Thyroid hormone receptor, v-erbA, and chromatin

Vitamins and Hormones

Volumn 58, Issue , 2000, Pages 449-492

  Wolffe, Alan P ^a   Collingwood, Trevor N ^a   Li, Qiao ^a   Yee, Janet ^a   Urnov, Fyodor ^a   Shi, Yun Bo ^a  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ONCOPROTEIN; THYROID HORMONE RECEPTOR; TRANSCRIPTION FACTOR;

ANIMAL; CHEMISTRY; CHROMATIN; GENETICS; HUMAN; PHYSIOLOGY; REVIEW;

ANIMALS; CHROMATIN; HUMANS; ONCOGENE PROTEINS V-ERBA; RECEPTORS, THYROID HORMONE; TRANSCRIPTION FACTORS;

EID: 0033631688     PISSN: 00836729     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0083-6729(00)58033-9     Document Type: Review

References (198)

1. L. Alland R. Muhle H. Hou Jr. J. Potes L. Chin N. Schreiber-Agus R.A. De Pinho Role of NCoR and histone deacetylase in Sin3-mediated transcriptional and oncogenic repression Nature (London) 387 1997 49 55
2. A. Almer W. Horz Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast EMBO J. 5 1986 2681
3. A. Almer H. Rudolph A. Hinnen W. Horz Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional activating DNA elements EMBO J. 5 1986 2689 2696
4. G. Almouzni A.P. Wolffe Replication coupled chromatin assembly is required for the repression of basal transcription in vivo Genes Dev. 7 1993 2033 2047
5. A.A. Annunziato L.-L.Y. Frado R.L. Seale C.L.F. Woodcock Treatment with sodium butyrate inhibits the complete condensation of interphase chromatin Chromosoma 96 1988 132 138
6. T.K. Archer M.G. Cordingley R.G. Wolford G.L. Hager Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter Mol. Cell. Biol. 11 1991 688 698
7. G. Arents E.N. Moudrianakis Topography of the histone octamer surface: Repeating structural motifs utilized in the docking of nucleosomal DNA Proc. Natl. Acad. Sci. U.S.A. 90 1993 10489 10493
8. G. Arents E.N. Moudrianakis The histone fold: A ubiquitous architectural motif utilized in DNA compaction and protein dimerization Proc. Natl. Acad. Sci. U.S.A. 92 1995 11170 11174
9. G. Arents R.W. Burlingame B.W. Wang W.E. Love E.N. Moudrianakis The nucleosomal core histone octamer at 3.1Å resolution: A tripartite protein assembly and a left-handed superhelix Proc. Natl. Acad. Sci. U.S.A. 88 1991 10148 10152
10. J.L. vaneres A. Martin J. Parello The N tails of histones H3 and H4 adopt a highly structured conformation in the nucleosome J. Mol. Biol. 273 1997 503 508
11. A. vaniahmad C. Steiner A.C. Kohne R. Renkawitz Modular structure of a chicken lysozyme silencer: Involvement of an unusual thyroid hormone receptor binding site Cell 61 1990 505 514
12. A. vaniahmad A.C. Kohne R. Renkawitz A transferable silencing domain is present in the thyroid hormone receptor, in the v-erbA oncogene product and in the retinoic acid receptor EMBO J. 11 1992 1015 1023
13. A. vaniahmad I. Ha D. Reinberg S.Y. Tsai M.J. Tsai B.W. O'Malley Interaction of a receptor β with transcription factor TFIIB may mediate target gene activation and derepression by thyroid hormone Proc. Natl. Acad. Sci. U.S.A. 90 1993 8832 8836
14. D. Barrettino M.V. Ruiz H.G. Stunnenberg Characterization of the ligand dependent transactivation domain of thyroid hormone receptor EMBO J. 13 1994 3039 3049
15. A. Bauer W. Mikulits G. Lagger G. Stengl G. Brosch H. Beug The thyroid hormone receptor functions as a ligand-operated developmental switch between proliferation and differentiation of erythroid progenitors EMBO J. 17 1998 4291 4303
16. W.R. Bauer J.J. Hayes J.H. White A.P. Wolffe Nucleosome structural changes due to acetylation J. Mol. Biol. 236 1994 685 690
17. H. Beug E.W. Mullner M.J. Hyman Insights into erythroid differentiation obtained from studies on avian erythroblastosis virus Curr. Opin. Cell Biol. 6 1994 816 824
18. J.C. Blanco S. Minucci J. Lu X.J. Zang K.K. Walker H. Chen R.M. Evans Y. Nakatani K. Ozato The histone acetylase PCAF is a nuclear receptor coactivator Genes Rev. 12 1998 1638 1651
19. P. Blomquist Q. Li O. Wrange The affinity of nuclear factor 1 for its DNA site is drastically reduced by nucleosome organization irrespective of its rotational and translational position J. Biol. Chem. 271 1996 154 159
20. B.G. vonde M. Sharif M.L. Privalsky Ontogeny of the v-erbA oncoprotein from the thyroid hormone receptor: An alteration in the DNA binding domain plays a role crucial for v-erbA function J. Virol. 65 1991 2037 2046
21. W. Bourguet M. Ruff P. Chamvon H. Gronemeyer D. Moras Crystal structure of the ligand-binding domain of the human nuclear receptor RXR-alpha Nature (London) 375 1995 377 382
