selfish gene. Proc. Natl. Acad. Sci. USA 96:13880-85
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13880-13885
-
-
Goddard, M.R.1
Burt, A.2
-
37
-
-
0030054233
-
Beyond homing: Competition between intron endonucleases confers a selective advantage on flanking genetic markers
-
Goodrich-Blair H, Shub DA. 1996. Beyond homing: Competition between intron endonucleases confers a selective advantage on flanking genetic markers. Cell 84:211-21
-
(1996)
Cell
, vol.84
, pp. 211-221
-
-
Goodrich-Blair, H.1
Shub, D.A.2
-
38
-
-
0032052264
-
Non-canonical inteins
-
Gorbalenya AE. 1998. Non-canonical inteins. Nucleic Acids Res. 26:1741-48
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1741-1748
-
-
Gorbalenya, A.E.1
-
39
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N, Peitsch MC. 1997. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18:2714-23
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
40
-
-
0342813091
-
Crystal structure of a Hedgehog autoprocessing domain: Homology between Hedgehog and self-splicing proteins
-
Hall TM, Porter JA, Young KE, Koonin EV, Beachy PA, Leahy DJ. 1997. Crystal structure of a Hedgehog autoprocessing domain: Homology between Hedgehog and self-splicing proteins. Cell 91:85-97
-
(1997)
Cell
, vol.91
, pp. 85-97
-
-
Hall, T.M.1
Porter, J.A.2
Young, K.E.3
Koonin, E.V.4
Beachy, P.A.5
Leahy, D.J.6
-
41
-
-
0000560347
-
Amino acid residues in both the protein splicing and endonuclease domains of the PI-SceI intein mediate DNA binding
-
He Z, Crist M, Yen H, Duan X, Quiocho FA, Gimble FS. 1998. Amino acid residues in both the protein splicing and endonuclease domains of the PI-SceI intein mediate DNA binding. J. Biol. Chem. 273:4607-15
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 4607-4615
-
-
He, Z.1
Crist, M.2
Yen, H.3
Duan, X.4
Quiocho, F.A.5
Gimble, F.S.6
-
42
-
-
0025240361
-
Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae
-
Hirata R, Ohsumk Y, Nakano A, Kawasaki H, Suzuki K, Anraku Y. 1990. Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae. J. Biol. Chem. 265:6726-33
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 6726-6733
-
-
Hirata, R.1
Ohsumk, Y.2
Nakano, A.3
Kawasaki, H.4
Suzuki, K.5
Anraku, Y.6
-
43
-
-
0027051618
-
Protein splicing removes intervening sequences in an archaea DNA polymerase
-
Hodges RA, Perler FB, Noren CJ, Jack WE. 1992. Protein splicing removes intervening sequences in an archaea DNA polymerase. Nucleic Acids Res. 20:6153-57
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6153-6157
-
-
Hodges, R.A.1
Perler, F.B.2
Noren, C.J.3
Jack, W.E.4
-
44
-
-
0034723273
-
Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking
-
Hu D, Crist M, Duan X, Quiocho FA, Gimble FS. 2000. Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking. J. Biol. Chem. 275:2705-12
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2705-2712
-
-
Hu, D.1
Crist, M.2
Duan, X.3
Quiocho, F.A.4
Gimble, F.S.5
-
46
-
-
0035844128
-
Cyclic green fluorescent protein produced in vivo using an artificially split PI-PfuI intein from Pyrococcus furiosus
-
Iwai H, Lingel A, Pluckthun A. 2001. Cyclic green fluorescent protein produced in vivo using an artificially split PI-PfuI intein from Pyrococcus furiosus. J. Biol. Chem. 276:16548-54
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 16548-16554
-
-
Iwai, H.1
Lingel, A.2
Pluckthun, A.3
-
47
-
-
0011147503
-
-
Junier T, Pagni M. 1999. http://www. isrec.isb-sib.ch/java/dotlet/Dotlet.html
-
(1999)
-
-
Junier, T.1
Pagni, M.2
-
48
-
-
0033567272
-
Homing endonucleases: Structure, function and evolution
-
Jurica MS, Stoddard BL. 1999. Homing endonucleases: Structure, function and evolution. Cell Mol. Life Sci. 55:1304-26
-
(1999)
Cell Mol. Life Sci.
