Influence of bulky polynuclear carcinogen lesions in a TATA promoter sequence on TATA binding protein - DNA complex formation

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5622-5632

  Rechkoblit, Olga ^a   Krzeminsky, Jacek ^b   Amin, Shantu ^b   Jernström, Bengt ^c   Louneva, Natalia ^a   Geacintov, Nicholas E ^a  

^a NEW YORK UNIVERSITY   (United States)

^b AMERICAN HEALTH FOUNDATION   (United States)

^c KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ASSAYS; CARCINOGENS; DNA SEQUENCES; GENES; OLIGOMERS; RNA; SYNTHESIS (CHEMICAL);

ELECTROPHORETIC MOBILITY SHIFT ASSAYS (EMSA);

PROTEINS;

CARCINOGEN; TATA BINDING PROTEIN;

ARTICLE; CANCER; CARCINOGENESIS; DNA PROTEIN COMPLEX; DNA SEQUENCE; HUMAN; PRIORITY JOURNAL; PROMOTER REGION; STEREOCHEMISTRY; TRANSCRIPTION INITIATION;

7,8-DIHYDRO-7,8-DIHYDROXYBENZO(A)PYRENE 9,10-OXIDE; CARCINOGENS; DEOXYADENOSINES; DNA ADDUCTS; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HUMANS; KINETICS; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; STEREOISOMERISM; TATA BOX; TATA-BOX BINDING PROTEIN; THERMODYNAMICS; TRANSCRIPTION FACTORS;

EID: 0035873657     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi002543r     Document Type: Article

References (66)

