Photobleaching FRET Microscopy

Molecular Imaging: FRET Microscopy and Spectroscopy

Volumn , Issue , 2005, Pages 146-164

  Kenworthy, Anne K ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85108715760     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-019517720-6.50017-1     Document Type: Chapter

References (70)

1. Anderson R.G.W., Jacobson K. A role for lipid shells in targeting proteins to caveolae, rafts and other lipid domains. Science 2002, 296:1821-1825.
2. Bacso Z., Bene L., Bodnar A., Matko J., Damjanovich S. A photobleaching energy transfer analysis of CD8/MHC-I and LFA-1/ICAM-1 interactions in CTL-target cell conjugates. Immunol. Lett. 1996, 54:151-156.
3. Bastiaens P.I., Jovin T.M. Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: fluorescent-labeled protein kinase C beta I. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:8407-8412.
4. Bastiaens P.I.H., Jovin T.M. Fluorescence resonance energy transfer microscopy. Cell Biology: A Laboratory Handbook 1998, 136-146. Academic Press, New York. J.E. Celis (Ed.).
5. Bastiaens P.I., Majoul I.V., Verveer P.J., Soling H.D., Jovin T.M. Imaging the intracellular trafficking and state of the AB5 quaternary structure of cholera toxin. EMBO J. 1996, 15:4246-4253.
6. Bastiaens P.I.H., Wouters F.S., Jovin T.M. Imaging the molecular state of proteins in cells by fluorescence resonance energy transfer (FRET). Sequential photobleaching of Forster donor-acceptor pairs. Presented at the 2nd Hamamatsu International Symposium on Biomolecular Mechanisms and Photonics: Cell-Cell Communications 1995.
7. Benson D.M., Bryan J., Plant A.L., Gotto A.M., Smith L.C. Digital imaging fluorescence microscopy: spatial heterogeneity of photobleaching rate constants in individual cells. J. Cell. Biol. 1985, 100:1309-1323.
8. Berney C., Danuser G. FRET or no FRET: a quantitative comparison. Biophys. J. 2003, 84:3992-4010.
9. Brown D.A., London E. Functions of lipid rafts in biological membranes. Annu. Rev. Cell Dev. Biol. 1998, 14:111-136.
10. Clegg R.M. Fluorescence resonance energy transfer (FRET). Fluorescence Imaging Spectroscopy and Microscopy 1996, 179-252. John Wiley, New York. B. Herman (Ed.).
11. Damjanovich S., Vereb G., Schaper A., Jenei A., Matko J., Starink J.P., Fox G.Q., Arndt-Jovin D.J., Jovin T.M. Structural hierarchy in the clustering of HLA class I molecules in the plasma membrane of human lymphoblastoid cells. Proc. Natl. Acad. Sci. USA 1995, 92:1122-1126.
12. Day R.N., Periasamy A., Schaufele F. Fluorescence resonance energy transfer microscopy of localized protein interactions in the living cell nucleus. Methods 2001, 25:4-18.
13. Edidin M. The state of lipid rafts: from model membranes to cells. Annu. Rev. Biophys. Biomol. Struct. 2003, 32:257-283.
14. Erickson M.G., Alseikhan B.A., Peterson B.Z., Yue D.T. Preassociation of calmodulin with voltage-gated Ca(2+) channels revealed by FRET in single living cells. Neuron 2001, 31:973-985.
15. Erickson M.G., Moon D.L., Yue D.T. DsRed as a potential FRET partner with CFP and GFP. Biophys. J. 2003, 85:599-611.
16. Gadella T.W., Jovin T.M. Oligomerization of epidermal growth factor receptors on A431 cells studied by time-resolved fluorescence imaging microscopy. A stereochemical model for tyrosine kinase receptor activation. J. Cell Biol. 1995, 129:1543-1558.
17. Gadella T.W.J.J., Jovin T.M. Fast algorithms for the analysis of single and double exponetial decay curved with a background term. Application to time-resolved imaging microscopy. Bioimaging 1997, 5:5-39.
18. Glebov O.O., Nichols B.J. Lipid raft proteins have a random distribution during localzied activation of the T-cell receptor. Nat. Cell Biol. 2004, 6:238-243.
19. Ha T., Enderle T., Ogletree D.F., Chemla D.S., Selvin P.R., Weiss S. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:6264-6268.
20. Hannan L.A., Lisanti M.P., Rodriguez-Boulan E., Edidin M. Correctly sorted molecules of a GPI-anchored protein are clustered and immobile when they arrive at the apical surface of MDCK cells. J. Cell Biol. 1993, 120:353-358.
21. Helms J.B., Zurzolo C. Lipids as targeting signals: lipid rafts and intracellular trafficking. Traffic 2004, 5:247-254.
22. Hoppe A., Christensen K., Swanson J.A. Fluorescence resonance energy transfer-based stoichiometry in living cells. Biophys. J. 2002, 83:3652-3664.
