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Volumn 92, Issue 1, 1998, Pages 117-129

Crystal structure of a G:T/U mismatch-specific DNA glycosylase: Mismatch recognition by complementary-strand interactions

Author keywords

[No Author keywords available]

Indexed keywords

DNA GLYCOSYLTRANSFERASE;

EID: 0032498302     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80904-6     Document Type: Article
Times cited : (236)

References (45)
  • 1
    • 0028045942 scopus 로고
    • DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the AlkA enzyme of Escherichia coli
    • Bjelland, S., Birkeland, N.K., Benneche, T., Volden, G., and Seeberg, E. (1994). DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the AlkA enzyme of Escherichia coli. J. Biol. Chem. 269, 30489-30495.
    • (1994) J. Biol. Chem. , vol.269 , pp. 30489-30495
    • Bjelland, S.1    Birkeland, N.K.2    Benneche, T.3    Volden, G.4    Seeberg, E.5
  • 3
    • 0023651289 scopus 로고
    • A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine
    • Brown, T., and Jiricny, J. (1987). A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine. Cell 50, 945-950.
    • (1987) Cell , vol.50 , pp. 945-950
    • Brown, T.1    Jiricny, J.2
  • 4
    • 0024974698 scopus 로고
    • Crystal structure and stability of a DNA duplex containing A(anti): G(syn) base pairs
    • Brown, T., Leonard, G.A., Booth, E.D., and Chambers, J. (1989). Crystal structure and stability of a DNA duplex containing A(anti): G(syn) base pairs. J. Mol. Biol. 207, 455-457.
    • (1989) J. Mol. Biol. , vol.207 , pp. 455-457
    • Brown, T.1    Leonard, G.A.2    Booth, E.D.3    Chambers, J.4
  • 6
    • 0028103275 scopus 로고
    • Programs for protein crystallography
    • Collaborative Computing Project No. 4. (1994). Programs for protein crystallography. Acta Crystallogr. D50, 760-763.
    • (1994) Acta Crystallogr. , vol.D50 , pp. 760-763
  • 7
    • 0019170435 scopus 로고
    • Inhibitor of uracil-DNA glycosylase induced by bacteriophage PBS2. Purification and preliminary characterization
    • Cone, R., Bonura, T., and Friedberg, E.C. (1980). Inhibitor of uracil-DNA glycosylase induced by bacteriophage PBS2. Purification and preliminary characterization. J. Biol. Chem. 255, 10354-10358.
    • (1980) J. Biol. Chem. , vol.255 , pp. 10354-10358
    • Cone, R.1    Bonura, T.2    Friedberg, E.C.3
  • 8
    • 0000192748 scopus 로고
    • An automated system for microbatch protein crystallization and screening
    • Chayen, N.E., Shaw Stewart, P.D., Maeder, D.L., and Blow, D.M. (1990). An automated system for microbatch protein crystallization and screening. J. Appl. Crystallogr. 23, 297-302.
    • (1990) J. Appl. Crystallogr. , vol.23 , pp. 297-302
    • Chayen, N.E.1    Shaw Stewart, P.D.2    Maeder, D.L.3    Blow, D.M.4
  • 9
    • 0028675314 scopus 로고
    • Reconstitution of the DNA-base excision-repair pathway
    • Dianov, G., and Lindahl, T. (1994). Reconstitution of the DNA-base excision-repair pathway. Curr. Biol. 4, 1069-1076.
    • (1994) Curr. Biol. , vol.4 , pp. 1069-1076
    • Dianov, G.1    Lindahl, T.2
  • 10
    • 0028604549 scopus 로고
    • Unified catalytic mechanism for DNA glycosylases
    • Dodson, M.L., Michaels, M.L., and Lloyd, R.S. (1994). Unified catalytic mechanism for DNA glycosylases. J. Biol. Chem. 269, 32709-32712.
    • (1994) J. Biol. Chem. , vol.269 , pp. 32709-32712
    • Dodson, M.L.1    Michaels, M.L.2    Lloyd, R.S.3
  • 11
    • 0023782193 scopus 로고
    • Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver
    • Domena, J.D., Timmer, R.T., Dicharry, S.A., and Mosbaugh, D.W. (1988). Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver. Biochemistry 27, 6742-6751.
    • (1988) Biochemistry , vol.27 , pp. 6742-6751
    • Domena, J.D.1    Timmer, R.T.2    Dicharry, S.A.3    Mosbaugh, D.W.4
  • 12
    • 0029805081 scopus 로고    scopus 로고
    • A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase
    • Gallinari, P., and Jiricny, J. (1996). A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase. Nature 383, 735-738.
    • (1996) Nature , vol.383 , pp. 735-738
    • Gallinari, P.1    Jiricny, J.2
  • 13
    • 0026206788 scopus 로고
    • Sparse matrix sampling: A screening method for crystallization of proteins
    • Jancarik, J., and Kim, S.-H. (1991 ). Sparse matrix sampling: a screening method for crystallization of proteins. J. Appl. Crystallogr. 24, 409-411.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 409-411
    • Jancarik, J.1    Kim, S.-H.2
  • 14
    • 0030472346 scopus 로고    scopus 로고
    • Mismatch repair and cancer
    • T. Lindahl, ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
    • Jiricny, J (1996). Mismatch repair and cancer. In Genetic Instability in Cancer, Cancer Surveys, Vol. 28, T. Lindahl, ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 47-68.
    • (1996) Genetic Instability in Cancer, Cancer Surveys , vol.28 , pp. 47-68
    • Jiricny, J.1
  • 15
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.-Y., Cowan, S.W., and Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47, 110-119.
    • (1991) Acta Crystallogr. , vol.A47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 16
    • 0030035663 scopus 로고    scopus 로고
    • Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase
    • Kavli, B., Slupphaug, G., Mol, C.D., Arvai, A.S., Petersen, S.B., and Tainer, J.A. (1996). Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15, 3442-3447.
    • (1996) EMBO J. , vol.15 , pp. 3442-3447
    • Kavli, B.1    Slupphaug, G.2    Mol, C.D.3    Arvai, A.S.4    Petersen, S.B.5    Tainer, J.A.6
  • 17
    • 0028867842 scopus 로고
    • Mismatch repair: Mechanisms and relationship to cancer susceptibility
    • Kolodner, R. (1995). Mismatch repair: mechanisms and relationship to cancer susceptibility. Trends Biochem. Sci. 20, 397-401.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 397-401
    • Kolodner, R.1
  • 18
    • 0026244229 scopus 로고
    • MOLSCRIPT - A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. (1991). MOLSCRIPT - a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 19
    • 0000243829 scopus 로고
    • PROCHECK - A program to checkthe stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss. D.S., and Thornton, J.M. (1993). PROCHECK - a program to checkthe stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-290.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-290
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 21
    • 0002300271 scopus 로고    scopus 로고
    • Mammalian mismatch-specific DNA-Glycosylases
    • I. Hickson, ed. (Houston: Landes Bioscience)
    • Lettieri, T., and Jiricny, J. (1997). Mammalian mismatch-specific DNA-Glycosylases. In Base Excision Repairof DNA Damage, I. Hickson, ed. (Houston: Landes Bioscience), pp. 45-66.
    • (1997) Base Excision Repairof DNA Damage , pp. 45-66
    • Lettieri, T.1    Jiricny, J.2
  • 22
    • 0016257644 scopus 로고
    • Heat-induced deamination of cytosine residues in deoxyribonucleic acid
    • Lindahl, T., and Nyberg, B. (1974). Heat-induced deamination of cytosine residues in deoxyribonucleic acid. Biochemistry 13, 3405-3410.
    • (1974) Biochemistry , vol.13 , pp. 3405-3410
    • Lindahl, T.1    Nyberg, B.2
  • 23
    • 0028057108 scopus 로고
    • Raster3D Version 2.0 - A program for photorealistic molecular graphics
    • Merrit, E.A., and Murphy, M.E.P. (1994). Raster3D Version 2.0 - a program for photorealistic molecular graphics. Acta Crystallogr. 50, 869-873.
    • (1994) Acta Crystallogr. , vol.50 , pp. 869-873
    • Merrit, E.A.1    Murphy, M.E.P.2
  • 24
    • 0028934537 scopus 로고
    • Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis
    • Mol, C.D., Arvai, A.S., Slupphaug, G., Kavli, B., Alseth, I., Krokan, H.E., andTainer, J.A. (1995a). Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell 80, 869-878.