1. Phillips, D. H. (1983) Nature 303, 468-72.
2. Conney, A. H. (1982) Cancer Res. 42, 4875-917.
3. Kozack, R., Seo, K. Y., Jelinsky, S. A., and Loechler, E. L. (2000) Mutat. Res. 450, 41-59.
4. Fernandes, A., Liu, T., Amin, S., Geacintov, N. E., Grollman, A. P., and Moriya, M. (1998) Biochemistry 37, 10164-72.
5. Page, J. E., Zajc, B., Oh-hara, T., Lakshman, M. K., Sayer, J. M., Jerina, D. M., and Dipple, A. (1998) Biochemistry 37, 9127-37.
6. Choi, D. J., Roth, R. B., Liu, T. M., Geacintov, N. E., and Scicchitano, D. A. (1996) J. Mol. Biol. 264, 213-9.
7. Choi, D. J., Marino-Alessandri, D. J., Geacintov, N. E., and Scicchitano, D. A. (1994) Biochemistry 33, 780-7.
8. Custer, L., Zajc, B., Sayer, J. M., Cullinane, C., Phillips, D. R., Cheh, A. M., Jerina, D. M., Bohr, V. A., and Mazur, S. J. (1999) Biochemistry 38, 569-81.
9. Remington, K. M., Bennett, S. E., Harris, C. M., Harris, T. M.. and Bebenek, K. (1998) J. Biol. Chem. 273, 13170-6.
10. MacLeod, M. C., Powell, K. L., Kuzmin, V. A., Kolbanovskiy, A., and Geacintov, N. E. (1996) Mol. Carcinog. 16, 44-52.
11. MacLeod, M. C., Powell, K. L., and Tran, N. (1995) Carcinogenesis 16, 975-83.
12. Johnson, D. G., Coleman, A., Powell, K. L., and MacLeod, M. C. (1997) Mol. Carcinog. 20, 216-23.
13. Butler, A. P., Johnson, D. G., Kumar, A. P., Narayan, S., Wilson, S. H., and MacLeod, M. C. (1997) Carcinogenesis 18, 239-44.
14. Vichi, P., Coin, F., Renaud, J. P., Vermeulen, W., Hoeijmakers, J. H., Moras, D., and Egly, J. M. (1997) EMBO J. 16, 7444-56.
15. Coin, F., Frit, P., Viollet, B., Salles, B., and Egly, J. M. (1998) Mol. Cell. Biol. 18, 3907-14.
16. Zhai, X., Beckmann, H., Jantzen, H. M., and Essigmann, J. M. (1998) Biochemistry 37, 16307-15.
17. Chen, X. M., Gray, P. J., Cullinane, C., and Phillips, D. R. (1999) Chem. Biol. Interact. 118, 51-67.
18. Takahara, P. M., Frederick, C. A., and Lippard, S. J. (1996) J. Am. Chem. Soc. 118, 12309-21.
19. Li, G.-M., Wang, H., and Romano, L. J. (1996) J. Biol. Chem. 271, 24084-8.
20. Parvin, J. D., McCormick, R. J., Sharp, P. A., and Fisher, D. E. (1995) Nature 373, 724-7.
21. Grove, A., Galeone, A., Yu, E., Mayo, I. L., and Geiduschek, E. P. (1998) J. Mol. Biol. 282, 731-9.
22. Persson, A. E., Pontén, I., Cotgreave, I., and Jernström, B. (1996) Carcinogenesis 17, 1963-9.
23. Hernandez, N. (1993) Genes Dev. 7, 1291-1308.
24. Patikoglou, G., and Burley, S. K. (1997) Annu. Rev. Biophys. Biomol. Struct. 26, 289-325.
25. Andel, F., III, Ladurner, A. G., Inouye, C., Tjian, R., and Nogales, E. (1999) Science 286, 2153-2156.
26. Geiduschek, E. P., and Kassavetis, G. A. (1995) Curr. Opin. Cell Biol. 7, 344-51.
27. Hoopes, B. C., LeBlanc, J. F., and Hawley, D. K. (1992) J. Biol. Chem. 267, 11539-47.
28. Perez-Howard, G. M., Weil, P. A., and Beechem, J. M. (1995) Biochemistry 34, 8005-17.
29. Parkhurst, K. M., Brenowitz, M., and Parkhurst, L. J. (1996) Biochemistry 35, 7459-65.
30. Petri, V., Hsieh, M., Jamison, E., and Brenowitz, M. (1998) Biochemistry 37, 15842-9.
31. Coleman, R. A., and Pugh, B. F. (1995) J. Biol. Chem. 270, 13850-9.
32. Coleman, R. A., and Pugh, B. F. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 7221-6.
33. Jackson-Fisher, A. J., Burma, S., Portnoy, M., Schneeweis, L. A., Coleman, R. A., Mitra, M., Chitikila, C., and Pugh, B. F. (1999) Biochemistry 38, 11340-8.
34. Bucher, P. (1990) J. Mol. Biol. 212, 563-78.
35. Robins, M. J., and Basom, G. L. (1973) Can. J. Chem. 51, 3161.
36. Lakshman, M. K., Sayer, J. M., and Jerina, D. M. (1991) J. Am. Chem. Soc. 113, 6589-94.