22. P. Bouvet S. Dimitrov A.P. Wolffe Specific regulation of chromosomal 5S rRNA gene transcription in vivo by histone H1 Genes Dev. 8 1994 1147 1159
23. D.J. Bradley H.C. Towle W.S. Young Alpha and beta thyroid hormone receptor (TR) gene expression during auditory neurogenesis: Evidence for TR isoform-specific transcriptional regulation in vivo Proc. Natl. Acad. Sci. U.S.A. 91 1994 439 443
24. 3-inducible promoters and blocks activity of the retinoid acid receptor New Biol. 1 1993 329 336
25. D.D. Brown Z. Wang A. Kanamori B. Eliceiri J.D. Furlow R. Schwartzman Amphibian metamorphosis: A complex program of gene expression changes controlled by the thyroid hormone Recent Prog. Horm. Res. 50 1995 309 315
26. G. Buschhausen B. Wittig M. Graessmann A. Graessman Chromatin structure is required to block transcription of the methylated herpes simplx virus thymidine kinase gene Proc. Natl. Acad. Sci. U.S.A. 84 1987 1177 1181
27. P.D. Cary C. Crane-Robinson E.M. Bradbury G.H. Dixon Effect of acetylation on the binding of N-terminal peptides of histone H4 to DNA Eur. J. Biochem. 127 1982 137 143
28. V. Cavaillès S. Dauvois F. L'Horset G. Lopez S. Hoare P.J. Kushner M.G. Parker Nuclear factor RIP140 modulates transcriptional activation by the estrogen receptor EMBO J. 14 1995 3741 3751
29. D. Chakravarti V.J. LaMorte M.C. Nelson T. Nakajima H. Juguilon M. Montminy R.M. Evans Mediation of nuclear receptor signalling by CBP/p300 Nature (London) 383 1996 99 103
30. V.K.K. Chatterjee Molecular genetics and pathophysiology of thyroid hormone resistance Curr. Opin. Endocrinol. Diabetes 4 1997 371 376
31. V.K.K. Chatterjee R.J. Clifton-Bligh C. Matthews The steroid hormone superfamily of receptors Mol. Endocrinol. 4 1997 73 101
32. S. Chavez M. Beato Nucleosome-mediated synergism between transcription factors on the mouse mammary tumor virus promoter Proc. Natl. Acad. Sci. U.S.A. 94 1997 2885 2890
33. H. Chen Z. Smit-McBride S. Lewis M. Sharif M.L. Privalsky Nuclear hormone receptors involved in neoplasia: Erb A exhibits a novel DNA sequence specificity determined by amino acids outside of the zinc-finger domain Mol. Cell. Biol. 13 1993 2366 2376
34. H. Chen R.J. Lin R.L. Schiltz D. Chakravarti A. Nash L. Nagy M.L. Privalsky Y. Nakatani R.M. Evans Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300 Cell (Cambridge, Mass.) 90 1997 569 580
35. J.D. Chen R.M. Evans A transcriptional co-repressor that interacts with nuclear hormone receptor Nature (London) 377 1995 454 457
36. R.J. Clifton-Bligh F. de Zegher R.L. Wagner T.N. Collingwood I. Francois M. van Helvoirt R.J. Fletterick C.K. Chatterjee A novel TR beta mutation (R383H) in resistance to thyroid hormone syndrome predominantly impairs corepressor release and negative transcriptional regulation Mol. Endocrinol. 12 1998 609 621
37. T.N. Collingwood M. Adams Y. Tone V.K.K. Chatterjee Spectrum of transcriptional, dimerization, and domainant negative properties of twenty different mutant thyroid hormone β-receptors in thyroid hormone resistance syndrome Mol. Endocrinol. 8 1994 1262 1277
38. T.N. Collingwood O. Rajanayagam M. Adams R. Wagner V. Cavaillès E. Kalkhoven C. Matthews E. Nystrom K. Stenlof G. Lindstedt L. Tisell R.J. Fletterick M.G. Parker V.K. Chatterjee A natural transactivation mutation in the thyroid hormone beta receptor: Impaired interaction with putative transcriptional mediators Proc. Natl. Acad. Sci. U.S.A. 94 1997 248 253
39. T.N. Collingwood R. Wagner C.H. Matthews R.J. Clifton-Bligh M. Gurnell O. Rajanayagam M. Agostini R.J. Fletterick P. Beck-Peccoz W. Reinhardt G. Binder M.B. Ranke A. Hermus R.D. Hesch J. Lazarus P. Newrick V. Parfitt P. Raggatt F. de Zegher V.K. Chatterjee A role for helix 3 of the TRβ ligand-binding domain in coactivator recruitment identified by characterization of a third cluster of mutations in resistance to thyroid hormone EMBO J. 17 1998 4760 4770
40. P.R. Cook RNA polymerase: Structural determinant of the chromatin loop and the chromosome BioEssays 16 1994 425 430
41. J. Coté J. Quinn J.L. Workman C.L. Peterson Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex Science 265 1994 53 60
42. J. Covault R. Chalkley The identification of distinct populations of acetylated histone J. Biol. Chem. 255 1980 9110 9116
43. K. Damm R.M. Evans Identification of a domain required for oncogenic activity and transcriptional suppression by v-erbA and thyroid-hormone receptor α Proc. Natl. Acad. Sci. U.S.A. 90 1993 10668 10672
