Cisplatin- and UV-damaged DNA lure the basal transcription factor TFIID/TBP

EMBO Journal

Volumn 16, Issue 24, 1997, Pages 7444-7456

  Vichi, Paul ^a,c   Coin, Frédéric ^a   Renaud, Jean Paul ^a   Vermeulen, Wim ^b   Hoeijmakers, J H J ^b   Moras, Dino ^a   Egly, Jean Marc ^a  

^a INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^b ERASMUS MEDICAL CENTER   (Netherlands)

^c UNIVERSITY OF VERMONT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHICKEN OVALBUMIN UPSTREAM PROMOTER TRANSCRIPTION FACTOR; CISPLATIN; DNA; RNA; TATA BINDING PROTEIN;

ARTICLE; COMPUTER ANALYSIS; CONTROLLED STUDY; DNA DAMAGE; DNA STRUCTURE; FIBROBLAST; HUMAN; HUMAN CELL; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; RNA SYNTHESIS; TATA BOX; TRANSCRIPTION REGULATION; ULTRAVIOLET RADIATION;

CISPLATIN; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; DNA; DNA DAMAGE; HELA CELLS; HUMANS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; PROTEIN CONFORMATION; TATA BOX; TRANSCRIPTION FACTOR TFIID; TRANSCRIPTION FACTORS, TFII; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

EID: 0031463309     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/16.24.7444     Document Type: Article

References (39)