, vol.55
, pp. 1304-1326
-
-
Jurica, M.S.1
Stoddard, B.L.2
-
49
-
-
0025226104
-
Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase
-
Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH. 1990. Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase. Science 250:651-57
-
(1990)
Science
, vol.250
, pp. 651-657
-
-
Kane, P.M.1
Yamashiro, C.T.2
Wolczyk, D.F.3
Neff, N.4
Goebl, M.5
Stevens, T.H.6
-
50
-
-
0030952831
-
Identification of three core regions essential for protein splicing of the yeast Vma1 protozyme. A random mutagenesis study of the entire Vma1-derived endonuclease sequence
-
Kawasaki M, Nogami S, Satow Y, Ohya Y, Anraku Y. 1997. Identification of three core regions essential for protein splicing of the yeast Vma1 protozyme. A random mutagenesis study of the entire Vma1-derived endonuclease sequence. J. Biol. Chem. 272:15668-74
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15668-15674
-
-
Kawasaki, M.1
Nogami, S.2
Satow, Y.3
Ohya, Y.4
Anraku, Y.5
-
51
-
-
0035810165
-
Functional proteins from a random-sequence library
-
Keefe AD, Szostak JW. 2001. Functional proteins from a random-sequence library. Nature 410:715-18
-
(2001)
Nature
, vol.410
, pp. 715-718
-
-
Keefe, A.D.1
Szostak, J.W.2
-
52
-
-
0031975772
-
Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing
-
Klabunde T, Sharma S, Telenti A, Jacobs WR Jr, Sacchettini JC. 1998. Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing. Nat. Struct. Biol. 5:31-36
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 31-36
-
-
Klabunde, T.1
Sharma, S.2
Telenti, A.3
Jacobs W.R., Jr.4
Sacchettini, J.C.5
-
53
-
-
0028944672
-
A protein splice-junction motif in hedgehog family proteins
-
Koonin EV. 1995. A protein splice-junction motif in hedgehog family proteins. Trends Biochem. Sci. 20:141-42
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 141-142
-
-
Koonin, E.V.1
-
54
-
-
0021053220
-
A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae
-
Kostriken R, Strathern JN, Klar AJ, Hicks JB, Heffron F. 1983. A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae. Cell 35:167-74
-
(1983)
Cell
, vol.35
, pp. 167-174
-
-
Kostriken, R.1
Strathern, J.N.2
Klar, A.J.3
Hicks, J.B.4
Heffron, F.5
-
55
-
-
0028641336
-
Autoproteolysis in hedgehog protein biogenesis
-
Lee JJ, Ekker SC, von Kessler DP, Porter JA, Sun BI, Beachy PA. 1994. Autoproteolysis in hedgehog protein biogenesis. Science 266:1528-37
-
(1994)
Science
, vol.266
, pp. 1528-1537
-
-
Lee, J.J.1
Ekker, S.C.2
Von Kessler, D.P.3
Porter, J.A.4
Sun, B.I.5
Beachy, P.A.6
-
56
-
-
0034511180
-
Protein-splicing intein: Genetic mobility, origin, and evolution
-
Liu XQ. 2000. Protein-splicing intein: Genetic mobility, origin, and evolution. Annu. Rev. Genet. 34:61-76
-
(2000)
Annu. Rev. Genet.
