Multiple independent defective Suppressor-mutator transposon insertions in Arabidopsis: A tool for functional genomics

Plant Cell

Volumn 11, Issue 10, 1999, Pages 1841-1852

  Tissier, Alain F ^a,b   Marillonnet, Sylvestre ^a   Klimyuk, Victor ^a   Patel, Kanu ^a   Torres, Miguel Angel ^c   Murphy, George ^a   Jones, Jonathan D G ^a  

^a JOHN INNES CENTRE   (United Kingdom)

^b IRFM   (France)

^c Lab de Radiobiologie Veg ^*

Author keywords

[No Author keywords available]

Indexed keywords

FUNCTIONAL GENOMICS; GENOME ANALYSIS; PLANT GENETICS; POLYMERASE CHAIN REACTION; TRANSPOSON;

ARABIDOPSIS;

EID: 0033213398     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.11.10.1841     Document Type: Article

References (40)

1. Aarts, M.G., Corzaan, P., Stiekema, W.J., and Pereira, A. (1995). A two-element Enhancer-Inhibitor transposon system in Arabidopsis thaliana. Mol. Gen. Genet. 247, 555-564.
2. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
3. Bancroft, I., and Dean, C. (1993). Transposition pattern of the maize element Ds in Arabidopsis thaliana. Genetics 134, 1221-1229.
4. Baulcombe, D.C. (1996). RNA as a target and an initiator of posttranscriptional gene silencing in transgenic plants. Plant Mol. Biol. 32, 79-88.
5. Bechtold, N., Ellis, J., and Pelletier, G. (1993). In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. Ser. III Sci. Vie 316, 1118-1193.
6. Cardon, G.H., Frey, M., Saedler, H., and Gierl, A. (1993). Mobility of the maize transposable element En/Spm in Arabidopsis thaliana. Plant J. 3, 773-784.
7. Carroll, B.J., Klimyuk, V.I., Thomas, C.M., Bishop, G.J., Harrison, K., Scofield, S.R., and Jones, J.D. (1995). Germinal transpositions of the maize element Dissociation from T-DNA loci in tomato. Genetics 139, 407-420.
8. Cavrois, M., Wain-Hobson, S., and Wattel, E. (1995). Stochastic events in the amplification of HTLV-I integration sites by linker-mediated PCR. Res. Virol. 146, 179-184.
9. Chandler, V.L., and Hardeman, K.J. (1992). The Mu elements of Zea mays. Adv. Genet. 30, 77-122.
10. Choi, S.D., Creelman, R., Mullet, J., and Wing, R.A. (1995). Construction and characterization of a bacterial artificial chromosome library from Arabidopsis thaliana. Weeds World 2, 17-20.
11. Das, L., and Martienssen, R. (1995). Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell 7, 287-294.
12. Feldmann, K.A. (1991). T-DNA insertion mutagenesis in Arabidopsis: Mutational spectrum. Plant J. 1, 71-82.
13. Gheysen, G., Herman, L., Breyne, P., Gielen, J., Van Montagu, M., and Depicker, A. (1990). Cloning and sequence analysis of truncated T-DNA inserts from Nicotiana tabacum. Gene 94, 155-163.
14. Greenblatt, I.M., and Brink, R.A. (1962). Twin mutations in medium variegated pericarp maize. Genetics 47, 489-501.
15. Hehl, R., Nacken, W.K., Krause, A., Saedler, H., and Sommer, H. (1991). Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize. Plant Mol. Biol. 16, 369-371.
16. James, D.W., Jr., Lim, E., Keller, J., Plooy, I., Ralston, E., and Dooner, H.K. (1995). Directed tagging of the Arabidopsis FATTY ACID ELONGATION1 (FAE1) gene with the maize transposon Activator. Plant Cell 7, 309-319.
17. Jones, J.D.G., Carland, F.C., Lim, E., Ralston, E., and Dooner, H.K. (1990). Preferential transposition of the maize element Activator to linked chromosomal locations in tobacco. Plant Cell 2, 701-707.
18. Jones, J.D.G., Shlumukov, L., Carland, F., English, J., Scofield, S., Bishop, G., and Harrison, K. (1992). Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants. Transgenic Res. 1, 285-297.
19. Kempin, S.A., Liljegren, S.J., Block, L.M., Rounsley, S.D., Yanofsky, M.F., and Lam, E. (1997). Targeted disruption in Arabidopsis. Nature 389, 802-803.
20. Klimyuk, V.I., and Jones, J.D. (1997). AtDMC1, the Arabidopsis homologue of the yeast DMC1 gene: Characterization, transposon-induced allelic variation and meiosis-associated expression. Plant J. 11, 1-14.