1. Aboussekhra, A.M. et al. (1995) Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell, 80, 859-868.
2. Arndt, K.M., Ricupero-Hovasse, S. and Winston, F. (1995) TBP mutants detective in activated transcription in vivo. EMBO J., 14, 1490-1497.
3. Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T. and Tasumi, M. (1977) The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol., 112, 535-542.
4. Bohr, V.A., Smith, C.A., Okumoto, D.S. and Hanawalt, P.C. (1985) DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell, 40, 359-369.
5. Buratowski, S., Hahn, S., Guarente, L. and Sharp, P.A. (1989) Five intermediate complexes in transcription initiation by RNA polymerase II. Cell, 56, 549-561.
6. Calsou, P. and Salles, B. (1994) Properties of damage-dependent DNA incision by nucleotide excision repair in human cell-free extracts. Nucleic Acids Res., 22, 4937-4942.
7. Chasman, D.I., Flaherty, K.M., Sharp, P.A. and Kornberg, R.D. (1993) Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl Acad. Sci. USA, 90, 8174-8178.
8. Colgan, J. and Manley, L. (1992) TFIID can be rate limiting in vivo for TATA-containing, but not TATA-lacking, RNA polymerase II promoters. Genes Dev., 6(2), 304-315.
9. Davison, B.L., Egly, J.-M., Mulvihill, E.R. and Chambon, P. (1983) Formation of stable preinitiation complexes between eukaryotic class B transcription factors and promoter sequences. Nature, 301, 680-686.
10. Donahue, B.A., Yin, S., Taylor, J.S., Reines, D. and Hanawalt, P.C. (1994) Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template. Proc. Natl Acad. Sci. USA, 91, 8502-8506.
11. Drew, H.R., Wing, R.M., Takano, T., Broka, C., Tanaka, S., Ikatura, K. and Dickerson, R.E. (1981) Structure of a B-DNA dodecamer: conformation and dynamics. Proc. Natl Acad. Sci. USA, 78, 2179-2183.
12. Evans, S.V. (1993) SETOR: hardware lighted three-dimensional solid model representations of macromolecules. J. Mol. Graphics, 11, 134-138.
13. Gérard, M., Fischer, L., Moncollin, V., Chipoulet, J.-M., Chambon, P. and Egly, J.-M. (1991) Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2. J. Biol. Chem., 266, 20940-20945.
14. Hansson, J., and Wood, R.D. (1989) Repair synthesis by human cell extracts in DNA damaged by cis-and trans-diammine dichloro platinum(II). Nucleic Acids Res., 17, 8073-8091.
15. Hoeijmakers, J.H.J., Egly, J.-M. and Vermeulen, W. (1996) TFIIH: a key component in multiple DNA transactions. Curr. Opin. Genet. Dev., 6, 26-33.
16. Humberts, S., van Vuuren, H., Lutz, Y., Hoeijmakers, J.H.J., Egly, J.-M. and Moncollin, V. (1994) p44 and p34 subunits of the BTF2/TFIIH transcription factor have homologies with SSL1, a yeast protein involved in DNA repair. EMBO J., 13, 2393-2398.
17. Iyer, N., Reagan, M.S., Wu., K.-J., Canagarajah, B. and Friedberg, E.C. (1996) Interactions involving the human RNA polymerase II transcription:nucleotide excision repair complex TFIIH, the nucleotide excision repair protein XPG, and Cockayne syndrome group B (CSB) protein. Biochemistry, 35, 2157-2167.
18. Jones, C.J. and Wood, R.D. (1993) Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA. Biochemistry, 32, 12096-12104.
19. Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr., A47, 110-119.
20. Juo, Z.S., Chiu, T.K., Leiberman, P.M., Baikalov, I., Berk, A.J. and Dickerson, R.E. (1996) How proteins recognize the TATA box. J. Mol. Biol., 261, 239-254.
21. Kim, J.L., Nikolov, D.B. and Burley, S.K. (1993) Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature, 365, 520-527.
22. Kim, Y., Geiger, J.H., Hahn, S. and Sigler, P.B. (1993) Crystal structure of a yeast TBP/TATA-box complex. Nature, 365, 512-520.
23. Leadon, S.A. and Lawrence, D.A. (1991) Strand-selective repair of DNA damage in the yeast GAL7 gene requires RNA polymerase II. J. Biol. Chem., 267, 23175-23182.
24. Lee, M. and Struhl, K. (1995) Mutations on the DNA-binding surface of TATA-binding protein can specifically impair the response to acidic activators in vivo. Mol. Cell. Biol., 15, 5461-5469.
25. Mayne, L.V. and Lehmann, A.R. (1982) Failure of RNA synthesis to recover after UV irradiation: an early defect in cells from individuals with Cockayne's syndrome and xeroderma pigmentosum. Cancer Res., 42, 1473-1478.
26. Mellon, I., Spivak, G. and Hanawalt, P.C. (1987) Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell, 51, 241-249.
27. Moggs, J.G., Yarema, K.J., Essigmann, J.M. and Wood, R.D. (1996) Analysis of incision sites produced by human cell extracts and purified proteins during nucleotide excision repair of a 1,3-intrastrand d(GpTpG)-cisplatin adduct. J. Biol. Chem., 271, 7177-7186.
28. Nakajima, N., Horikoshi, M. and Roeder, R.G. (1988) Factors involved in specific transcription by mammalian RNA polymerase II: purification, genetic specificity, and TATA box-promoter interactions of TFIID. Mol. Cell. Biol., 8, 4028-4040.
29. Nicholls, A. (1993) GRASP: Graphical Representation and Analysis of Surface Properties. Columbia University, New York.
30. Nocentini, S., Coin, F., Saijo, M., Tanaka, Y. and Egly, J.-M. (1997) DNA damage recognition by XPA protein promotes efficient recruitment of TFIIH. J. Biol. Chem., 272, 22991-22992.
31. Park, C.H., Mu, D., Reardon, J.T. and Sancar, A. (1995) The general transcription-repair factor TFIIH is recruited to the excision repair complex by the XPA protein independent of the TFIIE transcription factor. J. Biol. Chem., 270, 4896-4902.
32. Rossignol, M., Kolb-Cheynel, I. and Egly, J.-M. (1997) Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH. EMBO J., 16, 1628-1637.
33. Svejstrup, J.C., Vichi, P. and Egly, J.-M. (1996) The multiple roles of transcription/repair factor TFIIH. Trends Biochem. Sci., 21, 346-350.
34. Sweder, K.S. and Hanawalt, P.C. (1992) Preferential repair of cyclobutane pyrimidine dimer in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl Acad. Sci. USA, 89, 10696-10700.
35. Takahara, P.M., Rosenzweig, A.C., Frederick, C.A. and Lippard, S.J. (1995) Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin. Nature, 377, 649-652.
36. Treiber, D.K., Zhai, X., Jantzen, H.-M. and Essigman, J.M. (1994) Cisplatin - DNA adducts are molecular decoys for the ribosomal RNA transcription factor hUBF (human upstream binding factor). Proc. Natl Acad. Sci. USA, 91, 5672-5676.
37. Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E. and Morikawa, K. (1995) Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell, 83, 773-782.
38. Vermeulen, W. et al. (1994) Three unusual repair deficiencies associated with transcription factor BTF2 (TFIIH). Evidence for the existence of a transcription syndrome. Cold Spring Harbor Symp. Quant. Biol., 59, 317-329.
39. Zamble, D.B. and Lippard, S.J. (1995) Cisplatin and DNA repair in cancer chemotherapy. Trends Biochem. Sci., 20, 435-139.