, vol.34
, pp. 61-76
-
-
Liu, X.Q.1
-
57
-
-
0030753081
-
A DnaB intein in Rhodothermus marinus: Indication of recent intein homing across remotely related organisms
-
Liu XQ, Hu Z. 1997. A DnaB intein in Rhodothermus marinus: Indication of recent intein homing across remotely related organisms. Proc. Natl. Acad. Sci. USA 94:7851-56
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7851-7856
-
-
Liu, X.Q.1
Hu, Z.2
-
58
-
-
0035814803
-
Characterization of a naturally occurring trans-splicing intein from Synechocystis sp. PCC6803
-
Martin DD, Xu MQ, Evans TC Jr. 2001. Characterization of a naturally occurring trans-splicing intein from Synechocystis sp. PCC6803. Biochemistry 40:1393-402
-
(2001)
Biochemistry
, vol.40
, pp. 1393-1402
-
-
Martin, D.D.1
Xu, M.Q.2
Evans T.C., Jr.3
-
59
-
-
0033614484
-
Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: Facile production of protein building blocks for protein ligation
-
Mathys S, Evans TC, Chute IC, Wu H, Chong S, et al. 1999. Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: Facile production of protein building blocks for protein ligation. Gene 231:1-13
-
(1999)
Gene
, vol.231
, pp. 1-13
-
-
Mathys, S.1
Evans, T.C.2
Chute, I.C.3
Wu, H.4
Chong, S.5
-
60
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira A, Ochman H, Moran NA. 2001. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:589-96
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
61
-
-
0032190211
-
Characterization of two intein homing endonucleases encoded in the DNA polymerase gene of Pyrococcus kodakaraensis strain KOD1
-
Nishioka M, Fujiwara S, Takagi M, Imanaka T. 1998. Characterization of two intein homing endonucleases encoded in the DNA polymerase gene of Pyrococcus kodakaraensis strain KOD1. Nucleic Acids Res. 26:4409-12
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4409-4412
-
-
Nishioka, M.1
Fujiwara, S.2
Takagi, M.3
Imanaka, T.4
-
62
-
-
0034542621
-
Horizontal transfer of archaeal genes into the Deinococcaceae: Detection by molecular and computer-based approaches
-
Olendzenski L, Liu L, Zhaxybayeva O, Murphey R, Shin DG, Gogarten JP. 2000. Horizontal transfer of archaeal genes into the Deinococcaceae: Detection by molecular and computer-based approaches. J. Mol. Evol. 51:587-99
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 587-599
-
-
Olendzenski, L.1
Liu, L.2
Zhaxybayeva, O.3
Murphey, R.4
Shin, D.G.5
Gogarten, J.P.6
-
63
-
-
0033534179
-
NMR observation of selected segments in a larger protein: Central-segment isotope labeling through intein-mediated ligation
-
Otomo T, Ito N, Kyogoku Y, Yamazaki T. 1999. NMR observation of selected segments in a larger protein: Central-segment isotope labeling through intein-mediated ligation. Biochemistry 38:16040-44
-
(1999)
Biochemistry
, vol.38
, pp. 16040-16044
-
-
Otomo, T.1
Ito, N.2
Kyogoku, Y.3
Yamazaki, T.4
-
64
-
-
0033038793
-
Improved segmental isotope labeling of proteins and application to a larger protein
-
Otomo T, Teruya K, Uegaki K, Yamazaki T, Kyogoku Y. 1999. Improved segmental isotope labeling of proteins and application to a larger protein. J. Biomol. NMR 14:105-14
-
(1999)
J. Biomol. NMR
, vol.14
, pp. 105-114
-
-
Otomo, T.1
Teruya, K.2
Uegaki, K.3
Yamazaki, T.4
Kyogoku, Y.5
-
65
-
-
0035356577
-
Split luciferase as an optical probe for detecting protein-protein interactions in mammalian cells based on protein splicing
-
Ozawa T, Kaihara A, Sato M, Tachihara K, Umezawa Y. 2001. Split luciferase as an optical probe for detecting protein-protein interactions in mammalian cells based on protein splicing. Anal. Chem. 73:2516-21
-
(2001)
Anal. Chem.
