Dynamic interplay of TFIIA, TBP and TATA DNA

Journal of Molecular Biology

Volumn 271, Issue 1, 1997, Pages 61-75

  Weideman, Christian A ^a   Netter, Robert C ^a   Benjamin, Lawrence R ^a   McAllister, John J ^a   Schmiedekamp, Lumelle A ^a   Coleman, Robert A ^a   Pugh, B Franklin ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Kinetics; Protein DNA interactions; TATA box; TBP; TFIIA

Indexed keywords

DNA; RECOMBINANT PROTEIN; RNA POLYMERASE II; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; CONTROLLED STUDY; ELECTROPHORETIC MOBILITY; ENZYME REGULATION; HALF LIFE TIME; HUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; TATA BOX;

ARCHAEA; EUKARYOTA;

EID: 0031559556     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1152     Document Type: Article

References (60)

1. Auble D. T., Hahn S. An ATP-dependent inhibitor of TBP binding to DNA. Genes Dev. 7:1993;844-856.
2. Bernstein R, DeJong J, Roeder R. G. Characterization of the highly conserved TFIIA small subunit from Drosophila melanogaster. J. Biol. Chem. 269:1994;24361-24366.
3. Buratowski S., Zhou H. Transcription factor IID mutants defective for interaction with transcription factor IIA. Science. 255:1992;1130-1132.
4. Buratowski S., Hahn S., Guarente L, Sharp P. A. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell. 56:1989;549-561.
5. Chasman D. I., Flaherty K. M., Sharp P. A., Kornberg R. D. Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl Acad. Sci. USA. 90:1993;8174-8178.
6. Coleman R. A., Pugh B. F. Evidence for functional binding and stable sliding of the TATA binding protein on non-specific DNA. J. Biol. Chem. 270:1995;13850-13859.
7. Coleman R. A., Pugh B. F. Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding. Proc. Natl Acad. Sci. USA. 00:1997;in the press-00.
8. Coleman R. A., Taggart A. K., Benjamin L. R., Pugh B. F. Dimerization of the TATA binding protein. J. Biol. Chem. 270:1995;13842-13849.
9. Colgan J., Manley J. L. TFIID can be rate limiting in vivo for TATA-containing, but not TATA-lacking, RNA polymerase II promoters. Genes Dev. 6:1992;304-315.
10. Cortes P., Flores O., Reinberg D. Factors involved in specific transcription by mam-malian RNA polymerase II: purification and analysis of transcription factor IIA and identification of transcription factor IIJ. Mol. Cell. Biol. 12:1992;413-421.
11. Coulombe B., Li J., Greenblatt J. Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter. J. Biol. Chem. 269:1994;19962-19967.
12. DeJong J., Roeder R. G. A single cDNA, hTFIIA/alpha, encodes both the p35 and p19 subunits of human TFIIA. Genes Dev. 7:1993;2220-2234.
13. Geiger J. H., Hahn S., Lee S., Sigler P. B. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science. 272:1996;830-836.
14. Goodrich J. A., Tjian R. TBP-TAF complexes: selectivity factors for eukaryotic tran-scription. Curr. Opin. Cell Biol. 6:1994;403-409.
15. Hahn S., Buratowski S., Sharp P. A., Guarente L. Identification of a yeast protein homologous in function to the mammalian general transcription factor, TFIIA. EMBO J. 8:1989;3379-3382.
16. Hernandez N. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1993;1291-1308.
17. Hoopes B. C., LeBlanc J. F., Hawley D. K. Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J. Biol. Chem. 267:1992;11539-11547.
18. Imbalzano A. N., Zaret K. S., Kingston R. E. Transcription factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA. J. Biol. Chem. 269:1994;8280-8286.