44. K. Damm H. Beug T. Graf B. Vennstrom A single point mutation in erbA restores the erythroid transforming potential of a mutant avian erythroblastosis virus (AEV) defective in both erbA and erbB oncogenes EMBO J. 6 1987 375 382
45. B.D. Darimont R.L. Wagner J.W. Apriletti M.R. Stallcup P.J. Kushner J.D. Baxter R.J. Fletterick K.R. Yamamoto Structure and specificity of nuclear receptor-coactivator interactions Genes Dev. 12 1998 3343 3356
46. S. Dimitrov M.C. Dasso A.P. Wolffe Remodeling sperm chromatin in Xenopus laevis egg extracts: The role of core histone phosphorylation and linker histone B4 in chromatin assembly J. Cell Biol. 126 1994 591 601
47. C. Disela C. Glineur T. Bugge J. Sap G. Stengl J. Dogson H. Stunnenberg H. Beug M. Zenke v-erbA overexpression is required to extinguish c-erebA function in erythroid cell differentiation and regulation of the erbA target gene CAII Genes Dev. 5 1991 2033 2047
48. F. Dong J.C. Hansen K.E. van Holde DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro Proc. Natl. Acad. Sci. U.S.A. 87 1989 5724 5728
49. C.E. Drabik C.A. Nicita L.C. Lutter Measurement of linker number change in transcribing chromatin J. Mol. Biol. 267 1997 794 806
50. D.G. Edmondson M.M. Smith S.Y. Roth Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4 Genes Dev. 10 1996 1247 1259
51. B.P. Eliceiri D.D. Brown Quantitation of endogenous thyroid hormone receptors alpha and beta during embryogenesis and metamorphosis in Xenopus laevis J. Biol. Chem. 269 1994 24459 24465
52. R.M. Evans The steroid and thyroid hormone receptor superfamily Science 240 1988 889 895
53. W. Feng R.C.J. Ribeiro R.L. Wagner H. Nguyen J.W. Apriletti R.J. Fletterick J.D. Baxter P.J. Kushner B.L. West Hormone-dependent coactivator binding to a hydrophobic cleft on nuclear receptors Science 280 1998 1747 1749
54. T.M. Fletcher J.C. Hansen The nucleosomal array: Structure/function relationships Crit. Rev. Eukaryotic Gene Expression 6 1996 149 188
55. J.D. Fondell A.L. Roy R.G. Roeder Unliganded thyroid hormone receptor inhibits formation of a functional preinitiation complex: Implications for active repression Genes Dev. 7 1993 1400 1410
56. D. Forrest M. Sjöberg B. Vennstrom Contrasting developmental and tissue-specific expression of α and β thyroid hormone receptor genes EMBO J. 9 1990 1519 1528
57. D. Forrest E. Hanebuth R.J. Smeyne N. Everds C.L. Stewart J.M. Wehner T. Curran Recessive resistance to thyroid hormone in mice lacking thyroid hormone receptor β: Evidence for tissue-specific modulation of receptor function EMBO J. 15 1996 3006 3015
58. D. Forrest L.C. Erway L. Ng R. Altschuler T. Curran Thyroid hormone receptor β is essential for development of auditory function Nat. Gen. 13 1996 354 357
59. A. Fraichard O. Chassande M. Plateroti J.P. Roux J. Trouillas C. Dehay C. Legrand K. Gauthier M. Kedinger L. Malaval B. Rousset J. Samarut The T3Rα gene encoding a thyroid hormone receptor is essential for post-natal development and thyroid hormone production EMBO J. 16 1997 4412 4420
60. C.J. Fryer T.K. Archer Chromatin remodeling by the glucocorticoid receptor requires the BRG1 complex Nature (London) 393 1998 88 91
61. O. Gandrillon A. Rascle J. Samarut The v-erbA oncogene: A superb tool for dissecting the involvement of nuclear hormone receptors in differentiation and neoplasia Int. J. Oncol. 6 1995 215 234
62. M. Garcia-Ramirez F. Dong J. Ausio Role of the histone ‘tails’ in the folding of oligonucleosomes depleted of histone H1 J. Biol. Chem. 267 1992 19587 19595
63. M. Garcia-Ramirez C. Rocchini J. Ausio Modulation of chromatin folding by histone acetylation J. Biol. Chem. 270 1995 17923 17928
64. L. Gaudreau A. Schmid D. Blaschke M. Ptashne W. Horz RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter Cell (Cambridge, Mass.) 89 1997 55 62
65. J.E. Germond B. Hirt P. Oudet M. Gross-Bellard P. Chamvon Folding of the double helix in chromatin like structures from simian virus 40 Proc. Natl. Acad. Sci. U.S.A. 72 1975 1843 1847
66. C.K. Glass Differential recognition of target genes by nuclear receptor monomers, dimers, and heterodimers Endocr. Rev. 15 1994 391 407
67. C.K. Glass S.M. Lipkin O.V. Devary M.G. Rosenfeld Positive and negative regulation of gene transcription by a retinoic acid-thyroid hormone receptor heterodimer Cell (Cambridge, Mass.) 59 1989 697 708
68. J.S. Godde A.P. Wolffe Nucleosome assembly of CTG triplet repeats J. Biol. Chem. 271 1996 15222 15229
69. J.S. Godde Y. Nakatani A.P. Wolffe The aminio-terminal tails of the core histones and the translational position of the TATA box determine TBP/TFIIA association with nucleosomal DNA Nucleic Acids Res. 23 1995 4557 4564