21. Koes, R., et al. (1995). Targeted gene inactivation in petunia by PCR-based selection of transposon insertion mutants. Proc. Natl. Acad. Sci. USA 92, 8149-8153.
22. Krysan, P.J., Young, J.C., Tax, F., and Sussman, M.R. (1996). Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport. Proc. Natl. Acad. Sci. USA 93, 8145-8150.
23. Lagerstrom, M., Parik, J., Malmgren, H., Stewart, J., Pettersson, U., and Landegren, U. (1991). Capture PCR: Efficient amplification of DNA fragments adjacent to a known sequence in human and YAC DNA. PCR Methods Appl. 1, 111-119.
24. Liu, Y.G., Mitsukawa, N., Oosumi, T., and Whittier, R.F. (1995). Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8, 457-463.
25. Martienssen, R.A. (1998). Functional genomics: Probing plant gene function and expression with transposons. Proc. Natl. Acad. Sci. USA 95, 2021-2026.
26. McKinney, E.C., Ali, N., Traut, A., Feldmann, K.A., Belostotsky, D.A., McDowell, J.M., and Meagher, R.B. (1995). Sequence-based identification of T-DNA insertion mutations in Arabidopsis: Actin mutants act2-1 and act4-1. Plant J. 8, 613-622.
27. Meissner, R.C., et al. (1999). Function search in a large transcription factor gene family in Arabidopsis: Assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes. Plant Cell 11, 1827-1840.
28. Miklos, G.L., and Rubin, G.M. (1996). The role of the genome project in determining gene function: Insights from model organisms. Cell 86, 521-529.
29. Mozo, T., Fischer, S., Shiyuza, H., and Altmann, T. (1998). Construction and characterization of the IGF Arabidopsis BAC library. Mol. Gen. Genet. 258, 562-570.
30. Nacken, W.K., Piotrowiak, R., Saedler, H., and Sommer, H. (1991). The transposable element Tam1 from Antirrhinum majus shows structural homology to the maize transposon En/Spm and has no sequence specificity of insertion. Mol. Gen. Genet. 228, 201-208.
31. Nacry, P., Camilleri, C., Courtial, B., Caboche, M., and Bouchez, D. (1998). Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis. Genetics 149, 641-650.
32. Ochman, H., Gerber, A.S., and Hartl, D.L. (1988). Genetic applications of an inverse polymerase chain reaction. Genetics 120, 621-623.
33. O'Keefe, D.P., Tepperman, J.M., Dean, C., Leto, K.J., Erbes, D.L., and Odell, T. (1994). Plant expression of a bacterial cytochrome P450 that catalyzes activation of a sulfonylurea pro-herbicide. Plant Physiol. 105, 473-482.
34. Saedler, H., et al. (1984). Transposable elements in Antirrhinum majus and Zea mays. Cold Spring Harbor Symp. Quant. Biol. 49, 355-361.
35. Speulman, E., Metz, P.L.J., van Arkel, G., te Lintel Hekkert, B., Stiekma, W.J., and Pereira, A. (1999). A two-component Enhancer-Inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome. Plant Cell 11, 1853-1866.
36. Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J.D., Dean, C., Ma, H., and Martienssen, R. (1995). Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9, 1797-1810.
37. Svab, Z., Harper, E.C., Jones, J.D., and Maliga, P. (1990). Aminoglycoside-3′-adenyltransferase confers resistance to spectinomycin and streptomycin in Nicotiana tabacum. Plant Mol. Biol. 14, 197-205.
38. Torres, M.A., Onouchi, H., Hamada, S., Machida, C., Hammond-Kosack, K.E., and Jones, J.D. (1998). Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox). Plant J. 14, 365-370.
39. Winkler, R.G., Frank, M.R., Galbraith, D.W., Feyereisen, R., and Feldmann, K.A. (1998). Systematic reverse genetics of transfer-DNA-tagged lines of Arabidopsis: Isolation of mutations in the cytochrome p450 gene superfamily. Plant Physiol. 118, 743-750.
40. Wisman, E., Hartmann, U., Sagasser, M., Baumann, E., Palme, K., Hahlbrock, K., Saedler, H., and Weisshaar, B. (1998). Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. USA 95, 12432-12437.