, vol.73
, pp. 2516-2521
-
-
Ozawa, T.1
Kaihara, A.2
Sato, M.3
Tachihara, K.4
Umezawa, Y.5
-
66
-
-
0034329620
-
A fluorescent indicator for detecting protein-protein interactions in vivo based on protein splicing
-
Ozawa T, Nogami S, Sato M, Ohya Y, Umezawa Y. 2000. A fluorescent indicator for detecting protein-protein interactions in vivo based on protein splicing. Anal. Chem. 72:5151-57
-
(2000)
Anal. Chem.
, vol.72
, pp. 5151-5157
-
-
Ozawa, T.1
Nogami, S.2
Sato, M.3
Ohya, Y.4
Umezawa, Y.5
-
67
-
-
0033782899
-
Protein splicing and related forms of protein autoprocessing
-
Paulus H. 2000. Protein splicing and related forms of protein autoprocessing. Annu. Rev. Biochem. 69:447-96
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 447-496
-
-
Paulus, H.1
-
68
-
-
0032894598
-
InBase, the New England biolabs intein database
-
Perler FB. 1999. InBase, the New England biolabs intein database. Nucleic Acids Res. 27:346-47
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 346-347
-
-
Perler, F.B.1
-
69
-
-
0033963173
-
InBase, the intein database
-
Perler FB. 2000. InBase, the intein database. Nucleic Acids Res. 28:344-45
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 344-345
-
-
Perler, F.B.1
-
70
-
-
0028214350
-
Protein splicing elements: Inteins and exteins - A definition of terms and recommended nomenclature
-
Perler FB, Davis EO, Dean GE, Gimble FS, Jack WE, et al. 1994. Protein splicing elements: Inteins and exteins - A definition of terms and recommended nomenclature. Nucleic Acids Res. 22:1125-27
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1125-1127
-
-
Perler, F.B.1
Davis, E.O.2
Dean, G.E.3
Gimble, F.S.4
Jack, W.E.5
-
73
-
-
0028607524
-
Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins
-
Pietrokovski S. 1994. Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins. Protein Sci. 3:2340-50
-
(1994)
Protein Sci.
, vol.3
, pp. 2340-2350
-
-
Pietrokovski, S.1
-
74
-
-
0030210936
-
A new intein in cyanobacteria and its significance for the spread of inteins
-
Pietrokovski S. 1996. A new intein in cyanobacteria and its significance for the spread of inteins. Trends Genet. 12:287-88
-
(1996)
Trends Genet.
, vol.12
, pp. 287-288
-
-
Pietrokovski, S.1
-
75
-
-
0032505062
-
Identification of a virus intein and a possible variation in the protein-splicing reaction
-
Pietrokovski S. 1998. Identification of a virus intein and a possible variation in the protein-splicing reaction. Curr. Biol. 8:R634-35
-
(1998)
Curr. Biol.
, vol.8
-
-
Pietrokovski, S.1
-
76
-
-
0031938897
-
Modular organization of inteins and C-terminal autocatalytic domains
-
Pietrokovski S. 1998. Modular organization of inteins and C-terminal autocatalytic domains. Protein Sci. 7:64-71
-
(1998)
Protein Sci.
, vol.7
, pp. 64-71
-
-
Pietrokovski, S.1
-
77
-
-
0035425040
-
Intein spread and extinction in evolution
-
Pietrokovski S. 2001. Intein spread and extinction in evolution. Trends Genet. 17:465-72
-
(2001)
Trends Genet.