70. G. Graupner K.N. Wills M. Tzukerman X.K. Zhang M. Pfahl Dual regulatory role for thyroid-hormone receptors allows control of retinoic-acid receptor activity Nature (London) 340 1989 653 656
71. F. Grignani S. De Matteis C. Nervi L. Tomassoni V. Gelmetti M. Cioce M. Fanelli M. Ruthardt F.F. Ferrara I. Zamir C. Seiser F. Grignani M.A. Lazar S. Minucci P.G. Pelicci Fusion proteins of the retinoic acid receptor-alpha recruit histone deacetylase in promyelocytic leukaemia Nature (London) 391 1998 815 818
72. D. Guschin S. Chandler A.P. Wolffe Asymmetric linker histone association directs the asymmetric rearrangement of core histone interactions in a positioned nucleosome containing a thyroid hormone response element Biochemistry 37 1998 8629 8636
73. E. Hadzic V. Desai-Yajnik E. Helmer S. Guo S. Wu N. Koudinova J. Casanova B.M. Raaka H.H. Samuels A 10-amino-acid sequence in the N-terminal A/B domain of thyroid hormone receptor α is essential for transcriptional activation and interaction with the general transcription factor TFIIB Mol. Cell. Biol. 15 1995 4507 4517
74. S. Halachmi E. Marden G. Martin H. MacKay C. Abvondanza M. Brown Estrogen receptor-associated proteins: Possible mediators of hormone-induced transcription Science 264 1994 1455 1458
75. J.C. Hansen K.E. van Holde D. Lohr The mechanism of nucleosome assembly onto oligomers of the sea urchin 5S DNA positioning sequence J. Biol. Chem. 266 1991 4276 4282
76. J.C. Hansen C. Tse A.P. Wolffe Structure and function of the core histone N-termini: More than meets the eye Biochemistry 37 1999 17637 17641
77. J.J. Hayes Site-directed cleavage of DNA by a linker histone-Fe(II) EDTA coinugate: Localization of a globular domain binding site within a nucleosome Biochemistry 35 1996 11931 11937
78. J.J. Hayes A.P. Wolffe Histones H2A/H2B inhibit the interactions of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome Proc. Natl. Acad. Sci. U.S.A. 89 1992 1229 1233
79. J.J. Hayes A.P. Wolffe Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome Proc. Natl. Acad. Sci. U.S.A. 90 1993 6415 6419
80. J.J. Hayes T.D. Tullius A.P. Wolffe The structure of DNA in a nucleosome Proc. Natl. Acad. Sci. U.S.A. 87 1990 7405 7409
81. J.J. Hayes D.J. Clark A.P. Wolffe Histone contributions to the structure of DNA in the nucleosome Proc. Natl. Acad. Sci. U.S.A. 88 1991 6829 6833
82. D.M. Heery E. Kalkhoven S. Hoare M.G. Parker A signature motif in transcriptional co-activators mediates binding to nuclear receptors Nature (London) 387 1997 733 736
83. T. Heinzel R.M. Laviusky T.M. Mullen M. Soderstrom C.D. Laherty J.T. Torchia W.-M. Yang C. Brard S.G. Ngo J.R. Davie E. Seto R.M. Eisenman D.W. Rose C.K. Glass M.G. Rosenfeld N-CoR, mSIN3, and histone deacetylase in a complex required for repression by nuclear receptors and Mad Nature (London) 387 1997 43 48
84. J.N. Hirschhorn S.A. Brown C.D. Clark F. Winston Evidence that SNF2/SWI2 and SNF activate transcription in yeast by altering chromatin structure Genes Dev. 6 1992 2288 2298
85. A.N. Hollenberg T. Monden F.E. Wondisford Ligand-independent and -dependent functions of thyroid hormone receptor isoforms depend upon their distinct amino termini J. Biol. Chem. 270 1995 14274 14280
86. L. Hong G.P. Schroth H.R. Matthews P. Yau E.M. Bradbury Studies of the DNA binding properties of the histone H4 amino terminus J. Biol. Chem. 268 1993 305 314
87. A.J. Horlein A.M. Naar T. Heinzel J. Torchia B. Gloss R. Kurokawa A. Ryan Y. Kamei M. Soderstrom C.K. Glass M.G. Rosenfeld Ligand-independent repression by the thyroid hormone receptor mediated by a nuclear receptor co-repressor Nature (London) 377 1995 397 404
88. A.M. Imbalzano H. Kwon M.R. Green R.E. Kingston Facilitated binding of TATA-binding protein to nucleosomal DNA Nature (London) 370 1994 481 485
89. A. Imhof X.J. Yang V.V. Ogryzko Y. Nakatani A.P. Wolffe H. Ge Acetylation of general transcription factors by histone acetyltransferases: Identification of a major site of acetylation in TFIIEβ Curr. Biol. 7 1997 689 692
90. C. Judelson M.L. Privalsky DNA recognition by normal and oncogenic thyroid hormone receptors J. Biol. Chem. 18 1996 10800 10805
91. D. Kadosh K. Struhl Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters Cell (Cambridge, Mass.) 89 1997 365 571
92. Y. Kamei L. Xu T. Heinzel J. Torchia R. Kurokama B. Gloss S.-C. Lin R.A. Heyman D.W. Rose C.K. Glass M.G. Rosenfeld A CBP integrator complex mediates transcriptional activation and AP-1 inhibition by nuclear receptors Cell (Cambridge, Mass.) 85 1996 403 414
