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Journal of the American Chemical Society

Volumn 122, Issue 50, 2000, Pages 12422-12434

Use of oligodeoxyribonucleotides with conformationally constrained abasic sugar targets to probe the mechanism of base flipping by hhaI DNA (cytosine C5)-methyltransferase

(7) Wang, P a Brank, A S b Banavali, N K c Nicklaus, M C a Marquez, V E a Christman, J K b Mackerell, Jr c

a NATIONAL CANCER INSTITUTE (United States)

b UNIVERSITY OF NEBRASKA MEDICAL CENTER (United States)

c UNIVERSITY OF MARYLAND SCHOOL OF PHARMACY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA (CYTOSINE 5) METHYLTRANSFERASE; DOUBLE STRANDED DNA; FLUCYTOSINE; OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; BINDING AFFINITY; CATALYSIS; ENZYME STRUCTURE; MOLECULAR DYNAMICS; PROTEIN CONFORMATION; PROTEIN DNA INTERACTION; X RAY CRYSTALLOGRAPHY;

EID: 0034694685 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja001989s Document Type: Article

Times cited : (54)

References (67)

1
- 0028010888
- (1994) Cell , vol.76 , pp. 357-369
- Klimasauskas, S.¹ Kumar, S.² Roberts, R.J.³ Cheng, X.⁴

2
- 0029068629
- (1995) Cell , vol.82 , pp. 143-153
- Reinisch, K.M.¹ Chen, L.² Verdine, G.L.³ Lipscomb, W.N.⁴

3
- 0032538337
- (1998) Cell , vol.95 , pp. 249-258
- Lau, A.Y.¹ Scharer, O.D.² Samson, L.³ Verdine, G.L.⁴ Lipscomb, W.N.⁵

4
- 0006538770
- (1998) Cell , vol.95 , pp. 773-782
- Vassylyev, D.G.¹ Kashiwagi, T.² Mikani, Y.³ Ariyoshi, M.⁴ Iwai, S.⁵ Ohtsuka, E.⁶ Morikawa, K.⁷

5
- 0028959237
- (1995) Nature , vol.373 , pp. 487-493
- Savva, R.¹ McAuley-Hecht, K.² Brown, T.³ Pearl, L.⁴

6
- 0029904839
- (1996) Nature , vol.384 , pp. 87-92
- Slupphaug, G.¹ Mol, C.D.² Kavli, B.³ Arvai, A.S.⁴ Krokan, H.E.⁵ Tainer, J.A.⁶

7
- 0032498302
- (1998) Cell , vol.92 , pp. 117-129
- Barrett, T.E.¹ Savva, R.² Panayotou, G.³ Barlow, T.⁴ Brown, T.⁵ Jiricny, J.⁶ Pearl, L.H.⁷

8
- 0031662695
- (1998) Annu. Rev. Biochem. , vol.67 , pp. 181-198
- Roberts, R.J.¹ Cheng, X.²

9
- 0242444679
- (1998) EMBO J. , vol.17 , pp. 317-324
- Klimasauskas, S.¹ Szyperski, T.² Serva, S.³ Wuthrich, K.⁴

10
- 0028990179
- (1995) Nucleic Acids Res. , vol.23 , pp. 1388-1395
- Klimasauskas, S.¹ Roberts, R.J.²

11
- 0031667109
- (1998) Nat. Struct. Biol. , vol.5 , pp. 872-877
- O'Gara, M.¹ Horton, J.R.² Roberts, R.J.³ Cheng, X.⁴

12
- 0015511563
- (1972) J. Am. Chem. Soc. , vol.94 , pp. 8205-8212
- Altona, C.¹ Sundaralingam, M.²

13
- 0003458038
- Springer-Verlag: New York
- (1984) Principles of Nucleic Acid Structure
- Saenger, W.¹

14
- 0000408963
- (1996) Pure Appl. Chem. , vol.68 , pp. 2137-2144
- Plavec, J.¹ Thibadeau, C.² Chattopadhyaya, J.³

15
- 0027383216
- (1993) Tetrahedron Lett. , vol.34 , pp. 6233
- Rodriguez, J.B.¹ Marquez, V.E.² Nicklaus, M.C.³ Barchi J.J., Jr.⁴

16
- 0028004592
- (1994) J. Med. Chem. , vol.37 , pp. 3389-3399
- Rodriguez, J.B.¹ Marquez, V.E.² Nicklaus, M.C.H.M.³ Barchi J.J., Jr.⁴

17
- 0029044137
- (1995) J. Chem. Soc., Chem. Commun. , pp. 1345
- Ezzitouni, A.¹ Barchi J.J., Jr.² Marquez, V.E.³

18
- 0000855901
- (1995) Heterocycles , vol.41 , pp. 2651
- Jeong, L.S.¹ Marquez, V.E.² Yuan, C.-S.³ Borchardt, R.T.⁴