23. Jacobson K., Dietrich C. Looking at lipid rafts?. Trends Cell Biol. 1999, 9:87-91.
24. Jares-Erijman E.A., Jovin T.M. FRET imaging. Nat. Biotechnol. 2003, 21:1387-1395.
25. Jovin T.M., Arndt-Jovin D.J. FRET microscopy: digital imaging of fluorescence resonance energy transfer. Application in cell biology. Cell Structure and Function by Microspectrofluorimetry 1989, 99-117. Academic Press, Orlando. E. Kohen, J.S. Ploem, J.G. Hirschberg (Eds.).
26. Jovin T.M., Arndt-Jovin D.J. Luminescence digital imaging microscopy. Annu. Rev. Biophys. Biophys. Chem. 1989, 18:271-308.
27. Jurgens L., Arndt-Jovin D., Pecht I., Jovin T.M. Proximity relationships between the type I receptor for Fcε. (FcεRI) and the mast cell function-associated antigen (MAFA) studied by donor photobleaching fluorescence resonance energy transfer microscopy. Eur. J. Immunol. 1996, 26:84-91.
28. Karpova T.S., Baumann C.T., He L., Wu X., Grammer A., Lipsky P., Hager G.L., McNally J.G. Fluorescence resonance energy transfer from cyan to yellow fluorescent protein detected by acceptor photobleaching using confocal microscopy and a single laser. J. Microsc. 2003, 209:56-70.
29. Kenworthy A.K. Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy. Methods 2001, 24:289-296.
30. Kenworthy A.K. Peering inside lipid rafts and caveolae. Trends Biochem. Sci. 2002, 27:435-438.
31. Kenworthy A.K., Edidin M. Distribution of a glycosylphosphatidylinositol-anchored protein at the apical surface of MDCK cells examined at a resolution of <100using imaging fluorescence resonance energy transfer. J. Cell Biol. 1998, 142:69-84.
32. Kenworthy A.K., Edidin M. Imaging fluorescence resonance energy transfer as a probe of membrane organization and molecular associations of GPI-anchored proteins. Protein Lipidation Protocols 1999, 37-49. Humana Press, Totowa, NJ. M.H. Gelb (Ed.).
33. Kenworthy A.K., Petranova N., Edidin M. High-resolution FRET microscopy of cholera toxin B-subunit and GPI-anchored proteins in cell plasma membranes. Mol. Biol. Cell 2000, 11:1645-1655.
34. Kinoshita A., Whelan C.M., Smith C.J., Mikhailenko I., Rebeck G.W., Strickland D.K., Hyman B.T. Demonstration by fluorescence resonance energy transfer of two sites of interaction between the low-density lipoprotein receptor-related protein and the amyloid precursor protein: role of the intracellular adapter protein Fe65. J. Neurosci. 2001, 21:8354-8361.
35. Kovbasnjuk O., Edidin M., Donowitz M. Role of lipid rafts in Shiga toxin 1 interaction with the apical surface of Caco-2 cells. J. Cell Sci. 2001, 114:4025-4031.
36. Kubitscheck U., Schweitzer-Stenner R., Arndt-Jovin D.J., Jovin T.M., Pecht I. Distribution of type I Fcε-receptors on the surface of mast cells probed by fluorescence resonance energy transfer. Biophys. J. 1993, 64:110-120.
37. Llopis J., Westin S., Ricote M., Wang J., Cho C.Y., Kurokawa R., Mullen T.M., Rose D.W., Rosenfeld M.G., Tsien R.Y., Glass C.K. Ligand-dependent interactions of coactivators steroid receptor coactivator-1 and peroxisome proliferator-activated receptor binding protein with nuclear hormone receptors can be imaged in live cells and are required for transcription. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:4363-4368.
38. Manes S., del Real G., Martinez A.C. Pathogens: raft hijackers. Nat. Rev. Immunol. 2003, 3:557.
39. Maxfield F.R. Plasma membrane microdomains. Curr. Opin. Cell Biol. 2002, 14:483-487.
40. Mayor S., Rao M. Rafts: scale-dependent, active lipid organization at the cell surface. Traffic 2004, 5:231-240.
41. Miyawaki A., Tsien R.Y. Monitoring protein conformations and interactions by fluorescence resonance energy transfer between mutants of green fluorescent protein. Methods Enzymol. 2000, 327:472-500.
42. Munro S. Lipid rafts: elusive or illusive?. Cell 2003, 115:377-388.
43. Nagy P., Vamosi G., Bodnar A., Lockett S.J., Szollosi J. Intensity-based energy transfer measurements in digital imaging microscopy. Eur. Biophys. J. 1998, 27:377-389.
44. Nichols B.J. GM1-containing lipid rafts are depleted within clathrin-coated pits. Curr. Biol. 2003, 13:686-690.
45. Pentcheva T., Edidin M. Clustering of peptide-loaded MHC class I molecules for endoplasmic reticulum export imaged by fluorescence resonance energy transfer. J. Immunol. 2001, 166:6625-6632.