93. A. Kanamori D.D. Brown The regulation of thyroid hormone receptor β genes by thyroid hormone in Xenopus laevis J. Biol. Chem. 267 1992 739 745
94. S.U. Kass N. Landsberger A.P. Wolffe DNA methylation directs a time-dependent repression of transcription initiation Curr. Biol. 7 1997 157 165
95. P.D. Kaufmann M.R. Botchan Assembly of nucleosomes: Do multiple assembly factors mean multiple mechanisms? Curr. Opin. Genet. Dev. 4 1994 229 235
96. A. Kawahara B.S. Baker J.R. Tata Developmental and regional expression of thyroid hormone receptor genes during Xenopus metamorphosis Development (Cambridge, UK) 112 1991 933 943
97. W.A. Krajewski P.B. Becker Reconstitution of hyperacetylated, DNase I-sensitive chromatin characterized by high conformational flexibility of nucleosomal DNA Proc. Natl. Acad. Sci. U.S.A. 95 1998 1540 1545
98. C.D. Laherty W.M. Yang J.M. Sun J.R. Davie E. Seto R.M. Eisenman Histone deacetylase associated with the mSin3 corepressor mediate Mad transcriptional repression Cell (Cambridge, Mass.) 89 1997 349 356
99. N. Landsberger A.P. Wolffe The role of chromatin and Xenopus heat shock transcription factor (XHSF1) in the regulation of the Xenopus hsp70 promoter in vivo Mol. Cell. Biol. 15 1995 6013 6024
100. N. Landsberger M. Ranjan G. Almouzni D. Stump A.P. Wolffe The heat shock response in Xenopus oocytes, embryos and somatic cells: A regulatory role for chromatin Dev. Biol. 170 1995 62 74
101. B. Le Douarin C. Zechel J.-M. Garnier Y. Lutz L. Tora B. Pierrat D. Heery The N-terminal part of TIF1, a putative mediator of the ligand-dependent activation function (AF-2) of nuclear receptors, is fused to B-raf in the oncogenic protein T18 EMBO J. 14 1995 2020 2033
102. D.Y. Lee J.J. Hayes D. Pruss A.P. Wolffe A positive role for histone acetylation in transcription factor binding to nucleosomal DNA Cell (Cambridge, Mass.) 72 1993 73 84
103. 2 termini J. Biol. Chem. 273 1998 12288 12295
104. J. Leloup M. Buscaglia La thiiodothyranine, hormone de la métamorphose des Amphibiens C. R. Hebd. Seances Acad. Sci. Ser. D 284 1977 2261 2263
105. Q. Li A. Imhof T.N. Collingwood F.D. Urnov A.P. Wolffe p300 Stimulates transcription instigated by ligand-bound thyroid hormone receptor at a step subsequent Fc chromatin disruption EMBO J. 1999 (in press)
106. Q. Li O. Wrange Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity Genes Dev. 7 1993 2471 2482
107. Q. Li O. Wrange The accessibility of a glucocorticoid response element dependent on its rotational positioning Mol. Cell. Biol. 15 1995 4375 4384
108. Q. Li M. Herrler N. Landsberger N. Kaludov V.V. Ogrzyko Y. Nakatani A.P. Wolffe Xenopus NF-Y pre-sets chromatin and potentiates acetylation responsive transcription from the Xenopus hsp70 promoter in vivo EMBO J. 1998 (in press)
109. B.C. Lin S.-H. Hong S. Krig S.M. Yoh M.L. Privalsky A conformational switch in nuclear hormone receptors is involved in coupling hormone binding to corepressor release Mol. Cell. Biol. 17 1997 6131 6138
110. R.J. Lin K. Nagy S. Inoue W. Shao W.H. Miller Jr. R.M. Evans Role of the histone deacetylase complex in acute promyelocytic leukaemia Nature (London) 391 1998 811 814
111. I. Machuca G. Esslemont L. Fairclough J.R. Tata Analysis of structure and expression of the Xenopus thyroid hormone receptor β gene to explain its autoregulation Mol. Endocrinol. 9 1995 96 107
112. A. Munoz M. Zenke U. Gehring J. Sap H. Beug B. Vennstrom Characterization of the hormone-binding domain of the chicken c-erbA/thyroid hormone receptor protein EMBO J. 7 1988 155 159
113. V. Mutskov D. Gerber D. Angelov J. Ausio J. Workman S. Dimitrov Persistant interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding Mol. Cell. Biol. 18 1998 6293 6304
114. L. Nagy H.Y. Kao D. Chakravarti R.J. Lin C.A. Hassig D.E. Ayer S.L. Schreiber R.M. Evans Nuclear receptor repression mediated by a complex containing SMRT, mSin3A, and histone deacetylase Cell (Cambridge, Mass.) 89 1997 373 380
115. K.P. Nightingale S. Dimitrov R. Reeves A.P. Wolffe Evidence for a shared structural role for HMG1 and linker histones B4 and H1 in organizing chromatin EMBO J. 15 1996 548 561
116. K.P. Nightingale R.E. Wellinger J.M. Sogo P.B. Becker Histone acetylation facilitates RNA polymerase II transcription of the Drosophila hsp26 gene in chromatin EMBO J. 17 1998 2865 2876
117. V.G. Norton B.S. Imai P. Yau E.M. Bradbury Histone acetylation reduces nucleosome core particle linking number change Cell (Cambridge, Mass.) 57 1989 449 457
