Cell biology, chemogenomics and chemoproteomics

Cell Biology International

Volumn 28, Issue 11, 2004, Pages 755-764

  Gagna, Claude E ^a,b   Winokur, Dena ^b   Clark Lambert, W ^a  

^a UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

^b NEW YORK INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Cell biology; Chemogenomics; Chemoproteomics; Genomics; Histochemistry; Histotechnology; Immunohistochemistry; Proteomics; Tissue microarrays

Indexed keywords

ANALYTIC METHOD; BIOINFORMATICS; COMPUTER ANALYSIS; CYTOLOGY; DNA MICROARRAY; DNA STRUCTURE; GENOMICS; HUMAN; MICROSCOPY; MOLECULAR BIOLOGY; NOMENCLATURE; PROTEOMICS; REVIEW; TECHNOLOGY;

EID: 9244244244     PISSN: 10656995     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cellbi.2004.07.006     Document Type: Article

References (65)

1. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter Molecular biology of the cell 2002 Garland Science New York, NY
2. K. Bahlmann, S. Jakobs, and S.W. Hell 4Pi-confocal microscopy of live cells Ultramicroscopy 87 2001 155 164
3. J.K. Barton Metals and DNA: molecular left-handed complements Science 233 1986 727 734
4. P. Beroza, H.O. Villar, M.M. Wick, and G.R. Martin Chemoproteomics as a basis for post-genomic drug discovery Drug Discov Today 7 2002 807 814
5. J.C. Betts Transcriptomics and proteomics: tools for the identification of novel drug targets and vaccine candidates for tuberculosis IUBMB Life 53 2002 239 242
6. J.F. Blake Chemoinformatics-predicting the physicochemical properties of 'drug-like' molecules Curr Opin Biotechnol 11 2000 104 107
7. D. Bowtell, and J. Sambrook DNA microarrays: a molecular cloning manual 2003 Cold Spring Harbor Laboratory Press Cold Spring, NY
8. G. Burger, J.S. Ploem, and K. Goerttler Clinical cytometry and histometry 1987 Academic Press New York, NY
9. P.R. Caron, M.D. Mullican, R.D. Mashal, K.P. Wilson, M.S. Su, and M.A. Murcko Chemogenomic approaches to drug discovery Curr Opin Chem Biol 5 2001 464 470
10. T.F. Chan, J. Carvalho, L. Riles, and X.F. Zheng A chemical genomics approach toward understanding the global functions of the target of rapamycin protein (TOR) Proc Natl Acad Sci U S A 97 2000 13227 13232
11. C.R. Cogle, S.M. Guthrie, R.C. Sanders, W.L. Allen, E.W. Scott, and B.E. Petersen An overview of stem cell research and regulatory issues Mayo Clin Proc 78 2003 993 1003
12. D.A. Dombeck, M. Blanchard-Desce, and W.W. Webb Optical recording of action potentials with second-harmonic generation microscopy J Neurosci 24 2004 999 1003
13. M. Dreger Proteome analysis at the level of subcellular structures Eur J Biochem 270 2003 589 599
14. I.A. Eltoum, G.P. Siegal, and A.R Frost Microdissection of histologic sections: past, present, and future Adv Anat Pathol 9 2002 316 322
15. C.E. Gagna, W.C. Lambert, H.-R. Kuo, and P.N. Farnsworth Localization of B-DNA and Z-DNA in terminally differentiating fiber cells in the adult lens J Histochem Cytochem 45 1997 1511 1521
16. C.E. Gagna, H.-R. Kuo, and W.C. Lambert Terminal differentiation and left-handed Z-DNA: a review Cell Biol Int 23 1999 1 5
17. C.E. Gagna, H.-R. Kuo, C. Hornan, I. Hammond, and W.C. Lambert Use of anti-single-stranded DNA antibodies to localize and quantify denatured DNA during cell death Cell Biol Int 24 2000 657 659
18. C.E. Gagna, H.-R. Kuo, E. Florea, W. Shami, R. Taormina, and N. Vaswani Comparison of apoptosis and terminal differentiation: the mammalian aging process J Histochem Crytochem 49 2001 929 930
19. C.E. Gagna, and W.C. Lambert The halting arrival of left-handed Z-DNA Med Hypotheses 60 2003 418 423
20. C.E. Gagna, N. Chan, and W.C. Lambert The effects of DNA and protein structure on cancer gene expression Protein Sci 13 2004 152
21. N. George TIRF microscopy: the evanescent wave of the future Am Lab 36 2004 26 28
22. M.D. Haimowitz Practical issues in tissue banking Am J Clin Pathol 107 1997 S75 S81
23. R.P. Haugland Nucleic acid detection and genomics technology Handbook of fluorescent probes and research products 2002 Molecular Probes Press Eugene, OR p. 265-352
24. S.W. Hell Toward fluorescent nanoscopy Nat Biotechnol 21 2003 1347 1355
25. Y. Hiraoka, J.S. Minden, J.R. Swedlow, J.W. Sedat, and D.A. Agard Focal points for chromosome condensation and decondensation revealed by three-dimensional in vivo time-lapse microscopy Nature 342 1989 293 296
26. A. Hoos, and C. Cordon-Cardo Tissue microarray profiling of cancer specimens and cell lines: opportunities and limitations Lab Invest 81 2001 1331 1338
27. F.D. Hsu, T.O. Nielsen, A. Alkushi, B. Dupuis, D. Huntsman, and C.L. Liu Tissue microarrays are an effective quality assurance tool for diagnostic immunohistochemistry Mod Pathol 15 2002 1374 1380