, vol.17
, pp. 465-472
-
-
Pietrokovski, S.1
-
79
-
-
0033538004
-
Photocross-linking of the homing endonuclease PI-SceI to its recognition sequence
-
Pingoud V, Thole H, Christ F, Grindl W, Wende W, Pingoud A. 1999. Photocross-linking of the homing endonuclease PI-SceI to its recognition sequence. J. Biol. Chem. 274:10235-43
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 10235-10243
-
-
Pingoud, V.1
Thole, H.2
Christ, F.3
Grindl, W.4
Wende, W.5
Pingoud, A.6
-
80
-
-
0034595699
-
Structural insights into the protein splicing mechanism of PI-SceI
-
Poland BW, Xu MQ, Quiocho FA. 2000. Structural insights into the protein splicing mechanism of PI-SceI. J. Biol. Chem. 275:16408-13
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 16408-16413
-
-
Poland, B.W.1
Xu, M.Q.2
Quiocho, F.A.3
-
81
-
-
0029844192
-
Cholesterol modification of hedgehog signaling proteins in animal development
-
Porter JA, Young KE, Beachy PA. 1996. Cholesterol modification of hedgehog signaling proteins in animal development. Science 274:255-59
-
(1996)
Science
, vol.274
, pp. 255-259
-
-
Porter, J.A.1
Young, K.E.2
Beachy, P.A.3
-
82
-
-
51649139576
-
Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
-
Reith ME, Munholland J. 1995. Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol. Biol. Rep. 13:333-35
-
(1995)
Plant Mol. Biol. Rep.
, vol.13
, pp. 333-335
-
-
Reith, M.E.1
Munholland, J.2
-
83
-
-
0034736514
-
Evolution of the mitochondrial genetic system: An overview
-
Saccone C, Gissi C, Lanave C, Larizza A, Pesole G, Reyes A. 2000. Evolution of the mitochondrial genetic system: An overview. Gene 261:153-59
-
(2000)
Gene
, vol.261
, pp. 153-159
-
-
Saccone, C.1
Gissi, C.2
Lanave, C.3
Larizza, A.4
Pesole, G.5
Reyes, A.6
-
84
-
-
0034327410
-
The thy pol-2 intein of Thermococcus hydrothermalis is an isoschizomer of PI-TliI and PI-TfuII endonucleases
-
Saves I, Eleaume H, Dietrich J, Masson JM. 2000. The thy pol-2 intein of Thermococcus hydrothermalis is an isoschizomer of PI-TliI and PI-TfuII endonucleases. Nucleic Acids Res. 28:4391-96
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4391-4396
-
-
Saves, I.1
Eleaume, H.2
Dietrich, J.3
Masson, J.M.4
-
85
-
-
0034723160
-
Inteins of Thermococcus fumicolans DNA polymerase are endonucleases with distinct enzymatic behaviors
-
Saves I, Ozanne V, Dietrich J, Masson JM. 2000. Inteins of Thermococcus fumicolans DNA polymerase are endonucleases with distinct enzymatic behaviors. J. Biol. Chem. 275:2335-41
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2335-2341
-
-
Saves, I.1
Ozanne, V.2
Dietrich, J.3
Masson, J.M.4
-
86
-
-
0035504277
-
Identification of the first eubacterial endonuclease coded by an intein allele in the pps1 gene of mycobacteria
-
Saves I, Westrelin F, Daffe M, Masson JM. 2001. Identification of the first eubacterial endonuclease coded by an intein allele in the pps1 gene of mycobacteria. Nucleic Acids Res. 29:4310-18
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4310-4318
-
-
Saves, I.1
Westrelin, F.2
Daffe, M.3
Masson, J.M.4
-
87
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schaffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, et al. 2001. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res. 29:2994-3005
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2994-3005
-
-
Schaffer, A.A.1
Aravind, L.2
Madden, T.L.3
Shavirin, S.4
Spouge, J.L.5
-
88
-
-
0034865023
-
Structural requirements for the biosynthesis of backbone cyclic peptide libraries
-
Scott CP, Abel-Santos E, Jones AD, Benkovic SJ. 2001. Structural requirements for the biosynthesis of backbone cyclic peptide libraries. Chem. Biol. 8:801-15
-
(2001)
Chem. Biol.