118. V.V. Ogryzko R.L. Schiltz V. Russanova B.H. Howard Y. Nakatani The transcriptional coactivators p300 and CBP are histone acetyltransferases Cell (Cambridge, Mass.) 87 1996 953 959
119. S.A. Oñate S.Y. Tsai M.-J. Tsai B.W. O'Malley Sequence and characterization of a coactivator for the steroid hormone receptor superfamily Science 270 1995 1354 1357
120. D. Patterton W.P. Hayes Y.-B. Shi Transcriptional activation of the matrix metalloproteinase gene stromelysin-3 coincides with thyroid hormone induced cell death during frog metamorphosis Dev. Biol. 167 1995 252 262
121. D.S. Pederson R.H. Morse Effect of transcription of yeast chromatin on DNA topology in vivo EMBO J. 9 1990 1873 1881
122. A.J. Perlman F. Stanley H.H. Samuels Thyroid hormone nuclear receptor: Evidence for multimeric organization in chromatin J. Biol. Chem. 257 1982 930 938
123. T. Perlmann O. Wrange Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome EMBO J. 7 1988 3073 3083
124. M. Perry R. Chalkley Histone acetylation increases the solubility of chromatin and occurs sequentially over most of the chromatin J. Biol. Chem. 257 1982 7336 7347
125. B. Pina U. Bruggemeier M. Beato Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter Cell (Cambridge, Mass.) 60 1990 719 731
126. B. Pina D. Barettino M. Truss M. Beato Structural features of a regulatory nucleosome J. Mol. Biol. 216 1990 975 990
127. D. Pruss J.J. Hayes A.P. Wolffe Nucleosomal anatomy—where are the histones? BioEssays 17 1995 161 170
128. D. Pruss B. Bartholomew J. Persinger J. Hayes G. Arents E.N. Moudrianakis A.P. Wolffe An asymmetric model for the nucleosome: A binding site for linker histones inside the DNA gyres Science 274 1996 614 617
129. O.M. Puig E. Belles G. Lopez-Rodas R. Sendra V. Tordera Interaction between N-terminal domain of H4 and DNA is regulated by the acetylation degree Biochim. Biophys. Acta 1397 1998 79 80
130. B.M. Raaka H.H. Samuels Regulation of thyroid hormone nuclear receptor levels in GH1 cells by 3,5,3′-triiodo-L-thyronine. Use of dense amino acid labeling to determine the influence of hormone on the receptor half-life and the rate of appearance of newly synthesized receptor J. Biol. Chem. 256 1981 6883 6889
131. M. Ranjan J. Wong Y.-B. Shi Transcriptional repression of Xenopus TRβ gene is mediated by a thyroid hormone response element located near the start site J. Biol. Chem. 269 1994 24699 24705
132. R. Reeves C.M. Gorman B. Howard Minichromosome assembly of non-integrated plasmid DNA transfected into mammalian cells Nucleic Acids Res. 13 1985 3599 3615
133. S. Refetoff L.T. DeWind L.J. de Groot Familial syndrome combining deafmutism, stippled epiphyses, goiter and abnormally high PBI: Possible target organ refractoriness to thyroid hormone J. Clin. Endocrinol. Metab. 27 1967 279 294
134. J.-P. Renaud N. Rochel M. Ruff V. Vivat P. Chamvon H. Gronemeyer D. Moras Crystal structure of the RAR-γ ligand-binding domain bound to all-trans retinoic acid Nature (London) 378 1995 681 689
135. H. Richard-Foy G.L. Hager Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter EMBO J. 6 1987 2321 2328
136. S.Y. Roth A. Dean R.T. Simpson Yeast α2 repressor positions nucleosomes in TRP1/ARS1 chromatin Mol. Cell. Biol. 10 1990 2247 2260
137. F. Saatcioglu P. Bartunek T. Deng M. Zenke M. Karin A conserved C-terminal sequence that is deleted in v-ErbA is essential for the biological activities of c-ErbA Mol. Cell. Biol. 13 1993 3675 3685
138. H.H. Samuels F. Stanley J. Casanova T.C. Shao Thyroid hormone nuclear receptor levels are influenced by the acetylation of chromatin-associated proteins J. Biol. Chem. 255 1980 2499 2508
139. H.H. Samuels A.J. Perlman B.M. Raaka F. Stanley Organization of the thyroid hormone receptor in chromatin Recent Prog. Horm. Res. 38 1982 557 599
140. J. Sap A. Munoz K. Damm Y. Goldberg J. Ghysdael A. Leutz H. Beug B. Vennstrom The c-erb-A protein is a high-affinity receptor for thyroid hormone Nature (London) 324 1986 635 640
141. M. Scharif M.L. Privalsky V-erbA oncogene function in neoplasia correlates with its ability to repress retinoic acid receptor action Cell (Cambridge, Mass.) 66 1991 885 893
142. C. Schild F.X. Claret W. Wahli A.P. Wolffe A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro EMBO J. 12 1993 423 433
143. P.M. Schwarz J.C. Hansen Formation and stability of higher order chromatin structures. Contributions of the histone octamer J. Biol. Chem. 269 1994 16284 16298
144. R.L. Seale Assembly of DNA and protein during replication in HeLa cells Nature (London) 255 1975 247 249
