DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by Hhal methyltransferase

Nucleic Acids Research

Volumn 25, Issue 14, 1997, Pages 2773-2783

  Kumar, S ^e   Horton, J R ^a,d   Jones, G D ^b   Walker, R T ^c   Roberts, R J ^e   Cheng, X ^a,d  

^a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

^b CARDIFF UNIVERSITY   (United Kingdom)

^c UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^d EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e NEW ENGLAND BIOLABS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DEOXYCYTIDINE; DNA METHYLTRANSFERASE; OLIGONUCLEOTIDE; RESTRICTION ENDONUCLEASE; SULFUR;

ARTICLE; CRYSTAL; DNA DETERMINATION; DNA METHYLATION; HALF LIFE TIME; ISOSCHIZOMER; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; R FACTOR;

DEOXYCYTIDINE; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; DNA METHYLATION; MODELS, MOLECULAR; MOLECULAR STRUCTURE; SITE-SPECIFIC DNA METHYLTRANSFERASE (CYTOSINE-SPECIFIC); THIONUCLEOSIDES;

EID: 0030789978     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.14.2773     Document Type: Article

References (45)

1. Kumar, S., Cheng, X., Klimasauskas, S., Mi, S., Posfai, J., Roberts, R.J., and Wilson, G.G. (1994) Nucleic Acids Res. 22, 1-10.
2. Bestor, T.H., and Verdine, G.L. (1994) Curr. Opin. Cell Biol. 6, 380-389.
3. Roberts, R.J., and Halford, S.S. (1993) In Linn, S.M., Loyd, R.S., and Roberts, R.J. (eds) Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp. 35-88.
4. Barlow, D.P. (1995) Science 270, 1610-1613.
5. Li, E., Bestor, T.H., and Jaenisch, R. (1992) Cell 69, 915-926.
6. Jost, J.P., and Saluz, H.P. (eds) (1990) DNA Methylation: Molecular Biology and Biological Significance. Birkhauser Verlag, Basel, Switzerland.
7. Rideout, W.M. 3d, Coetzee, G.A., Olumi, A.F., and Jones, P.A. (1990) Science 249, 1288-1290.
8. Laird, P.W., and Jaenisch, R. (1994) Hum. Mol. Genet. 3, 1487-1495.
9. Kumar, S., Cheng, X., Pflugrath, J.W., and Roberts, R.J. (1992) Biochemistry 31, 8648-8653.
10. Cheng, X., Kumar, S., Posfai. J., Pflugrath, J.W., and Roberts. R.J. (1993) Cell 74, 299-307.
11. Klimasauskas, S., Kumar, S., Roberts, R.J., and Cheng, X. (1994) Cell 76, 357-369.
12. O'Gara, M., Klimasauskas, S., Roberts, R.J., and Cheng, X. (1996) J. Mol. Biol. 261, 634-645.
13. O'Gara, M., Roberts, R.J., and Cheng, X. (1996) J. Mol. Biol. 263, 597-606.
14. Reinisch, K.M., Chen, L., Verdine, G.L., and Lipscomb, W.N. (1995) Cell 82, 143-153.
15. Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., and Morikawa, K. (1995) Cell 83, 773-782.
16. Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E., and Tainer, J.A. (1996). Nature 384, 87-92.
17. Roberts, R.J. (1995) Cell 82, 9-12.
18. Cheng, X., and Blumenthal, R. (1996) Structure 4, 639-645.
19. Wu, J.C., and Santi, D.V. (1987) J. Biol. Chem. 262, 4778-4786.
20. Mi, S., and Roberts, R.J. (1993) Nucleic Acids Res. 21, 2459-2464.
21. Gabbara, S., Sheluho, D., and Bhagwat, A.S. (1995) Biochemistry 34, 8914-8923.
22. Chen, L., MacMillan, A.M., and Verdine, G.L. (1993) J. Am. Chem. Soc. 115, 5318-5319.
23. Boggon, T.J., Hancox, E.L., McAuley-Hecht, K.E., Connolly, B.A., Hunter, W.N., Brown, T., Walker, R.T., and Leonard, G.A. (1996) Nucleic Acids Res. 24, 951-961.
24. Hancox, E.L., Connolly, B. A., and Walker, R.T. (1993) Nucleic Acids Res. 21, 3485-3491.
25. Van Draanen, N.A., Freeman, G.A., Short, S.A., Harvey, R., Jansen, R., Szczech, G., and Koszalka, G.W. (1996) J. Med. Chem. 39, 538-542.
26. Jones, G.D., Lesnik, E.A., Owens, S.R., Risen, L.M., and Walker, R.T. (1996) Nucleic Acids Res. 24, 4117-4122.
27. Klimasauskas, S., and Roberts, R.J. (1995) Nucleic Acids Res. 23, 1388-1395.
28. Segal, I.H. (1975) Enzyme Kinetics. John Wiley & Sons, Inc. New York, NY.
29. Osterman, D.G., DePillis, G.D., Wu, J.C., Matsuda, A., and Santi, D.V. (1988) Biochemistry 27, 5204-5210.
30. Brunger, A.T. (1992) X-PLOR, Version 3.1: A System for X-ray Crystallography and NMR. Yale University Press, New Haven, CT.
31. Secrist, J.A. 3d, Tiwari, K.N., Riordan, J.M., and Montgomery, J.A. (1991) J. Med. Chem. 34, 2361-2366.
32. Brown, D.M., Todd, A., and Varadarajan, S. (1956) J. Chem. Soc. 2384.
33. Dyson, M.R., Coe, P.L., and Walker, R.T. (1991) Carbohydrate Res. 216, 237-248.
34. Dubey, A.K., and Roberts, R.J. (1992) Nucleic Acids Res. 20, 3167-3173.
35. Wyszynski, M.W., Gabbara, S., Kubareva, E.A., Romanova, E.A., Oretskaya, T.S., Gromova, E.S., Shabarova, Z.A., and Bhagwat, A.S. (1993) Nucleic Acids Res. 21, 295-301.
36. Yang, A.S., Shen, J.C., Zingg, J.M., Mi, S. and Jones, P.A. (1995) Nucleic Acids Res. 23, 1380-1387.
37. Posfai, J., Bhagwat, A.S., Posfai, G., and Roberts, R.J. (1989) Nucleic Acids Res. 17, 2421-2435.
38. Saenger, W. (1984) Principles of Nucleic Acid Structure. Springer-Verlag, New York, NY.
39. Koole, L.H., Plavec, J., Liu, H., Vincent, B.R., Dyson, M.R., Coe, P.L., Walker, R.T., Hardy, G.W., Rahim, S.G., and Chattopadhyaya, J. (1992) J. Am. Chem. Soc. 114, 9936-9943.
40. Baker, D.J., Kan, J.L.C., and Smith, S.S. (1988) Gene 74, 207-210.
41. Jordan, F., and Sostman, H.D. (1973) J. Am. Chem. Soc. 95, 6544-6554.
42. Hayatsu, H. (1976) Biochemistry 15, 2677-2682.
43. Liu, L. and Santi, D.V. (1992) Biochemistry 31, 5100-5104.
44. Dyson, M.R., Coe, P.L., and Walker, R.T. (1991) J. Med. Chem. 34, 2782-2786.
45. Rahim, S.G., Trivedi, N., Bogunovic-Batchelor, M.V., Hardy, G.W., Mills, G., Selway, J.W., Snowden, W., Littler, E., Coe, P.L., Basnak, I., Whale, R.F., and Walker, R.T. (1996) J. Med. Chem. 39, 789-795.