, vol.8
, pp. 801-815
-
-
Scott, C.P.1
Abel-Santos, E.2
Jones, A.D.3
Benkovic, S.J.4
-
89
-
-
0033598747
-
Production of cyclic peptides and proteins in vivo
-
Scott CP, Abel-Santos E, Wall M, Wahnon DC, Benkovic SJ. 1999. Production of cyclic peptides and proteins in vivo. Proc. Natl. Acad. Sci. USA 96:13638-43
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13638-13643
-
-
Scott, C.P.1
Abel-Santos, E.2
Wall, M.3
Wahnon, D.C.4
Benkovic, S.J.5
-
90
-
-
3042813413
-
The intein of the Thermoplasma A-ATPase A subunit: Structure, evolution and expression in E. coli
-
Senejani AG, Hilario E, Gogarten JP. 2001. The intein of the Thermoplasma A-ATPase A subunit: Structure, evolution and expression in E. coli. BMC Biochem. 2:13
-
(2001)
BMC Biochem.
, vol.2
, pp. 13
-
-
Senejani, A.G.1
Hilario, E.2
Gogarten, J.P.3
-
91
-
-
0030800808
-
Protein splicing: Estimation of the rate of O-N and S-N acyl rearrangements, the last step of the splicing process
-
Shao Y, Paulus H. 1997. Protein splicing: Estimation of the rate of O-N and S-N acyl rearrangements, the last step of the splicing process. J. Pept. Res. 50:193-98
-
(1997)
J. Pept. Res.
, vol.50
, pp. 193-198
-
-
Shao, Y.1
Paulus, H.2
-
92
-
-
0023733049
-
A dominant trifluoperazine resistance gene from Saccharomyces cerevisiae has homology with FOF1 ATP synthase and confers calcium-sensitive growth
-
Shih CK, Wagner R, Feinstein S, Kanik-Ennulat C, Neff N. 1988. A dominant trifluoperazine resistance gene from Saccharomyces cerevisiae has homology with FOF1 ATP synthase and confers calcium-sensitive growth. Mol. Cell. Biol. 8:3094-103
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 3094-3103
-
-
Shih, C.K.1
Wagner, R.2
Feinstein, S.3
Kanik-Ennulat, C.4
Neff, N.5
-
93
-
-
0032579457
-
Molecular dissection of the Mycobacterium tuberculosis RecA intein: Design of a minimal intein and of a transsplicing system involving two intein fragments
-
Shingledecker K, Jiang SQ, Paulus H. 1998. Molecular dissection of the Mycobacterium tuberculosis RecA intein: Design of a minimal intein and of a transsplicing system involving two intein fragments. Gene 207:187-95
-
(1998)
Gene
, vol.207
, pp. 187-195
-
-
Shingledecker, K.1
Jiang, S.Q.2
Paulus, H.3
-
94
-
-
0033525669
-
Crystal structure of the thermostable archaeal intron-encoded endonuclease I-DmoI
-
Silva GH, Dalgaard JZ, Belfort M, Van Roey P. 1999. Crystal structure of the thermostable archaeal intron-encoded endonuclease I-DmoI. J. Mol. Biol. 286:1123-36
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1123-1136
-
-
Silva, G.H.1
Dalgaard, J.Z.2
Belfort, M.3
Van Roey, P.4
-
95
-
-
0032988320
-
Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein
-
Southworth MW, Amaya K, Evans TC, Xu MQ, Perler FB. 1999. Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein. Biotechniques 27:110-14, 116, 118-20
-
(1999)
Biotechniques
, vol.27
, pp. 110-114
-
-
Southworth, M.W.1
Amaya, K.2
Evans, T.C.3
Xu, M.Q.4
Perler, F.B.5
-
96
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
-
Strimmer K, von Haeseler A. 1996. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-69
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
97
-
-
0035292773
-
Protein trans-splicing to produce herbicide-resistant acetolactate synthase
-
Sun L, Ghosh I, Paulus H, Xu MQ. 2001. Protein trans-splicing to produce herbicide-resistant acetolactate synthase. Appl. Environ. Microbiol. 67:1025-29