46. Pentcheva T., Spiliotis E.T., Edidin M. Cutting edge: Tapasin is retained in the endoplasmic reticulum by dynamic clustering and exclusion from endoplasmic reticulum exit sites. J. Immunol. 2002, 168:1538-1541.
47. Rizzo M.A., Piston D.W. Regulation of beta cell glucokinase by S-nitrosylation and association with nitric oxide synthase. J. Cell Biol. 2003, 161:243-248.
48. Rizzo M.A., Springer G.H., Granada B., Piston D.W. An improved cyan fluorescent protein variant useful for FRET. Nat. Biotechnol. 2004, 22:445-449.
49. Rocheleau J.V., Edidin M., Piston D.W. Intrasequence GFP in class I MHC molecules, a rigid probe for fluorescence anisotropy measurements of the membrane environment. Biophys. J. 2003, 84:4078-4086.
50. Rocheville M., Lange D.C., Kumar U., Sasi R., Patel R.C., Patel Y.C. Subtypes of the somatostatin receptor assemble as functional homo- and heterodimers. J. Biol. Chem. 2000, 275:7862-7869.
51. Sharma P., Varma R., Sarasij R.C., Ira, Gousset K., Krishnamoorthy G., Rao M., Mayor S. Nanoscale organization of multiple GPI-anchored proteins in living cell membranes. Cell 2004, 116:577-589.
52. Siegel R.M., Frederiksen J.K., Zacharias D.A., Chan F.K., Johnson M., Lynch D., Tsien R.Y., Lenardo M.J. Fas preassociation required for apoptosis signaling and dominant inhibition by pathogenic mutations. Science 2000, 288:2354-2357.
53. Simons K., Ehehalt R. Cholesterol, lipid rafts, and disease. J. Clin. Invest. 2002, 110:597-603.
54. Simons K., Ikonen E. Functional rafts in cell membranes. Nature 1997, 387:569-572.
55. Simons K., Toomre D. Lipid rafts and signal transduction. Nat. Rev. Mol. Cell Biol. 2000, 1:31-41.
56. Snapp E.L., Reinhart G.A., Bogert B.A., Lippincott-Schwartz J., Hegde R.S. The organization of engaged and quiescent translocons in the endoplasmic reticulum of mammalian cells. J. Cell Biol. 2004, 164:997-1007.
57. Song L., Hennink E.J., Young I.T., Tanke H.J. Photobleaching kinetics of fluorescein in quantitative fluorescence microscopy. Biophys. J. 1995, 68:2588-2600.
58. Song L., Varma C.A., Verhoeven J.W., Tanke H.J. Influence of the triplet excited state on the photobleaching kinetics on fluorescein in microscopy. Biophys. J. 1996, 70:2959.
59. Spiliotis E.T., Pentcheva T., Edidin M. Probing for membrane domains in the endoplasmic reticulum: retention and degradation of unassembled MHC class I molecules. Mol. Biol. Cell 2002, 13:1566-1581.
60. Szaba G., Pine P.S., Weaver J.L., Kasari M., Aszalos A. Epitope mapping by photobleaching fluorescence resonance energy transfer measurements using a laser scanning microscope system. Biophys. J. 1992, 61:661-670.
61. Tron L. Experimental methods to measure fluorescence resonance energy transfer processes. Mobility and Proximity in Biological Membranes 1994, 1-47. CRC Press, Boca Raton. L. Tron (Ed.).
62. Varma R., Mayor S. GPI-anchored proteins are organized in submicron domains at the cell surface. Nature 1998, 394:798-801.
63. Vyas K.A., Patel H.V., Vyas A.A., Schnaar R.L. Segregation of gangliosides GM1 and GD3 on cell membranes, isolated membrane rafts, and defined supported lipid monolayers. Biol. Chem. 2001, 382:241-250.
64. Wallrabe H., Elangovan M., Burchard A., Periasamy A., Barroso M. Confocal FRET microscopy to measure clustering of ligand-receptor complexes in endocytic membranes. Biophys. J. 2003, 85:559-571.
65. Wouters F.S., Bastiaens P.I. Fluorescence lifetime imaging of receptor tyrosine kinase activity in cells. Curr. Biol. 1999, 9:1127-1130.
66. Wouters F.S., Bastiaens P.I.H., Wirtz K.W.A., Jovin T.M. FRET microscopy demonstrates molecular association of non-specific lipid transfer protein (nsL-TP) with fatty acid oxidation enzymes in peroxisomes. EMBO J. 1998, 17:7179-7189.
67. Young R.M., Arnette J.K., Roess D.A., Barias B.G. Quantitation of fluorescence energy transfer between cell surface proteins via fluorescence donor photobleaching kinetics. Biophys. J. 1994, 67:881-888.
68. Zacharias D.A., Baird G.S., Tsien R.Y. Recent advances in technology for measuring and manipulating cell signals. Curr. Opin. Neurol. 2000, 10:416-421.
69. Zacharias D.A., Violin J.D., Newton A.C., Tsien R.Y. Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science 2002, 296:913-916.
70. Zal T., Gascoigne N.R. Photobleaching-corrected FRET efficiency imaging of live cells. Biophys. J. 2004, 86:3923-3939.