145. R.L. Seale Nucleosomes associated with newly replicated DNA have an altered conformation Proc. Natl. Acad. Sci. U.S.A. 75 1978 2717 2721
146. X. Shen M.A. Gorovsky Linker histone H1 regulates specific gene expression but not global transcription in vivo Cell (Cambridge, Mass.) 86 1996 475 483
147. Y.-B. Shi Thyroid hormone-regulated early and late genes during amphibian metamorphosis L.I. Gilbert B.G. Atkinson J.R. Tata metamorphosis: Post Embryonic Reprogramming of Gene Expression in Amphibian and Insect Cells 1994 Academic Press San Diego, CA
148. Y.-B. Shi D.D. Brown Genomic organization and alternative promoter usage of the thyroid hormone receptor βgenes in Xenopus laevis J. Biol. Chem. 267 1992 733 738
149. Y.-B. Shi J. Wong M. Puzianowska-Kuznicka M.A. Stolow Tadpole competence and tissue-specific temporal regulation of amphibian metamorphosis: Roles of thyroid hormone and its receptors BioEssays 18 1996 391 399
150. O.C. Steinbach A.P. Wolffe R. Rupp Somatic linker histones causes loss of mesodermal competence in Xenopus Nature (London) 389 1997 395 399
151. K.A. Strait H.L. Schwartz A. Perez-Castillo J.H. Oppenheimer Relationship of c-erbA mRNA content to tissue triiodothyronine nuclear binding capacity and function in developing and adult rats J. Biol. Chem. 265 1990 10514 10521
152. W. Stunkel I. Kober K.H. Seifart A nucleosome positioned in the distal promoter region activates transcription of the human U6 gene Mol. Cell. Biol. 17 1997 4397 4405
153. T. Tagami L.D. Madison T. Nagaya J.L. Jameson Nuclear receptor corepressors activate rather than suppress basal transcription of genes that are negatively regulated by thyroid hormone Mol. Cell. Biol. 17 1997 2642 2648
154. K. Takeda A. Sakurai L.J. de Groot S. Refetoff Recessive inheritance of thyroid hormone resistance caused by a complete deletion of the protein-coding region of the thyroid hormone receptor-beta gene J. Clin. Endocrinol. Metab. 74 1992 49 55
155. Y. Tang D.B. DeFranco ATP dependent release of glucocorticoid receptors from the nuclear matrix Mol. Cell. Biol. 16 1996 1989 2001
156. J.R. Tata Gene expression during metamorphosis: An ideal model for post embryonic development BioEssays 15 1993 239 248
157. J.R. Tata Metamorphosis: An exquisite model for hormonal regulation of post-embryonic development Biochem. Soc. Symp. 62 1996 123 136
158. S. Tenbaum A. vaniahmad Nuclear receptors: Structure, function and involvement in disease Int. J. Biochem. Cell. Biol. 29 1997 1325 1342
159. H. Tomura J. Lazar M. Phyillaier V.M. Nikodem The N-terminal region (A/B) of rat thyroid hormone receptors α1, β1, but not β2 contains a strong thyroid hormone-dependent transactivation function Proc. Natl. Acad. Sci. U.S.A. 92 1995 5600 5604
160. Y. Tone T.N. Collingwood M. Adams V.K. Chatterjee Functional analysis of a transactivation domain in the thyroid hormone β receptor J. Biol. Chem. 269 1994 31157 31161
161. J. Torchia C. Glass M. Rosenfeld Co-activators and co-repressors in the integration of transcriptional responses Curr. Opin. Cell. Biol. 10 1998 373 383
162. M. Truss J. Bartsch A. Schelbert R.J.G. Haché M. Beato Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo EMBO J. 14 1995 1737 1751
163. C. Tse J.C. Hansen Hybrid trypsinized nucleosomal arrays: Identification of multiple functional roles of the H2A/H2B and H3/H4 N-termini in chromatin fiber compaction Biochemistry 36 1997 11381 11388
164. C. Tse T. Sera A.P. Wolffe J.C. Hansen Disruption of higher order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III Mol. Cell. Biol. 18 1998 4629 4638
165. T. Tsukiyama P.B. Becker C. Wu ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor Nature (London) 367 1994 525 532
166. K. Ura J.J. Hayes A.P. Wolffe A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: Restriction by linker histones EMBO J. 14 1995 3752 3765
167. K. Ura K. Nightingale A.P. Wolffe Differential association of HMG1 and linker histones B4 and H1 with dinucleosomal DNA: Structural transitions and transcriptional repression EMBO J. 15 1996 4959 4969
168. K. Ura H. Kurumizaka S. Dimitrov G. Almouzni A.P. Wolffe Histone acetylation: Influence on transcription by RNA polymerase, nucleosome mobility and positioning, and linker histone dependent transcriptional repression EMBO J. 16 1997 2096 2107
169. B. van Steensel M. Brink K. van der Meulen E.P. van Binnendijl D.G. Wansink L. de Jong E.R. de Kloet R. van Driel Localization of the glucocorticoid receptor in discrete clusters in the cell nucleus J. Cell Sci. 108 1995 3003 3011
170. E. Verdin P. Paras C. van Lint Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation EMBO J. 12 1993 3249 3259