19. Inostroza J. A., Mermelstein F. H., Ha I., Lane W. S., Reinberg D. Dr1, a TATA-binding protein-associated phosphoprotein and inhibitor of class II gene transcription. Cell. 70:1992;477-489.
20. Kang J. J., Auble D. T., Ranish J. A., Hahn S. Analysis of the yeast transcription factor TFIIA: distinct functional regions and a polymerase II-specific role in basal and activated transcription. Mol. Cell. Biol. 15:1995;1234-1243.
21. Kim J. L., Burley S. K. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature Struct. Biol. 1:1994;638-653.
22. Kim J. L., Nikolov D. B., Burley S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993a;520-527.
23. Kim Y., Geiger J. H., Hahn S., Sigler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993b;512-520.
24. Kim T. K., Zhao Y., Ge H., Bernstein R., Roeder R. G. TATA-binding protein residues implicated in a functional interplay between negative cofactor NC2 (Dr1) and eneral factors TFIIA and TFIIB. J. Biol. Chem. 270:1995;10976-10981.
25. Klein C., Struhl K. Increased recruitment of TATA-binding protein to the promoter by transcriptional activation domains in vivo. Science. 266:1994;280-282.
26. Kuddus R., Schmidt M. C. Effect of the non-conserved N-terminus on the DNA binding activity of the yeast TATA binding protein. Nucl. Acids Res. 21:1993;1789-1796.
27. Lagrange T., Kim T. K., Orphanides G., Ebright Y. W., Ebright R. H., Reinberg D. High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA pho-tocrosslinking: Organization of the human TBP-TFIIA-TFIIB-DNA quaternary complex. Proc. Natl Acad. Sci. USA. 93:1996;10620-10625.
28. Langer D., Hain J., Thuriaux P., Zillig W. Transcription in archaea: similarity to that in eucarya. Proc. Natl Acad. Sci. USA. 92:1995;5768-5772.
29. Lee D. K., Horikoshi M., Roeder R. G. Interaction of TFIID in the minor groove of the TATA element. Cell. 67:1991;1241-1250.
30. Lee D. K., DeJong J., Hashimoto S., Horikoshi M., Roeder R. G. TFIIA induces conformational changes in TFIID via interactions with the basic repeat. Mol. Cell. Biol. 12:1992;5189-5196.
31. Lieberman P. Identification of functional targets of the Zta transcriptional activator by formation of stable preinitiation complex intermediates. Mol. Cell. Biol. 14:1994;8365-8375.
32. Lieberman P. M., Berk A. J. A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA - promoter DNA complex formation. Genes Dev. 8:1994;995-1006.
33. Ma D., Watanabe H., Mermelstein F., Admon A., Oguri K., Sun X., Wada T., Imai T., Shiroya T., Reinberg D., et al. Isolation of a cDNA encoding the largest subunit of TFIIA reveals functions important for activated transcription. Genes Dev. 7:1993;2246-2257.
34. Ma D. M., Olave I., Merino A., Reinberg D. Separation of the transcriptional coactivator and antirepression functions of transcription factor IIA. Proc. Natl Acad. Sci. USA. 93:1996;6583-6588.
35. Meisterernst M., Roeder R. G. Family of proteins that interact with TFIID and regulate promoter activity. Cell. 67:1991;557-567.
36. Merino A., Madden K. R., Lane W. S., Champoux J. J., Reinberg D. DNA topoisomerase I is involved in both repression and activation of transcription. Nature. 365:1993;227-232.
37. Nikolov D. B., Burley S. K. 2.1 A resolution refined structure of a TATA box-binding protein (TBP). Nature Struct. Biol. 1:1994;621-637.
38. Nikolov D. B., Hu S. H., Lin J., Gasch A., Hoffmann A., Horikoshi M., Chua N. H., Roeder R. G., Burley S. K. Crystal structure of TFIID TATA-box binding protein. Nature. 360:1992;40-46.
39. Nikolov D. B., Chen H., Halay E. D., Hoffmann A., Roeder R. G., Burley S. K. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc. Natl Acad. Sci. USA. 93:1996;4862-4867.