37. Kim, S. J., Jajoo, H. K., Kim, H. Y., Zhou, L., Horton, P., Harris, C. M., Harris, T. M., and Stone, M. P. (1995) Bioorg. Med. Chem. 3, 811-22.
38. Lakshman, M. K., Sayer, J. M., Yagi, H., and Jerina, D. M. (1992) J. Org. Chem. 57, 4585-90.
39. Steinbrecher, T., Becker, A., Stezowski, J. J., Oesch, F., and Seidel, A. (1993) Tetrahedron. Lett. 34, 1773-4.
40. Laryea, A., Cosman, M., Lin, J. M., Liu, T., Agarwal, R., Smirnov, S., Amin, S., Harvey, R. G., Dipple, A., and Geacintov, N. E. (1995) Chem. Res. Toxicol. 8, 444-54.
41. Nikolov, D. B., Chen, H., Halay, E. D., Hoffman, A., Roeder, R. G., and Burley, S. K. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 4862-7.
42. Tan, J., Geacintov, N. E., and Broyde, S. (2000) J. Am. Chem. Soc. 122, 3021-2.
43. Wobbe, C. R., and Struhl, K. (1990) Mol. Cell. Biol. 10, 3859-67.
44. Zegar, I. S., Kim, S. J., Johansen, T. N., Horton, P. J., Harris, C. M., Harris, T. M., and Stone, M. P. (1996) Biochemistry 35, 6212-4.
45. Schurter, E. J., Yeh, H. J., Sayer, J. M., Lakshman, M. K., Yagi, H., Jerina, D. M., and Gorenstein, D. G. (1995) Biochemistry 34, 1364-75.
46. Chaturvedi, S., and Lakshman, M. K. (1996) Carcinogenesis 17, 2747-52.
47. Krzeminski, J., Ni, J., Zhuang, P., Luneva, N., Amin, S., and Geacintov, N. E. (1999) Polycycl. Aromat. Compd. 17, 1-10.
48. Geacintov, N. E., Cosman, M., Mao, B., Alfano, A., Ibanez, V., and Harvey, R. G. (1991) Carcinogenesis 12, 2099-108.
49. Le, P. T., Harris, C. M., Harris, T. M., and Stone, M. P. (2000) Chem. Res. Toxicol. 13, 63-71.
50. Coleman, R. A., Taggart, A. K., Benjamin, L. R., and Pugh, B. F. (1995) J. Biol. Chem. 270, 13842-9.
51. Starr, D. B., Hoopes, B. C., and Hawley, D. K. (1995) J. Mol. Biol. 250, 434-46.
52. Weideman, C. A., Netter, R. C., Benjamin, L. R., McAllister, J. J., Schmiedekamp, L. A., Coleman, R. A., and Pugh, B. F. (1997) J. Mol. Biol. 271, 61-75.
53. Cohen, S. M., Jamieson, E. R., and Lippard, S. J. (2000) Biochemistry 39, 8259-65.
54. Bernues, J., Carrera, P., and Azorin, F. (1996) Nucleic Acids Res. 24, 2950-8.
55. Hoopes, B. C., LeBlanc, J. F., and Hawley, D. K. (1998) J. Mol. Biol. 277, 1015-31.
56. Imbalzano, A. N., Zaret, K. S., and Kingston, R. E. (1994) J. Biol. Chem. 269, 8280-6.
57. Hahn, S., Buratowski, S., Sharp, P. A., and Guarente, L. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 5718-22.
58. Nikolov, D. B., Hu, S. H., Lin, J., Gasch, A., Hoffmann, A., Horikoshi, M., Chua, N. H., Roeder, R. G., and Burley, S. K. (1992) Nature 360, 40-6.
59. Burley, S. K. (1996) Philos. Trans. R. London B Biol. Sci. 29, 483-9.
60. Aboussekhra, A., and Thoma, F. (1999) EMBO J. 18, 433-43.
61. Voskoboinik, I., Persson, Å. E., and Jernström, B. (1999) Polycyclic Aromat. Compd. 17, 33-42.
62. Ohndorf, U. M., Rould, M. A., He, Q., Pabo, C. O., and Lippard, S. J. (1999) Nature 399, 708-12.
63. Schurter, E. J., Sayer, J. M., Oh-hara, T., Yeh, H. J., Yagi, H., Luxon, B. A., Jerina, D. M., and Gorenstein, D. G. (1995) Biochemistry 34, 9009-20.
64. Mao, B., Gu, Z., Gorin, A., Chen, J., Hingerty, B. E., Amin, S., Broyde, S., Geacintov, N. E., and Patel, D. J. (1999) Biochemistry 38, 10831-42.
65. Yeh, H. J., Sayer, J. M., Liu, X., Altieri, A. S., Byrd, R. A., Lakshman, M. K., Yagi, H., Schurter, E. J., Gorenstein, D. G., and Jerina, D. M. (1995) Biochemistry 34, 13570-81.
66. Geacintov, N. E., Cosman, M., Hingerty, B. E., Amin, S., Broyde, S., and Patel, D. J. (1997) Chem. Res. Toxicol. 10, 111-46.