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1025-1029
-
-
Sun, L.1
Ghosh, I.2
Paulus, H.3
Xu, M.Q.4
-
99
-
-
0030761813
-
The Mycobacterium xenopi GyrA protein splicing element: Characterization of a minimal intein
-
Telenti A, Southworth M, Alcaide F, Daugelat S, Jacobs WR Jr, Perler FB. 1997. The Mycobacterium xenopi GyrA protein splicing element: Characterization of a minimal intein. J. Bacteriol. 179:6378-82
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6378-6382
-
-
Telenti, A.1
Southworth, M.2
Alcaide, F.3
Daugelat, S.4
Jacobs W.R., Jr.5
Perler, F.B.6
-
100
-
-
0030855053
-
Evolutionarily conserved and functionally important residues in the I-CeuI homing endonuclease
-
Tunnel M, Otis C, Cote V, Lemieux C. 1997. Evolutionarily conserved and functionally important residues in the I-CeuI homing endonuclease. Nucleic Acids Res. 25:2610-19
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2610-2619
-
-
Tunnel, M.1
Otis, C.2
Cote, V.3
Lemieux, C.4
-
101
-
-
0033970706
-
The European small subunit ribosomal RNA database
-
Van de Peer Y, De Rijk P, Wuyts J, Winkelmans T, De Wachter R. 2000. The European small subunit ribosomal RNA database. Nucleic Acids Res. 28:175-76
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 175-176
-
-
Van de Peer, Y.1
De Rijk, P.2
Wuyts, J.3
Winkelmans, T.4
De Wachter, R.5
-
102
-
-
0031053310
-
Identification of a protein that binds to the HO endonuclease recognition sequence at the yeast mating type locus
-
Wang R, Jin Y, Norris D. 1997. Identification of a protein that binds to the HO endonuclease recognition sequence at the yeast mating type locus. Mol. Cell. Biol. 17:770-77
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 770-777
-
-
Wang, R.1
Jin, Y.2
Norris, D.3
-
103
-
-
0032832776
-
A genetic system yields self-cleaving inteins for bioseparations
-
Wood DW, Wu W, Belfort G, Derbyshire V, Belfort M. 1999. A genetic system yields self-cleaving inteins for bioseparations. Nat. Biotechnol. 17:889-92
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 889-892
-
-
Wood, D.W.1
Wu, W.2
Belfort, G.3
Derbyshire, V.4
Belfort, M.5
-
104
-
-
0032483013
-
Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803
-
Wu H, Hu Z, Liu XQ. 1998. Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803. Proc. Natl. Acad. Sci. USA 95:9226-31
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9226-9231
-
-
Wu, H.1
Hu, Z.2
Liu, X.Q.3
-
105
-
-
18144439565
-
Protein trans-splicing and functional mini-inteins of a cyanobacterial dnaB intein
-
Wu H, Xu MQ, Liu XQ. 1998. Protein trans-splicing and functional mini-inteins of a cyanobacterial dnaB intein. Biochim. Biophys. Acta 1387:422-32
-
(1998)
Biochim. Biophys. Acta
, vol.1387
, pp. 422-432
-
-
Wu, H.1
Xu, M.Q.2
Liu, X.Q.3
-
106
-
-
0029838842
-
The mechanism of protein splicing and its modulation by mutation
-
Xu MQ, Perler FB. 1996. The mechanism of protein splicing and its modulation by mutation. EMBO J. 15:5146-53
-
(1996)
EMBO J.
, vol.15
, pp. 5146-5153
-
-
Xu, M.Q.1
Perler, F.B.2
-
107
-
-
0035913755
-
Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins
-
Zhang A, Gonzalez SM, Cantor EJ, Chong S. 2001. Construction of a mini-intein fusion system to allow both direct monitoring of soluble protein expression and rapid purification of target proteins. Gene 275:241-52
-
(2001)
Gene
, vol.275
, pp. 241-252
-
-
Zhang, A.1
Gonzalez, S.M.2
Cantor, E.J.3
Chong, S.4
|