40. Ozer J., Moore P. A., Bolden A. H., Lee A., Rosen C. A., Lieberman P. M. Molecular cloning of the small (gamma) subunit of human TFIIA reveals functions critical for activated transcription. Genes Dev. 8:1994;2324-2335.
41. Pugh B. F. Purification of the human TATA-binding protein, TBP. In Vitro. 1995;Humana Press, Inc. Totowa.
42. Pugh B. F. Mechanisms of transcription complex assembly. Curr. Opin. Cell Biol. 8:1996;303-311.
43. Pugh B. F., Tjian R. Mechanism of transcriptional activation by Sp1: evidence for coactivators. Cell. 61:1990;1187-1197.
44. Pugh B. F., Tjian R. Transcription from a TATA-less promoter requires a multisubunit TFIID complex. Genes Dev. 5:1991;1935-1945.
45. Ranish J. A., Hahn S. The yeast general transcription factor TFIIA is composed of two polypeptide subunits. J. Biol. Chem. 266:1991;19320-19327.
46. Ranish J. A., Lane W. S., Hahn S. Isolation of two genes that encode subunits of the yeast transcription factor IIA. Science. 255:1992;1127-1129.
47. Reinberg D., Horikoshi M., Roeder R. G. Factors involved in specific transcription in mammalian RNA polymerase II. Functional analysis of initiation factors IIA and IID and identification of a new factor operating at sequences downstream of the initiation site. J. Biol. Chem. 262:1987;3322-3330.
48. Roy A. L., Malik S., Meisterernst M., Roeder R. G. An alternative pathway for transcription initiation involving TFII-I. Nature. 365:1993;355-359.
49. Starr D. B., Hawley D. K. TFIID binds in the minor groove of the TATA box. Cell. 67:1991;1231-1240.
50. Sun X., Ma D., Sheldon M., Yeung K., Reinberg D. Reconstitution of human TFIIA activity from recombinant polypeptides: a role in TFIID-mediated transcription. Genes Dev. 8:1994;2336-2348.
51. Taggart A. K. P., Pugh B. F. Dimerization of TFIID when not bound to DNA. Science. 272:1996;1331-1333.
52. Taggart A. K., Fisher T. S., Pugh B. F. The TATA-binding protein and associated factors are components of pol III transcription factor TFIIIB. Cell. 71:1992;1015-1028.
53. Tan S., Hunziker Y., Sargent D. F., Richmond T. J. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature. 381:1996;127-151.
54. Tang H., Sun X., Reinberg D., Ebright R. H. Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex. Proc. Natl Acad. Sci. USA. 93:1996;1119-1124.
55. Usuda Y., Kubota A., Berk A. J., Handa H. Affinity purification of transcription factor IIA from HeLa cell nuclear extracts. EMBO J. 10:1991;2305-2310.
56. Wiley S. R., Kraus R. J., Mertz J. E. Functional binding of the "TATA" box binding component of transcription factor TFIID to the -30 region of TATA-less promoters. Proc. Natl Acad. Sci. USA. 89:1992;5814-5818.
57. Wong I., Lohman T. M. A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions. Proc. Natl Acad. Sci. USA. 90:1993;5428-5432.
58. Yokomori K., Admon A., Goodrich J. A., Chen J. L., Tjian R. Drosophila TFIIA-L is processed into two subunits that are associated with the TBP/TAF complex. Genes Dev. 7:1993;2235-2245.
59. Yokomori K., Zeidler M. P., Chen J. L., Verrijzer C. P., Mlodzik M., Tjian R. Drosophila TFIIA directs cooperative DNA binding with TBP and mediates transcriptional activation. Genes Dev. 8:1994;2313-2323.
60. Zenzie-Gregory B., Khachi A., Garraway I. P., Smale S. T. Mechanism of initiator-mediated transcription: evidence for a functional interaction between the TATA-binding protein and DNA in the absence of a specific recognition sequence. Mol. Cell. Biol. 13:1993;3841-3849.