DeepRibo: A neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

Nucleic Acids Research

Volumn 47, Issue 6, 2019, Pages

  Clauwaert, Jim ^a   Menschaert, Gerben ^a   Waegeman, Willem ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL SEQUENCE; ARTICLE; ARTIFICIAL NEURAL NETWORK; BACILLUS SUBTILIS; BINDING SITE; CAULOBACTER VIBRIOIDES; CONTROLLED STUDY; DEEPRIBO; EDMAN DEGRADATION; ESCHERICHIA COLI; FALSE NEGATIVE RESULT; FALSE POSITIVE RESULT; GENE EXPRESSION; HIGH THROUGHPUT SEQUENCING; MASS SPECTROMETRY; MEMORY CELL; MOLECULAR FINGERPRINTING; MULTIPLE SEQUENCE ALIGNMENT; MYCOBACTERIUM SMEGMATIS; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; RIBOSOME BINDING TRANSLATION INITIATION SEQUENCE; RIBOSOME PROFILING; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STAPHYLOCOCCUS AUREUS; START CODON; STREPTOMYCES COELICOLOR; ALGORITHM; BIOLOGY; CHEMISTRY; HIGH THROUGHPUT SCREENING; INFORMATION PROCESSING; METABOLISM; MOLECULAR GENETICS; OPEN READING FRAME; PHYSIOLOGY; PROCEDURES; PROKARYOTIC CELL; PROTEIN PROCESSING; PROTEIN SYNTHESIS; RIBOSOME; SIGNAL TRANSDUCTION;

ALGORITHMS; BINDING SITES; COMPUTATIONAL BIOLOGY; DATASETS AS TOPIC; HIGH-THROUGHPUT SCREENING ASSAYS; MOLECULAR SEQUENCE ANNOTATION; NEURAL NETWORKS (COMPUTER); OPEN READING FRAMES; PROKARYOTIC CELLS; PROTEIN BIOSYNTHESIS; PROTEIN PROCESSING, POST-TRANSLATIONAL; RIBOSOMES; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION;

EID: 85064489973     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkz061     Document Type: Article

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