Plant tagnology

Trends in Plant Science

Volumn 4, Issue 3, 1999, Pages 90-96

  Maes, Tamara ^a   De Keukeleire, Peter ^b   Gerats, Tom ^b  

^a INSTITUT DE BIOLOGIA MOLECULAR DE BARCELONA   (Spain)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

EXPRESSED SEQUENCE TAG; GENE ISOLATION; GENE TAGGING; MOLECULAR CLONING; MUTAGENESIS; REPORTER GENE; TRANSPOSON;

EID: 0033063371     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1360-1385(99)01375-8     Document Type: Review

References (40)

1. Osborne B.I., Baker B. Movers and shakers: maize transposons as tools for analyzing other plant genomes. Curr. Opin. Cell. Biol. 7:1995;406-413.
2. Ochman H., Gerber A.S., Hartl D.L. Genetic applications of an inverse polymerase chain reaction. Genetics. 120:1988;621-623.
3. Liu Y.G., Whittier R.F. Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics. 25:1995;674-681.
4. Smith D.et al. Characterization and mapping of Ds-GUS-T-DNA lines for targeted insertional mutagenesis. Plant J. 10:1996;721-732.
5. Fedoroff N., Furtek D., Nelson O.Jr. Cloning of the bronze locus in maize by a simple and generizable procedure using transposable controlling element Ac. Proc. Natl. Acad. Sci. U. S. A. 81:1984;3825-3829.
6. Souer E.et al. A general method to isolate genes tagged by a high copy number transposable element. Plant J. 7:1995;677-685.
7. Van den Broeck D.et al. Transposon Display identifies individual transposable elements in high copy number elements. Plant J. 13:1998;121-129.
8. Vos P.et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23:1995;4407-4414.
9. Frey M., Stettner C., Gierl A. A general method for gene isolation in tagging approaches: amplification of insertion mutagenised sites (AIMS). Plant J. 13:1998;717-721.
10. Smith V., Botstein D., Brown P.O. Genetic footprinting: a genomic strategy for determining a gene's function given its sequence. Proc. Natl. Acad. Sci. U. S. A. 92:1995;6479-6483.
11. Burns N.et al. Large-scale analysis of gene expression, protein localization and gene disruption in Saccharomyces cerevisiae. Genes Dev. 8:1994;1087-1105.
12. Shoemaker D.D.et al. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nat. Genet. 14:1997;450-456.
13. Kempin S.A.et al. Targeted gene disruption in Arabidopsis. Nature. 389:1997;802-803.
14. Azpiroz-Leehan R., Feldmann K.A. T-DNA insertion mutagenesis in Arabidopsis: going back and forth. Trends Genet. 13:1997;152-156.
15. Das L., Martienssen R. Site selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell. 7:1995;287-294.
16. Koes R.et al. Targeted gene inactivation in petunia by PCR-based selection of transposon insertion mutants. Proc. Natl. Acad. Sci. U. S. A. 92:1995;8149-8153.
17. Cresse A.D.et al. Mu1-related transposable elements of maize preferentially insert into low copy number DNA. Genetics. 140:1995;315-324.
18. Sundaresan V. Horizontal spread of transposon mutagenesis: new uses for old elements. Trends Plant Sci. 6:1996;184-190.
19. Fedoroff N.V., Smith D.L. A versatile system for detecting transposition in Arabidopsis. Plant J. 3:1993;273-289.
20. Lindsey K.et al. Tagging genomic sequences that direct transgene expression by activation of a promoter trap in plants. Transgenic Res. 2:1993;33-47.
21. Sundaresan V.et al. Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9:1995;1797-1810.
22. Koncz C.et al. High-frequency T-DNA-mediated gene tagging in plants. Proc. Natl. Acad. Sci. U. S. A. 86:1989;8467-8471.
23. Mathur J.et al. Gene identification with sequenced T-DNA tags generated by transformation of Arabidopsis cell suspension. Plant J. 13:1998;701-716.
24. Zambrowicz B.P.et al. Disruption and sequence identification of 2,000 genes in mouse embryonic stem cells. Nature. 392:1998;608-611.
25. Ballinger D.G., Benzer S. Targeted gene mutation in Drosophila. Proc. Natl. Acad. Sci. U. S. A. 86:1989;9402-9406.
26. Kaiser K., Goodwin S.F. 'Site selected' transposon mutagenesis of Drosophila. Proc. Natl. Acad. Sci. U. S. A. 87:1990;1686-1690.
27. Zwaal R.R.et al. Target-selected gene inactivation in Caenorhabditis elegans using a frozen transposon insertion mutant bank. Proc. Natl. Acad. Sci. U. S. A. 90:1993;7431-7435.
28. Schena M.et al. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470.
29. Roth F.P.et al. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole genome mRNA quantitation. Nat. Biotechnol. 16:1998;939-945.
30. Krysan P.J.et al. Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport. Proc. Natl. Acad. Sci. U. S. A. 93:1996;8145-8150.
31. Hirsch R.E.et al. A role for the AKT1 potassium channel in plant nutrition. Science. 280:1998;918-921.
32. McKinney E.C.et al. Sequence-based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1. Genetics. 149:1995;663-675.
33. Gilliland L.U.et al. Detection of deleterious genotypes in multigenerational studies. I. Disruptions in individual Arabidopsis actin genes. Genetics. 149:1998;717-725.
34. Bensen R.J.et al. Cloning and characterization of the maize An1 gene. Plant Cell. 7:1995;75-84.
35. Mena M.et al. Diversification of C-function activity in maize flower development. Science. 274:1996;1537-1540.
36. Wisman E.et al. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U. S. A. 95:1998;12432-12437.
37. Winkler R.G.et al. Systematic reverse genetics of transfer-DNA-tagged lines of Arabidopsis. Isolation of mutations in the cytochrome p450 gene superfamily. Plant Physiol. 118:1998;743-750.
38. Babiychuk E.et al. Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U. S. A. 94:1997;12722-12727.
39. Springer P.S.et al. Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science. 268:1995;877-880.
40. Martienssen R.A. Functional genomics: probing plant gene function and expression with transposons. Proc. Natl. Acad. Sci. U. S. A. 95:1998;2021-2026.