19
- 0029923673
- (1996) Nucleosides Nucleotides , vol.15 , pp. 235
- Siddiqui, M.A.¹ Ford H., Jr.² George, C.³ Marquez, V.E.⁴

20
- 0029865955
- (1996) Tetrahedron Lett. , vol.37 , pp. 2353
- Jeong, L.S.¹ Marquez, V.E.²

21
- 33748590516
- (1997) J. Chem. Soc., Perkin Trans. , vol.1 , pp. 1073
- Ezzitouni, A.¹ Marquez, V.E.²

22
- 0030749499
- (1997) J. Org. Chem. , vol.62 , pp. 4870
- Ezzitouni, A.¹ Russ, P.² Marquez, V.E.³

23
- 0030782754
- (1997) Nucleosides Nucleotides , vol.16 , pp. 1431-1434
- Marquez, V.E.¹ Ezzitouni, A.² Siddiqui, M.A.³ Russ, P.⁴ Ikeda, H.⁵ George, C.⁶

24
- 0032054586
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 2780-2789
- Marquez, V.E.¹ Ezzitouni, A.² Russ, P.³ Siddiqui, M.A.⁴ Ford H., Jr.⁵ Feldman, R.J.⁶ Mitsuya, H.⁷ George, C.⁸ Barchi J.J., Jr.⁹

25
- 0031728960
- (1998) Nucleosides Nucleotides , vol.17 , pp. 1881-1884
- Marquez, V.E.¹ Ezzitouni, A.² Russ, P.³ Siddiqui, M.A.⁴ Ford, J.H.⁵ Feldman, R.J.⁶ Mitsuya, H.⁷ George, C.⁸ Barchi, J.J.J.⁹

26
- 0000264435
- (1998) J. Med. Chem. , vol.41 , pp. 2572-2578
- Jeong, L.S.¹ Buenger, G.² McCormack, J.J.³ Cooney, D.A.⁴ Hao, Z.⁵ Marquez, V.E.⁶

27
- 0031902333
- (1998) J. Org. Chem. , vol.63 , pp. 5447-5462
- Bekiroglu, S.¹ Thibadeau, C.² Kumar, A.³ Matsuda, A.⁴ Marquez, V.E.⁵ Chattopadhyaya, J.⁶

28
- 0001257247
- (1999) J. Org. Chem. , vol.64 , pp. 4733-4741
- Moon, H.R.¹ Kim, H.O.² Chun, M.W.³ Jeong, L.S.⁴ Marquez, V.E.⁵

29
- 0032989645
- (1999) Nucleosides Nucleotides , vol.18 , pp. 521-530
- Marquez, V.E.¹ Russ, P.² Alonso, R.³ Siddiqui, M.A.⁴ Shin, K.J.⁵ George, C.⁶ Nicklaus, M.⁷ Dai, F.⁸ Ford, J.H.⁹

30
- 0034624785
- (2000) J. Med. Chem. , vol.43 , pp. 829-842
- Nandanan, E.¹ Jang, S.-Y.² Moro, S.³ Kim, H.⁴ Siddiqui, M.A.⁵ Russ, P.⁶ Marquez, V.E.⁷ Busson, R.⁸ Herdewjin, P.⁹ Harden, T.K.¹⁰ Boyer, J.L.¹¹ Jacobson, K.A.¹²

31
- 0033403349
- (1999) Helv. Chim. Acta , vol.82 , pp. 2119-2129
- Marquez, V.E.¹ Russ, P.² Alonso, R.³ Siddiqui, M.A.⁴ Hernandez, S.⁵ George, C.⁶ Nicklaus, M.C.⁷ Dai, F.⁸ Ford, J.H.⁹

32
- 0029127302
- (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 7347-7351
- Christman, J.K.¹ Sheikhnejad, G.² Marasco, C.J.³ Sufrin, J.R.⁴

33
- 0026698853
- (1992) Biochemistry , vol.31 , pp. 8648-8653
- Kumar, S.¹ Cheng, X.² Pflugrath, J.W.³ Roberts, R.J.⁴

36
- 0348244547
- (2000) J. Comput. Chem. , vol.21 , pp. 86-104
- Foloppe, N.¹ MacKerell A.D., Jr.²

37
- 0001549017
- (1999) J. Phys. Chem. B , vol.103 , pp. 10955-10964
- Foloppe, N.¹ MacKerell A.D., Jr.²

38
- 0000335508
- (1998) J. Phys. Chem. B , vol.102 , pp. 6669-6678
- Foloppe, N.¹ MacKerell A.D., Jr.²

39
- 84986512474
- (1983) J. Comput. Chem. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.J.⁶

40
- 0000224283
- Schleyer, P. v. R. Allinger, N. L. Clark, T. Gasteiger, J. Kollman, P. A. Schaefer, H. F., III Schreiner, P. R., Eds. John Wiley & Sons: Chichester
- (1998) CHARMM: The Energy Function and Its Paramerization with an Overview of the Program , vol.1 , pp. 271-277
- MacKerell A.D., Jr.¹ Brooks, B.² Brooks III, C.L.³ Nilsson, L.⁴ Roux, B.⁵ Won, Y.⁶ Karplus, M.⁷