28. L.A. Huber, K. Pfaller, and I. Victor Organelle proteomics: implications for subcellular fractionation in proteomics Circ Res 92 2003 962 968
29. J.H. Kim Bioinformatics and genomic medicine Genet Med 4 2002 625 655
30. A. Levchenko Computational cell biology in the post-genomic era Mol Biol Rep 28 2001 83 89
31. K.C. Lo, W.W. Chuang, and D.J. Lamb Stem cell research: the facts, the myths and the promises J Urol 170 2003 2453 2458
32. D.J. Lockhart, and E.A. Winzeler Genomics, gene expression and DNA arrays Nature 405 2000 827 836
33. C.E. Lunte, and D.O. Scott Sampling living systems using microdialysis probes Anal Chem 63 1991 773 780
34. S.A. Mann, P. Happel, G. Hoffmann, and I.D. Dietzel Imaging living cells with scanning ion-conductance microscopy GIT Imaging Microsc 6 2004 40 42
35. W.H. McDonald, and J.R. Yates Proteomic tools for cell biology Traffic 1 2000 747 754
36. C.S. McKay, J.A. McLeod, and G.I. Murray Laser capture microscopy Br Med J 53 2000 64 68
37. G.A. Meek, and H.Y. Elder Analytical and quantitative methods in microscopy 1977 Cambridge University Press Cambridge, UK
38. H. Moch, J. Kononen, O.P. Kallioniemi, and G. Sauter Tissue microarrays: what will they bring to molecular and anatomic pathology Anat Pathol 8 2001 14 20
39. D.B. Murphy Fundamentals of light microscopy and electronic imaging 2001 Wiley-Liss New York, NY
40. H. Newman-Gage Fetal tissue banking: standards and regulatory issues J Hematother 5 1996 189 193
41. J.K. Nicholson, J. Connelly, J.C. Lindon, and E. Holmes Metabonomics: a platform for studying toxicity and gene function Nat Rev Drug Discov 1 2002 153 161
42. J.W. Oosterhuis, J.W. Coebergh, and E.B. van Veen Tumor banks: well-guarded treasures in the interest of patients Nature 3 2003 73 77
43. A. Pandey, and M. Mann Proteomics to study genes and genomes Nature 405 2000 837 846
44. L. Porubleva, and P.R. Chitnis Proteomics: a powerful tool in the post-genomic era Indian J Biochem Biophys 37 2000 360 368
45. J.H. Price, A. Goodacre, K. Hahn, L. Hodgson, E.A. Hunter, and S. Krajewski Advances in molecular labeling, high throughput imaging and machine intelligence portend powerful functional cellular biochemistry tools J Cell Biochem 39 2002 194 210
46. X. Qian, L. Jin, and R.V. Lloyd In situ hybridization: basic approaches and recent developments J Histotechnol 27 2004 53 67
47. M.D. Rekhter, and J. Chen Molecular analysis of complex tissues is facilitated by laser capture microdissection: critical role of upstream tissue processing Cell Biochem Biophys 35 2001 103 113
48. T. Reya, S.J. Morrison, M.F. Clarke, and I.L. Weissman Stem cells, cancer, and cancer stem cells Nature 414 2001 105 111
49. A. Rich Speculation on the biological roles of left-handed Z-DNA Ann N Y Acad Sci 726 1994 1 17
50. F. Rudert Genomics and proteomics tools for the clinic Curr Opin Mol Ther 2 2000 633 642
51. D.B. Searls Bioinformatics tools for whole genomes Annu Rev Genomics Hum Genet 1 2000 251 279
52. A. Sehgal Drug discovery and development using chemical genomics Curr Opin Drug Discov Dev 5 2002 526 531
53. D. Shotton Electronic light microscopy: techniques in modern biomedical microscopy 1993 Wiley-Liss New York, NY
54. R.R. Sinden Left-handed Z-DNA. DNA structure and function 1994 Academic Press New York, NY 179 216
55. M. Skacel, B. Skilton, J.D. Pettay, and R.R. Tubbs Tissue microarrays: a powerful tool for high-throughput analysis of clinical specimens: a review of the method with validation data Appl Immunohistochem 10 2002 1 6
56. M. Straub, P. Lodemann, P. Holroyd, R. Jahn, and S.W. Hell Live cell imaging by multifocal multiphoton microscopy Eur J Cell Biol 79 2000 726 734
57. N. Uzunbajakava, A. Lenferink, Y. Karaan, E. Volokhina, G. Vrensen, and J. Greve Nonresonant confocal Raman imaging of DNA and protein distribution in apoptotic cells Biophys J 84 2003 3968 3981
58. J.C. Venter, M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, and G.G. Sutton The sequence of the human genome Science 291 2001 1304 1351
59. J.F. Waring, and D.N. Halbert The promise of toxicogenomics Curr Opin Mol Ther 4 2002 229 235
60. S.M. Watkins, and J.B. German Metabolomics and biochemical profiling in drug discovery and development Curr Opin Mol Ther 4 2002 224 228
61. S.E. Wildsmith, and F.J. Elcock Microarrays under the microscope Mol Pathol 54 2001 8 16
62. K.L. Williams Genomes and proteomes: towards a multi-dimensional view of biology Electrophoresis 20 1999 678 688
63. E.D. Zanders, D.S. Bailey, and P.M. Dean Probes for chemical genomics by design Drug Discov Today 7 2002 711 718
64. X.F. Zheng, and T.F. Chan Chemical genomics: a systematic approach in biological research and drug discovery Curr Issues Mol Biol 4 2002 33 43
65. X.F.S. Zheng, and T.F. Chan Chemical genomics in the global study of protein functions Drug Discov Today 7 2002 197 205