    • (1995) Cell , vol.80 , pp. 869-878
    • Mol, C.D.1    Arvai, A.S.2    Slupphaug, G.3    Kavli, B.4    Alseth, I.5    Krokan, H.E.6    Tainer, J.A.7
  • 25
    • 0029084487 scopus 로고
    • Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: Protein mimicry of DNA
    • Mol, C.D., Arvai, A.S., Sanderson, R.J., Slupphaug, G., Kavli, B., Krokan, H.E., Mosbaugh, D.W., and Tainer, J.A. (1995b). Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA. Cell 82, 701-708.
    • (1995) Cell , vol.82 , pp. 701-708
    • Mol, C.D.1    Arvai, A.S.2    Sanderson, R.J.3    Slupphaug, G.4    Kavli, B.5    Krokan, H.E.6    Mosbaugh, D.W.7    Tainer, J.A.8
  • 26
    • 84920325457 scopus 로고
    • AMoRE - An automated package for molecular replacement
    • Navaza, J. (1994). AMoRE - an automated package for molecular replacement. Acta Crystallogr. A50, 157-163.
    • (1994) Acta Crystallogr. , vol.A50 , pp. 157-163
    • Navaza, J.1
  • 27
    • 0027383758 scopus 로고
    • The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells
    • Neddermann, P., and Jiricny, J. (1993). The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells. J. Biol. Chem., 268, 21218-21224.
    • (1993) J. Biol. Chem. , vol.268 , pp. 21218-21224
    • Neddermann, P.1    Jiricny, J.2
  • 28
    • 0028201737 scopus 로고
    • Efficient removal of uracil from G:U mispairs by the mismatch-specific thymine DNA glycosylase from HeLa cells
    • Neddermann, P., and Jiricny, J. (1994). Efficient removal of uracil from G:U mispairs by the mismatch-specific thymine DNA glycosylase from HeLa cells. Proc. Natl. Acad. Sci. USA, 91, 1642-1646.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1642-1646
    • Neddermann, P.1    Jiricny, J.2
  • 30
    • 0000732609 scopus 로고
    • GRASP - Graphical representation and analysis of surface properties
    • Nicholls, A., Bharadwaj, R., and Honig, B. (1993). GRASP - graphical representation and analysis of surface properties. Biophys. J. 64, A116.
    • (1993) Biophys. J. , vol.64
    • Nicholls, A.1    Bharadwaj, R.2    Honig, B.3
  • 31
    • 0029948001 scopus 로고    scopus 로고
    • SSAP - Sequential structure alignment program for protein structure comparison
    • Orengo, C.A., and Taylor, W.R. (1996). SSAP - sequential structure alignment program for protein structure comparison. Methods Enzymol. 266, 617-635.
    • (1996) Methods Enzymol. , vol.266 , pp. 617-635
    • Orengo, C.A.1    Taylor, W.R.2
  • 32
    • 0018143102 scopus 로고
    • An optimal potential function for the calculation of nucleic acid interaction energies. I. Base stacking
    • Ornstein, R.L., Rein, R., Breen, D.L., and MacElroy, R.D. (1978). An optimal potential function for the calculation of nucleic acid interaction energies. I. Base stacking. Biopolymers 17, 2341-2360.
    • (1978) Biopolymers , vol.17 , pp. 2341-2360
    • Ornstein, R.L.1    Rein, R.2    Breen, D.L.3    MacElroy, R.D.4
  • 33
    • 0002452464 scopus 로고
    • Oscillation data reduction program
    • L. Sawyer, N. Isaacs, and S. Bailey, eds. (Warrington, U.K.: CLRC Daresbury Laboratory)
    • Otwinowski, Z., and Minor, W. (1993). Oscillation data reduction program. In Data Collection and Processing, L. Sawyer, N. Isaacs, and S. Bailey, eds. (Warrington, U.K.: CLRC Daresbury Laboratory), pp. 556-562.
    • (1993) Data Collection and Processing , pp. 556-562
    • Otwinowski, Z.1    Minor, W.2
  • 34
    • 0031961907 scopus 로고    scopus 로고
    • Direct measurement of the substrate preference of uracil-DNA glycosylase
    • Panayotou, G., Brown, T.A., Barlow, T., Pearl, L.H., and Savva, R. (1998). Direct measurement of the substrate preference of uracil-DNA glycosylase. J. Biol. Chem. 273, 45-50.
    • (1998) J. Biol. Chem. , vol.273 , pp. 45-50
    • Panayotou, G.1    Brown, T.A.2    Barlow, T.3    Pearl, L.H.4    Savva, R.5
  • 35
    • 19144373027 scopus 로고    scopus 로고