41
- 0032522139
- (1998) Nucleic Acids Res. , vol.26 , pp. 1906-1926
- Dickerson, R.E.¹

42
- 0000214231
- (2000) J. Comput. Chem. , vol.21 , pp. 105-120
- MacKerell A.D., Jr.¹ Banavali, N.²

44
- 0004016501
- (1983) J. Chem. Phys. , vol.79 , pp. 926-935
- Jorgensen, W.L.¹ Chandrasekhar, J.² Madura, J.D.³ Impey, R.W.⁴ Klein, M.L.⁵

45
- 0003836380
- Harvard University: Cambridge, MA
- (1985) Theoretical Studies of Hydrogen Bonding
- Reiher III, W.E.¹

46
- 0001655657
- (1994) J. Chem. Phys. , vol.100 , pp. 9050-9063
- Beglov, D.¹ Roux, B.²

47
- 0006597986
- manuscript in preparation
- Banavali, N.K.¹ MacKerell A.D., Jr.²

48
- 0015749250
- (1973) J. Mol. Biol. , vol.81 , pp. 93-105
- Arnott, S.¹ Hukins, D.W.L.²

49
- 0003639599
- Harvard University: Cambridge, MA
- (1992) CRYSTAL: Program for Crystal Calculations in CHARMM
- Field, M.J.¹ Karplus, M.²

50
- 36449007836
- (1995) J. Chem. Phys. , vol.103 , pp. 4613-4621
- Feller, S.E.¹ Zhang, Y.² Pastor, R.W.³ Brooks, R.W.⁴

51
- 33646940952
- (1977) J. Comput. Phys. , vol.23 , pp. 327-341
- Ryckaert, J.P.¹ Ciccotti, G.² Berendsen, H.J.C.³

52
- 33846823909
- (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
- Darden, T.A.¹ York, D.² Pedersen, L.G.³

53
- 34547809547
- (1984) J. Chem. Phys. , vol.81 , pp. 511-519
- Nosé, S.¹

54
- 0001538909
- (1985) Phy. Rev. , vol.31 A , pp. 1695
- Hoover, W.G.¹

55
- 84986534166
- (1994) J. Comput. Chem. , vol.15 , pp. 667-683
- Steinbach, P.J.¹ Brooks, B.R.²

56
- 0026869597
- (1992) Biopolymers , vol.32 , pp. 523
- Loncharich, R.J.¹ Brooks, B.R.² Pastor, R.W.³

57
- 0034234593
- (2000) Nucleic Acids Res. , vol.28 , pp. 2613-2626
- Barsky, D.¹ Foloppe, N.² Ahmadia, S.³ Wilson III, D.M.⁴ MacKerell A.D., Jr.⁵

58
- 0028937063
- (1995) Nucleic Acids Res. , vol.23 , pp. 620-627
- Mi, S.¹ Alsono, D.² Roberts, R.J.³

59
- 0023256126
- (1987) Nature , vol.328 , pp. 89-92
- Guéron, M.¹ Kochoyan, M.² Leroy, J.-L.³

60
- 0026737976
- (1992) Biochemistry , vol.31 , pp. 8421-8428
- Moe, J.G.¹ Russu, I.M.²

61
- 0030572656
- (1996) J. Mol. Biol. , vol.261 , pp. 634-645
- O'Gara, M.¹ Klimasauskas, S.² Roberts, R.J.³ Cheng, X.⁴

62
- 0030575782
- (1996) J. Mol. Biol. , vol.263 , pp. 597-606
- O'Gara, M.¹ Roberts, R.J.² Cheng, X.³

63
- 0030789978
- (1997) Nucleic Acids Res. , vol.25 , pp. 2773-2783
- Kumar, S.¹ Horton, J.R.² Jones, G.D.³ Walker, R.T.⁴ Roberts, R.J.⁵ Cheng, X.⁶

64
- 0033524951
- (1999) J. Mol. Biol. , vol.285 , pp. 2021-2034
- Sheikhnejad, G.¹ Brank, A.² Christman, J.K.³ Goddard, A.⁴ Alvarez, E.⁵ Ford H., Jr.⁶ Marquez, V.E.⁷ Marasco, C.J.⁸ Sufrin, J.R.⁹ O'Gara, M.¹⁰ Cheng, X.¹¹

65
- 0034719372
- (2000) Nature , vol.403 , pp. 451-456
- Mol, C.D.¹ Izumi, T.² Mitra, S.³ Tainer, J.⁴

66
- 0000777707
- (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 7231-7235
- Ramstein, J.¹ Lavery, R.²

67
- 0033579953
- (1999) Biochemistry , vol.38 , pp. 952-963
- Stivers, J.T.¹ Pankiewicz, K.W.² Watanabe, K.A.³

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