171. M. Vetesse-Dadey P. Walter H. Chen L.-J. Juan J.L. Workman Role of the histone amino termini in facilitated binding of a transcription factor, GAL4-AH to nucleosome cores Mol. Cell. Biol. 14 1994 970 981
172. M. Vetesse-Dadey P.A. Grant T.R. Hebbes C. Crane-Robinson C.D. Allis J.L. Workman Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro EMBO J. 15 1996 2508 2518
173. J.J. Voegel M.J.S. Heine C. Zechel P. Chamvon H. Gronemeyer TIF2, a 160 KDa transcription mediator for the ligand-dependent activation function AF2 of nuclear receptors EMBO J. 15 1996 3667 3675
174. R.L. Wagner J.W. Apriletti M.E. McGrath B.L. West J.D. Baxter R.J. Fletterick A structural role for hormone in the thyroid hormone receptor Nature (London) 378 1995 690 697
175. G.M. Wahlstrom M. Harbers B. Vennstrom The oncoprotein P75gag-v-erbA represses thyroid hormone induced transcriptional only via response elements containing palindromic half-sites Oncogene 13 1996 843 852
176. W. Wang J. Côté Y. Xue S. Zhou P.A. Khavara S.R. Biggar C. Muchardt G.V. Kalpana S.P. Goff M. Yaniv J.L. Workman G.R. Crabtree Purification and biochemical heterogeneity of the mammalian SWI/SNF complex EMBO J. 15 1996 5370 5382
177. W. Wang Y. Xue S. Zhou A. Kuo B.R. Cairns G.R. Crabtree Diversity and specialization of mammalian SWI/SNF complexes Genes Dev. 10 1996 2117 2130
178. C. Weinberger C.C. Thompson E.S. Ong R. Lebo D.J. Gruol R.M. Evans The c-erbA gene encodes a thyroid hormone receptor Nature (London) 324 1986 641 646
179. H. Weintraub Assembly and propagation of repressed and depressed chromosomal states Cell (Cambridge, Mass.) 42 1985 705 711
180. L. Wikstrom Ca. Johansson C. Salto C. Barlow A.C. Barros F. Baas D. Forrest P. Thoren B. Vennstrom Abnormal heart rate and body temperature in mice lacking thyroid hormone receptor α1 EMBO J. 17 1998 455 461
181. C.J. Wilson D.M. Chao A.N. Imbalzano G.R. Schnitzer R. Kingston R.A. Young RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling Cell (Cambridge, Mass.) 84 1996 235 244
182. A.P. Wolffe Sinful repression Nature (London) 387 1997 16 17
183. A.P. Wolffe Chromatin Structure and Function 3rd ed. 1998 Academic Press London
184. A.P. Wolffe H.R. Drew The initiation of transcription on nucleosomal templates Proc. Natl. Acad. Sci. U.S.A. 86 1989 9817 9821
185. A.P. Wolffe J.J. Hayes Chromatin disruption and modification Nucleic Acids Res. 27 1999 711 720
186. A.P. Wolffe D. Pruss Targeting chromatin disruption: Transcription regulators that acetylate histones Cell (Cambridge, Mass.) 84 1996 817 819
187. A.P. Wolffe Y.-B. Shi A hypothesis for the transcriptional control of amphibian metamorphosis by the thyroid hormone receptor Am. Zool. 38 1999 253 264
188. A.P. Wolffe G. Almouzni K. Ura D. Pruss J.J. Hayes Transcription factor access to DNA in the nucleosome Cold Spring Harbor Symp. Quant. Biol. 58 1993 225 236
189. J. Wong Y.-B. Shi Coordinated regulation of and transcriptional activation by Xenopus thyroid hormone and retinoid X receptors J. Biol. Chem. 270 1995 18479 18483
190. J. Wong Y.-B. Shi A.P. Wolffe A role for nucleosome assembly in both silencing and activation of the Xenopus TRβA gene by the thyroid hormone receptor Genes Dev. 9 1995 2696 2711
191. J. Wong Y.-B. Shi A.P. Wolffe Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: Hormone regulated chromatin disruption is not sufficient for transcriptional activation EMBO J. 16 1997 3158 3171
192. J. Wong Q. Li B.-Z. Levi Y.-B. Shi A.P. Wolffe Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor EMBO J. 16 1997 7130 7145
193. J. Wong D. Patterton A. Imhof Y.-B. Shi A.P. Wolffe Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase EMBO J. 17 1998 520 534
194. X.-J. Yang V.V. Ogryzko J.-I. Nishikawa B. Howard Y. Nakatani A p300/CBP-associated factor that competes with the adenoviral E1A oncoprotein Nature (London) 382 1996 319 324
195. Y. Yaoita Y.-B. Shi D.D. Brown Xenopus laevis α and β thyroid hormone receptors Proc. Natl. Acad. Sci. U.S.A. 87 1990 7090 7094
196. 3 receptors and transcriptional corepressors Mol. Endocrinol. 11 1997 470 480
197. M. Zenke A. Munoz J. Sap B. Vennstrom H. Beug v-erbA oncogene activation entails the loss of hormone-dependent regulator activity of c-erbA Cell (Cambridge, Mass.) 61 1990 1035 1049
198. D.-E. Zhang D.A. Nelson Histone acetylation in chicken erythrocytes. Rates of acetylation and evidence that histones in both active and potentially active chromatin are rapidly modified Biochem. J. 250 1988 233 240