    • The problem with pyrimidines
    • Pearl, L.H., and Savva, R. (1996). The problem with pyrimidines. Nature Struct. Biol. 3, 485-487.
    • (1996) Nature Struct. Biol. , vol.3 , pp. 485-487
    • Pearl, L.H.1    Savva, R.2
  • 36
    • 0029068245 scopus 로고
    • On base flipping
    • Roberts, R.J. (1995). On base flipping. Cell 82, 9-12.
    • (1995) Cell , vol.82 , pp. 9-12
    • Roberts, R.J.1
  • 37
    • 0028657625 scopus 로고
    • Purification and biochemical characterization of recombinant N-methylpurine-DNA glycosylase of the mouse
    • Roy, R., Brooks, C., and Mitra, S. (1994). Purification and biochemical characterization of recombinant N-methylpurine-DNA glycosylase of the mouse. Biochemistry 33, 15131-15140.
    • (1994) Biochemistry , vol.33 , pp. 15131-15140
    • Roy, R.1    Brooks, C.2    Mitra, S.3
  • 38
    • 0029115366 scopus 로고
    • Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex
    • Savva, R., and Pearl, L.H. (1995). Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex. Nature Struct. Biol. 2, 752-757.
    • (1995) Nature Struct. Biol. , vol.2 , pp. 752-757
    • Savva, R.1    Pearl, L.H.2
  • 39
    • 0028959237 scopus 로고
    • The structural basis of specific base-excision repair by uracil-DNA glycosylase
    • Savva, R. McAuley-Hecht, K., Brown, T.A., and Pearl, L.H. (1995). The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 373, 487-493.
    • (1995) Nature , vol.373 , pp. 487-493
    • Savva, R.1    McAuley-Hecht, K.2    Brown, T.A.3    Pearl, L.H.4
  • 40
    • 0030911354 scopus 로고    scopus 로고
    • Investigation of the mechanisms of DNA binding of the human G/T glycosylase using designed inhibitors
    • Schärer, O., Kawate, T., Gallinari, P., Jiricny, J., and Verdine, G.L. (1997). Investigation of the mechanisms of DNA binding of the human G/T glycosylase using designed inhibitors. Proc. Natl. Acad Sci. USA 94, 4878-4883.
    • (1997) Proc. Natl. Acad Sci. USA , vol.94 , pp. 4878-4883
    • Schärer, O.1    Kawate, T.2    Gallinari, P.3    Jiricny, J.4    Verdine, G.L.5
  • 41
    • 0018866267 scopus 로고
    • The structure of drug-deoxydinucleoside phosphate complex. Generalized conformational behavior of intercalation complexes with RNA and DNA fragments
    • Shieh, H.S., Berman, H.M., Dabrow, M., and Neidle, S. (1980). The structure of drug-deoxydinucleoside phosphate complex. Generalized conformational behavior of intercalation complexes with RNA and DNA fragments. Nucl. Acids Res. 8, 85-97.
    • (1980) Nucl. Acids Res. , vol.8 , pp. 85-97
    • Shieh, H.S.1    Berman, H.M.2    Dabrow, M.3    Neidle, S.4
  • 42
    • 0029904839 scopus 로고    scopus 로고
    • A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
    • Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E., and Tainer, J.A. (1996). A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384, 87-91.
    • (1996) Nature , vol.384 , pp. 87-91
    • Slupphaug, G.1    Mol, C.D.2    Kavli, B.3    Arvai, A.S.4    Krokan, H.E.5    Tainer, J.A.6
  • 44
    • 0024541790 scopus 로고
    • In vitro correction of G/T mispairs to G/C pairs in nuclear extracts from human cells
    • Wiebauer, K., and Jiricny, J. (1989). In vitro correction of G/T mispairs to G/C pairs in nuclear extracts from human cells. Nature 339, 234-236.
    • (1989) Nature , vol.339 , pp. 234-236
    • Wiebauer, K.1    Jiricny, J.2
  • 45
    • 0025314841 scopus 로고
    • Mismatch-specific thymine DNA glycosylase and DNA polymerase b mediate the correction of G-T mispairs in nuclear extracts from human cells
    • Wiebauer, K., and Jiricny, J. (1990). Mismatch-specific thymine DNA glycosylase and DNA polymerase b mediate the correction of G-T mispairs in nuclear extracts from human cells. Proc. Natl. Acad. Sci. USA 87, 5842-5845.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 5842-5845
    • Wiebauer, K.1    Jiricny, J.2


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